RNA–Protein interactions for RNA: ENST00000574501.1

SMG6-215, Transcript of SMG6, nonsense mediated mRNA decay factor, human

Gene SMG6, Length 2,419 nt, Biotype retained intron, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SMG6-215	ENST00000574501	OPRPN	Q99935	248 aa	Predicted RBP	10.86	□□□□□ -0.67
SMG6-215	ENST00000574501	JPT2	Q9H910	190 aa		10.86	□□□□□ -0.67
SMG6-215	ENST00000574501	RNASE4	P34096	147 aa	Known RBP	10.86	□□□□□ -0.67
SMG6-215	ENST00000574501	ATXN8	Q156A1	80 aa		10.86	□□□□□ -0.67
SMG6-215	ENST00000574501	ODF3B	A8MYP8	253 aa		10.85	□□□□□ -0.67
SMG6-215	ENST00000574501		G3V318	75 aa		10.85	□□□□□ -0.67
SMG6-215	ENST00000574501		M0QXV9	152 aa		10.85	□□□□□ -0.67
SMG6-215	ENST00000574501	MRPL53	Q96EL3	112 aa	Known RBP	10.85	□□□□□ -0.67
SMG6-215	ENST00000574501	TRAV21	A0A0B4J279	112 aa		10.85	□□□□□ -0.67
SMG6-215	ENST00000574501		B9A039	149 aa		10.85	□□□□□ -0.67
SMG6-215	ENST00000574501	MEIG1	Q5JSS6	88 aa		10.85	□□□□□ -0.67
SMG6-215	ENST00000574501	MUC4	Q99102	2169 aa		10.84	□□□□□ -0.67
SMG6-215	ENST00000574501	IGHV1-69D	A0A0B4J2H0	117 aa		10.84	□□□□□ -0.67
SMG6-215	ENST00000574501		P0DMU3	169 aa		10.84	□□□□□ -0.67
SMG6-215	ENST00000574501	FAM231A	P0DMU4	169 aa		10.84	□□□□□ -0.67
SMG6-215	ENST00000574501	FAM231C	P0DMU5	169 aa		10.84	□□□□□ -0.67
SMG6-215	ENST00000574501	RNASE3	P12724	160 aa	Known RBP	10.84	□□□□□ -0.67
SMG6-215	ENST00000574501	ZNF876P	Q49A33	203 aa		10.84	□□□□□ -0.67
SMG6-215	ENST00000574501	VMO1	Q7Z5L0	202 aa		10.84	□□□□□ -0.67
SMG6-215	ENST00000574501		Q8N6K4	173 aa		10.84	□□□□□ -0.67
SMG6-215	ENST00000574501	ATP6V0E1	O15342	81 aa		10.84	□□□□□ -0.67
SMG6-215	ENST00000574501		Q6Q795	121 aa		10.84	□□□□□ -0.67
SMG6-215	ENST00000574501		Q8N9W7	124 aa		10.84	□□□□□ -0.67
SMG6-215	ENST00000574501	ANKRD11	Q6UB99	2663 aa	Predicted RBP	10.83	□□□□□ -0.68
SMG6-215	ENST00000574501		A0A087WWL8	130 aa		10.83	□□□□□ -0.68
SMG6-215	ENST00000574501		F6UB75	175 aa		10.83	□□□□□ -0.68
SMG6-215	ENST00000574501		H3BMM0	161 aa		10.83	□□□□□ -0.68
SMG6-215	ENST00000574501	IGFL3	Q6UXB1	125 aa		10.83	□□□□□ -0.68
SMG6-215	ENST00000574501	FAM110D	Q8TAY7	271 aa	Predicted RBP	10.83	□□□□□ -0.68
SMG6-215	ENST00000574501	UBE2W	Q96B02	151 aa		10.83	□□□□□ -0.68
SMG6-215	ENST00000574501	ZNF580	Q9UK33	172 aa		10.83	□□□□□ -0.68
SMG6-215	ENST00000574501	AKAP13	Q12802	2813 aa		10.83	□□□□□ -0.68
SMG6-215	ENST00000574501		A0A0B4J2C4	111 aa		10.83	□□□□□ -0.68
SMG6-215	ENST00000574501		F5H697	171 aa		10.83	□□□□□ -0.68
SMG6-215	ENST00000574501	TRIAP1	O43715	76 aa		10.83	□□□□□ -0.68
SMG6-215	ENST00000574501	PPP1R17	O96001	155 aa		10.83	□□□□□ -0.68
SMG6-215	ENST00000574501	TMEM141	Q96I45	108 aa		10.83	□□□□□ -0.68
SMG6-215	ENST00000574501	TRBV10-2	A0A0K0K1G8	114 aa		10.82	□□□□□ -0.68
SMG6-215	ENST00000574501	MBD3L2B	A0A1B0GVZ6	204 aa	Predicted RBP	10.82	□□□□□ -0.68
SMG6-215	ENST00000574501	POLR2K	P53803	58 aa	Known RBP	10.82	□□□□□ -0.68
SMG6-215	ENST00000574501	CHCHD5	Q9BSY4	110 aa		10.82	□□□□□ -0.68
SMG6-215	ENST00000574501	ADARB2-AS1	A8MUL3	147 aa		10.82	□□□□□ -0.68
SMG6-215	ENST00000574501	RPL13A	P40429	203 aa	Known RBP	10.82	□□□□□ -0.68
SMG6-215	ENST00000574501	LINC00315	P59091	139 aa		10.82	□□□□□ -0.68
SMG6-215	ENST00000574501	SUMO4	Q6EEV6	95 aa		10.82	□□□□□ -0.68
SMG6-215	ENST00000574501	OR10J6P	Q8NGY7	276 aa		10.82	□□□□□ -0.68
SMG6-215	ENST00000574501	CEP295	Q9C0D2	2601 aa		10.82	□□□□□ -0.68
SMG6-215	ENST00000574501	ZNF256	Q9Y2P7	627 aa	Predicted RBP	10.82	□□□□□ -0.68
SMG6-215	ENST00000574501	IGKV3-7	A0A075B6H7	116 aa		10.81	□□□□□ -0.68
SMG6-215	ENST00000574501	LGALS9	O00182	355 aa		10.81	□□□□□ -0.68
SMG6-215	ENST00000574501	C2orf82	Q6UX34	121 aa		10.81	□□□□□ -0.68
SMG6-215	ENST00000574501	ITLN2	Q8WWU7	325 aa	Predicted RBP	10.81	□□□□□ -0.68
SMG6-215	ENST00000574501	LINC00477	Q96M19	166 aa		10.81	□□□□□ -0.68
SMG6-215	ENST00000574501	TIMM17A	Q99595	171 aa		10.81	□□□□□ -0.68
SMG6-215	ENST00000574501	SDHAF1	A6NFY7	115 aa		10.8	□□□□□ -0.68
SMG6-215	ENST00000574501	BRI3	O95415	125 aa		10.8	□□□□□ -0.68
SMG6-215	ENST00000574501	CD3E	P07766	207 aa		10.8	□□□□□ -0.68
SMG6-215	ENST00000574501	FOXC1	Q12948	553 aa		10.8	□□□□□ -0.68
SMG6-215	ENST00000574501	ZNF56	Q15929	161 aa		10.8	□□□□□ -0.68
SMG6-215	ENST00000574501	DUX3	Q96PT4	197 aa		10.8	□□□□□ -0.68
SMG6-215	ENST00000574501	KIF25-AS1	Q9Y6Z4	181 aa		10.8	□□□□□ -0.68
SMG6-215	ENST00000574501	TMEM223	A0PJW6	202 aa		10.8	□□□□□ -0.68
SMG6-215	ENST00000574501	VCY	O14598	125 aa		10.8	□□□□□ -0.68
SMG6-215	ENST00000574501	LEPROT	O15243	131 aa		10.8	□□□□□ -0.68
SMG6-215	ENST00000574501	LENEP	Q9Y5L5	61 aa		10.8	□□□□□ -0.68
SMG6-215	ENST00000574501	EEF1AKMT3	Q96AZ1	226 aa		10.79	□□□□□ -0.68
SMG6-215	ENST00000574501		U3KQE9	123 aa		10.79	□□□□□ -0.68
SMG6-215	ENST00000574501		H7C423	109 aa		10.79	□□□□□ -0.68
SMG6-215	ENST00000574501		Q6ZSV7	163 aa		10.79	□□□□□ -0.68
SMG6-215	ENST00000574501	C9orf139	Q6ZV77	190 aa		10.79	□□□□□ -0.68
SMG6-215	ENST00000574501	LINC01560	Q8TB33	94 aa		10.79	□□□□□ -0.68
SMG6-215	ENST00000574501	CELSR1	Q9NYQ6	3014 aa		10.79	□□□□□ -0.68
SMG6-215	ENST00000574501	IGHV4OR15-8	A0A075B7B6	117 aa		10.78	□□□□□ -0.68
SMG6-215	ENST00000574501		A0A087WW49	117 aa		10.78	□□□□□ -0.68
SMG6-215	ENST00000574501	TRAV16	A0A0A6YYK6	109 aa	Predicted RBP	10.78	□□□□□ -0.68
SMG6-215	ENST00000574501	PRSS2	P07478	247 aa		10.78	□□□□□ -0.68
SMG6-215	ENST00000574501	RPL11	P62913	178 aa	Known RBP	10.78	□□□□□ -0.68
SMG6-215	ENST00000574501	FAM74A4	Q5TZK3	123 aa		10.78	□□□□□ -0.68
SMG6-215	ENST00000574501		M0R1W7	72 aa		10.78	□□□□□ -0.68
SMG6-215	ENST00000574501	EBI3	Q14213	229 aa		10.78	□□□□□ -0.68
SMG6-215	ENST00000574501	ACACA	Q13085	2346 aa		10.77	□□□□□ -0.68
SMG6-215	ENST00000574501	TRBV30	A0A0K0K1B3	111 aa		10.77	□□□□□ -0.68
SMG6-215	ENST00000574501	UBE2E1	P51965	193 aa		10.77	□□□□□ -0.68
SMG6-215	ENST00000574501	NPC2	P61916	151 aa		10.77	□□□□□ -0.68
SMG6-215	ENST00000574501	PRR30	Q53SZ7	412 aa	Predicted RBP	10.77	□□□□□ -0.68
SMG6-215	ENST00000574501	POM121L12	Q8N7R1	296 aa		10.77	□□□□□ -0.68
SMG6-215	ENST00000574501	MDFIC	Q9P1T7	246 aa		10.77	□□□□□ -0.68
SMG6-215	ENST00000574501	LINC00527	Q9UJ94	153 aa		10.77	□□□□□ -0.68
SMG6-215	ENST00000574501		A0A0J9YXV3	536 aa		10.77	□□□□□ -0.69
SMG6-215	ENST00000574501	ZNF22	P17026	224 aa	Predicted RBP	10.77	□□□□□ -0.69
SMG6-215	ENST00000574501	CLEC2B	Q92478	149 aa		10.77	□□□□□ -0.69
SMG6-215	ENST00000574501		A0A0J9YXY3	114 aa		10.76	□□□□□ -0.69
SMG6-215	ENST00000574501		M0R2P5	195 aa		10.76	□□□□□ -0.69
SMG6-215	ENST00000574501	UNQ9165/PRO28630	Q6UXU0	137 aa		10.76	□□□□□ -0.69
SMG6-215	ENST00000574501	HRNR	Q86YZ3	2850 aa	Predicted RBP	10.76	□□□□□ -0.69
SMG6-215	ENST00000574501	MED14OS	P0DP75	135 aa		10.76	□□□□□ -0.69
SMG6-215	ENST00000574501	ICOS	Q9Y6W8	199 aa		10.76	□□□□□ -0.69
SMG6-215	ENST00000574501	TRBV7-1	A0A0A6YYK4	115 aa		10.75	□□□□□ -0.69
SMG6-215	ENST00000574501	OVOL1	O14753	267 aa		10.75	□□□□□ -0.69
SMG6-215	ENST00000574501	SPX	Q9BT56	116 aa		10.75	□□□□□ -0.69

Retrieved 100 of 20,778 RNA–protein pairs in 96 ms