RNA–Protein interactions for RNA: ENST00000572334.6

VPS53-213, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 561 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-213ENST00000572334 BPIFA4PQ86YQ2 179 aa4.73□□□□□ -1.65
VPS53-213ENST00000572334 OR8I2Q8N0Y5 310 aa4.73□□□□□ -1.65
VPS53-213ENST00000572334 MRAP2Q96G30 205 aa4.73□□□□□ -1.65
VPS53-213ENST00000572334 IGF2BP2-AS1Q96M15 143 aa4.73□□□□□ -1.65
VPS53-213ENST00000572334 MAP1LC3CQ9BXW4 147 aa4.73□□□□□ -1.65
VPS53-213ENST00000572334 SPANXCQ9NY87 97 aa4.73□□□□□ -1.65
VPS53-213ENST00000572334 RNF24Q9Y225 148 aa4.73□□□□□ -1.65
VPS53-213ENST00000572334 C9orf118A6NHY6 69 aa4.72□□□□□ -1.65
VPS53-213ENST00000572334 K7EP34 96 aa4.72□□□□□ -1.65
VPS53-213ENST00000572334 TAX1BP3O14907 124 aa4.72□□□□□ -1.65
VPS53-213ENST00000572334 PAGE4O60829 102 aa4.72□□□□□ -1.65
VPS53-213ENST00000572334 PRB4P10163 310 aaPredicted RBP4.72□□□□□ -1.65
VPS53-213ENST00000572334 AZU1P20160 251 aa4.72□□□□□ -1.65
VPS53-213ENST00000572334 CKS1BP61024 79 aa4.72□□□□□ -1.65
VPS53-213ENST00000572334 BVES-AS1Q5T3Y7 98 aa4.72□□□□□ -1.65
VPS53-213ENST00000572334 ERASQ7Z444 233 aa4.72□□□□□ -1.65
VPS53-213ENST00000572334 RNF182Q8N6D2 247 aa4.72□□□□□ -1.65
VPS53-213ENST00000572334 SPANXDQ9BXN6 97 aa4.72□□□□□ -1.65
VPS53-213ENST00000572334 TMEM167BQ9NRX6 74 aa4.72□□□□□ -1.65
VPS53-213ENST00000572334 TRAV34A0A0B4J273 112 aa4.71□□□□□ -1.66
VPS53-213ENST00000572334 UBE2L5PA0A1B0GUS4 154 aa4.71□□□□□ -1.66
VPS53-213ENST00000572334 TEX48A0A1B0GUV7 120 aa4.71□□□□□ -1.66
VPS53-213ENST00000572334 SERTM2A0A1B0GWG4 89 aa4.71□□□□□ -1.66
VPS53-213ENST00000572334 C7orf71A4D174 169 aa4.71□□□□□ -1.66
VPS53-213ENST00000572334 GRIFINA4D1Z8 144 aa4.71□□□□□ -1.66
VPS53-213ENST00000572334 F8W1H4 67 aa4.71□□□□□ -1.66
VPS53-213ENST00000572334 H3BP45 60 aa4.71□□□□□ -1.66
VPS53-213ENST00000572334 H3BRN7 92 aa4.71□□□□□ -1.66
VPS53-213ENST00000572334 MRPS12O15235 138 aaKnown RBP4.71□□□□□ -1.66
VPS53-213ENST00000572334 HIST1H1EP10412 219 aaKnown RBP4.71□□□□□ -1.66
VPS53-213ENST00000572334 HTN3P15516 51 aa4.71□□□□□ -1.66
VPS53-213ENST00000572334 TAS2R45P59539 299 aa4.71□□□□□ -1.66
VPS53-213ENST00000572334 HSD52Q0P140 79 aa4.71□□□□□ -1.66
VPS53-213ENST00000572334 SPINK13Q1W4C9 94 aa4.71□□□□□ -1.66
VPS53-213ENST00000572334 RRN3P1Q2M238 152 aa4.71□□□□□ -1.66
VPS53-213ENST00000572334 LINC01559Q495D7 138 aa4.71□□□□□ -1.66
VPS53-213ENST00000572334 EBLN2Q6P2I7 272 aa4.71□□□□□ -1.66
VPS53-213ENST00000572334 NEGR1Q7Z3B1 354 aa4.71□□□□□ -1.66
VPS53-213ENST00000572334 UBE2DNLQ8IWF7 75 aa4.71□□□□□ -1.66
VPS53-213ENST00000572334 C5orf17Q8NAS9 161 aa4.71□□□□□ -1.66
VPS53-213ENST00000572334 ZNRF2Q8NHG8 242 aa4.71□□□□□ -1.66
VPS53-213ENST00000572334 C11orf52Q96A22 123 aa4.71□□□□□ -1.66
VPS53-213ENST00000572334 C16orf92Q96LL3 132 aa4.71□□□□□ -1.66
VPS53-213ENST00000572334 DERL1Q9BUN8 251 aa4.71□□□□□ -1.66
VPS53-213ENST00000572334 SLC25A22Q9H936 323 aa4.71□□□□□ -1.66
VPS53-213ENST00000572334 TRAV12-2A0A075B6T6 113 aa4.7□□□□□ -1.66
VPS53-213ENST00000572334 NDUFB4O95168 129 aa4.7□□□□□ -1.66
VPS53-213ENST00000572334 ORM2P19652 201 aa4.7□□□□□ -1.66
VPS53-213ENST00000572334 DAD1P61803 113 aa4.7□□□□□ -1.66
VPS53-213ENST00000572334 TNP2Q05952 138 aa4.7□□□□□ -1.66
VPS53-213ENST00000572334 ZNF726P1Q15940 193 aa4.7□□□□□ -1.66
VPS53-213ENST00000572334 VWC2Q2TAL6 325 aa4.7□□□□□ -1.66
VPS53-213ENST00000572334 TMEM97Q5BJF2 176 aa4.7□□□□□ -1.66
VPS53-213ENST00000572334 SPANXN5Q5MJ07 72 aa4.7□□□□□ -1.66
VPS53-213ENST00000572334 C1orf134Q5TEV5 83 aa4.7□□□□□ -1.66
VPS53-213ENST00000572334 LYRM7Q5U5X0 104 aa4.7□□□□□ -1.66
VPS53-213ENST00000572334 TMEM14EPQ6UXP3 125 aa4.7□□□□□ -1.66
VPS53-213ENST00000572334 PATE2Q6UY27 113 aa4.7□□□□□ -1.66
VPS53-213ENST00000572334 OR1B1Q8NGR6 318 aa4.7□□□□□ -1.66
VPS53-213ENST00000572334 OR10AG1Q8NH19 301 aa4.7□□□□□ -1.66
VPS53-213ENST00000572334 C18orf32Q8TCD1 76 aa4.7□□□□□ -1.66
VPS53-213ENST00000572334 TSKUQ8WUA8 353 aa4.7□□□□□ -1.66
VPS53-213ENST00000572334 SHANK2-AS3Q9BTD1 123 aa4.7□□□□□ -1.66
VPS53-213ENST00000572334 SLC25A39Q9BZJ4 359 aaPredicted RBP4.7□□□□□ -1.66
VPS53-213ENST00000572334 MRPL16Q9NX20 251 aaKnown RBP4.7□□□□□ -1.66
VPS53-213ENST00000572334 A0A087X0K7 114 aa4.69□□□□□ -1.66
VPS53-213ENST00000572334 LYRM9A8MSI8 78 aa4.69□□□□□ -1.66
VPS53-213ENST00000572334 FNDC10F2Z333 226 aa4.69□□□□□ -1.66
VPS53-213ENST00000572334 K7EQM0 130 aa4.69□□□□□ -1.66
VPS53-213ENST00000572334 LEPROTL1O95214 131 aa4.69□□□□□ -1.66
VPS53-213ENST00000572334 NTF3P20783 257 aa4.69□□□□□ -1.66
VPS53-213ENST00000572334 SRIP30626 198 aa4.69□□□□□ -1.66
VPS53-213ENST00000572334 KIR3DS1Q14943 382 aa4.69□□□□□ -1.66
VPS53-213ENST00000572334 TDRG1Q3Y452 100 aa4.69□□□□□ -1.66
VPS53-213ENST00000572334 MPV17L2Q567V2 206 aa4.69□□□□□ -1.66
VPS53-213ENST00000572334 BOD1L2Q8IYS8 172 aa4.69□□□□□ -1.66
VPS53-213ENST00000572334 Q8N976 141 aa4.69□□□□□ -1.66
VPS53-213ENST00000572334 C15orf53Q8NAA6 179 aa4.69□□□□□ -1.66
VPS53-213ENST00000572334 OR8A1Q8NGG7 326 aa4.69□□□□□ -1.66
VPS53-213ENST00000572334 NPCDR1Q9BY65 106 aa4.69□□□□□ -1.66
VPS53-213ENST00000572334 KRTAP1-5Q9BYS1 174 aa4.69□□□□□ -1.66
VPS53-213ENST00000572334 CYSLTR1Q9Y271 337 aa4.69□□□□□ -1.66
VPS53-213ENST00000572334 NBDYA0A0U1RRE5 68 aa4.68□□□□□ -1.66
VPS53-213ENST00000572334 SMIM27A0A1W2PRY6 76 aa4.68□□□□□ -1.66
VPS53-213ENST00000572334 GAGE12HA6NDE8 117 aa4.68□□□□□ -1.66
VPS53-213ENST00000572334 DUSP14O95147 198 aaKnown RBP4.68□□□□□ -1.66
VPS53-213ENST00000572334 INSP01308 110 aa4.68□□□□□ -1.66
VPS53-213ENST00000572334 SMIM13P0DJ93 91 aa4.68□□□□□ -1.66
VPS53-213ENST00000572334 DEFB130BP0DP73 79 aa4.68□□□□□ -1.66
VPS53-213ENST00000572334 DEFB130AP0DP74 79 aa4.68□□□□□ -1.66
VPS53-213ENST00000572334 COX8AP10176 69 aa4.68□□□□□ -1.66
VPS53-213ENST00000572334 CSN1S1P47710 185 aa4.68□□□□□ -1.66
VPS53-213ENST00000572334 ARL16Q0P5N6 197 aa4.68□□□□□ -1.66
VPS53-213ENST00000572334 MORN5Q5VZ52 161 aa4.68□□□□□ -1.66
VPS53-213ENST00000572334 UFSP1Q6NVU6 142 aa4.68□□□□□ -1.66
VPS53-213ENST00000572334 PQLC2Q6ZP29 291 aa4.68□□□□□ -1.66
VPS53-213ENST00000572334 TMEM136Q6ZRR5 245 aa4.68□□□□□ -1.66
VPS53-213ENST00000572334 FAM231DQ6ZW35 169 aa4.68□□□□□ -1.66
VPS53-213ENST00000572334 LINC00612Q8N6U2 182 aa4.68□□□□□ -1.66
VPS53-213ENST00000572334 BLNKQ8WV28 456 aa4.68□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 72.9 ms