RNA–Protein interactions for RNA: ENST00000572259.1

VPS53-212, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 683 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-212ENST00000572259 MBD3L1Q8WWY6 194 aa4.3□□□□□ -1.72
VPS53-212ENST00000572259 FRZBQ92765 325 aa4.3□□□□□ -1.72
VPS53-212ENST00000572259 C12orf57Q99622 126 aa4.3□□□□□ -1.72
VPS53-212ENST00000572259 TMEM147Q9BVK8 224 aa4.3□□□□□ -1.72
VPS53-212ENST00000572259 IGLV7-46A0A075B6I9 117 aa4.29□□□□□ -1.72
VPS53-212ENST00000572259 SOCS3O14543 225 aa4.29□□□□□ -1.72
VPS53-212ENST00000572259 SERF1AO75920 110 aa4.29□□□□□ -1.72
VPS53-212ENST00000572259 NPPCP23582 126 aa4.29□□□□□ -1.72
VPS53-212ENST00000572259 OR10J1P30954 320 aa4.29□□□□□ -1.72
VPS53-212ENST00000572259 EIF2B2P49770 351 aaKnown RBP4.29□□□□□ -1.72
VPS53-212ENST00000572259 EMP1P54849 157 aa4.29□□□□□ -1.72
VPS53-212ENST00000572259 FABP9Q0Z7S8 132 aa4.29□□□□□ -1.72
VPS53-212ENST00000572259 BTN1A1Q13410 526 aa4.29□□□□□ -1.72
VPS53-212ENST00000572259 C12orf74Q32Q52 190 aa4.29□□□□□ -1.72
VPS53-212ENST00000572259 TMEM75Q8N9X5 138 aa4.29□□□□□ -1.72
VPS53-212ENST00000572259 TIMM17AQ99595 171 aa4.29□□□□□ -1.72
VPS53-212ENST00000572259 A0A087X002 238 aa4.28□□□□□ -1.72
VPS53-212ENST00000572259 IGHV7-4-1A0A0J9YVY3 117 aa4.28□□□□□ -1.72
VPS53-212ENST00000572259 A0A1B0GX51 115 aa4.28□□□□□ -1.72
VPS53-212ENST00000572259 KRBOX1C9JBD0 128 aa4.28□□□□□ -1.72
VPS53-212ENST00000572259 ZNF207O43670 478 aaKnown RBP4.28□□□□□ -1.72
VPS53-212ENST00000572259 SYNGR2O43760 224 aa4.28□□□□□ -1.72
VPS53-212ENST00000572259 PITX3O75364 302 aa4.28□□□□□ -1.72
VPS53-212ENST00000572259 DEFA1P59665 94 aa4.28□□□□□ -1.72
VPS53-212ENST00000572259 DEFA3P59666 94 aa4.28□□□□□ -1.72
VPS53-212ENST00000572259 YPEL3P61236 119 aaPredicted RBP4.28□□□□□ -1.72
VPS53-212ENST00000572259 DHRS2Q13268 280 aa4.28□□□□□ -1.72
VPS53-212ENST00000572259 UNQ9165/PRO28630Q6UXU0 137 aa4.28□□□□□ -1.72
VPS53-212ENST00000572259 OR5A1Q8NGJ0 315 aa4.28□□□□□ -1.72
VPS53-212ENST00000572259 TMEM101Q96IK0 257 aa4.28□□□□□ -1.72
VPS53-212ENST00000572259 GPR82Q96P67 336 aa4.28□□□□□ -1.72
VPS53-212ENST00000572259 PAXXQ9BUH6 204 aa4.28□□□□□ -1.72
VPS53-212ENST00000572259 RHPN1-AS1Q9BWJ2 59 aa4.28□□□□□ -1.72
VPS53-212ENST00000572259 ZNF331Q9NQX6 463 aaPredicted RBP4.28□□□□□ -1.72
VPS53-212ENST00000572259 U3KQK5 164 aa4.28□□□□□ -1.72
VPS53-212ENST00000572259 A0A0J9YXY3 114 aa4.27□□□□□ -1.73
VPS53-212ENST00000572259 TMEM189A5PLL7 270 aa4.27□□□□□ -1.73
VPS53-212ENST00000572259 IZUMO1RA6ND01 250 aa4.27□□□□□ -1.73
VPS53-212ENST00000572259 ZFP92A6NM28 416 aa4.27□□□□□ -1.73
VPS53-212ENST00000572259 C9JQL5 133 aa4.27□□□□□ -1.73
VPS53-212ENST00000572259 NDUFC2-KCTD14E9PQ53 114 aa4.27□□□□□ -1.73
VPS53-212ENST00000572259 PLA2G10O15496 165 aa4.27□□□□□ -1.73
VPS53-212ENST00000572259 CFDP00746 253 aaPredicted RBP4.27□□□□□ -1.73
VPS53-212ENST00000572259 IAPPP10997 89 aa4.27□□□□□ -1.73
VPS53-212ENST00000572259 ORM2P19652 201 aa4.27□□□□□ -1.73
VPS53-212ENST00000572259 RPS20P60866 119 aaKnown RBP4.27□□□□□ -1.73
VPS53-212ENST00000572259 HERVK_113P63121 156 aa4.27□□□□□ -1.73
VPS53-212ENST00000572259 SPANXN5Q5MJ07 72 aa4.27□□□□□ -1.73
VPS53-212ENST00000572259 PRSS54Q6PEW0 395 aa4.27□□□□□ -1.73
VPS53-212ENST00000572259 TCEAL7Q9BRU2 100 aa4.27□□□□□ -1.73
VPS53-212ENST00000572259 GTSF1LQ9H1H1 148 aa4.27□□□□□ -1.73
VPS53-212ENST00000572259 HSPB8Q9UJY1 196 aa4.27□□□□□ -1.73
VPS53-212ENST00000572259 DNAH9Q9NYC9 4486 aa4.27□□□□□ -1.73
VPS53-212ENST00000572259 COL7A1Q02388 2944 aa4.26□□□□□ -1.73
VPS53-212ENST00000572259 IGHV3OR16-8A0A075B7F1 116 aa4.26□□□□□ -1.73
VPS53-212ENST00000572259 SNRPGP15A8MWD9 76 aa4.26□□□□□ -1.73
VPS53-212ENST00000572259 DEDDO75618 318 aa4.26□□□□□ -1.73
VPS53-212ENST00000572259 APOMO95445 188 aa4.26□□□□□ -1.73
VPS53-212ENST00000572259 CD7P09564 240 aa4.26□□□□□ -1.73
VPS53-212ENST00000572259 IGLC1P0CG04 106 aa4.26□□□□□ -1.73
VPS53-212ENST00000572259 TAS2R30P59541 319 aa4.26□□□□□ -1.73
VPS53-212ENST00000572259 SBSPONQ8IVN8 264 aa4.26□□□□□ -1.73
VPS53-212ENST00000572259 C12orf45Q8N5I9 185 aaPredicted RBP4.26□□□□□ -1.73
VPS53-212ENST00000572259 ZNF431Q8TF32 576 aaPredicted RBP4.26□□□□□ -1.73
VPS53-212ENST00000572259 VSIG2Q96IQ7 327 aa4.26□□□□□ -1.73
VPS53-212ENST00000572259 GGACTQ9BVM4 153 aa4.26□□□□□ -1.73
VPS53-212ENST00000572259 PSENENQ9NZ42 101 aa4.26□□□□□ -1.73
VPS53-212ENST00000572259 LAMTOR3Q9UHA4 124 aa4.26□□□□□ -1.73
VPS53-212ENST00000572259 RABAC1Q9UI14 185 aa4.26□□□□□ -1.73
VPS53-212ENST00000572259 NBEAL2Q6ZNJ1 2754 aa4.26□□□□□ -1.73
VPS53-212ENST00000572259 AGRNO00468 2067 aa4.26□□□□□ -1.73
VPS53-212ENST00000572259 IGKV3-7A0A075B6H7 116 aa4.25□□□□□ -1.73
VPS53-212ENST00000572259 LOC102724200A0A096LPH7 203 aaPredicted RBP4.25□□□□□ -1.73
VPS53-212ENST00000572259 IGHV3-49A0A0A0MS15 119 aa4.25□□□□□ -1.73
VPS53-212ENST00000572259 TRAV2A0A0B4J234 112 aa4.25□□□□□ -1.73
VPS53-212ENST00000572259 J3KT08 172 aa4.25□□□□□ -1.73
VPS53-212ENST00000572259 SSSCA1O60232 199 aa4.25□□□□□ -1.73
VPS53-212ENST00000572259 IGKV1-17P01599 117 aa4.25□□□□□ -1.73
VPS53-212ENST00000572259 IGLV2-8P01709 118 aa4.25□□□□□ -1.73
VPS53-212ENST00000572259 IL4P05112 153 aa4.25□□□□□ -1.73
VPS53-212ENST00000572259 IL5P05113 134 aa4.25□□□□□ -1.73
VPS53-212ENST00000572259 CRYBB3P26998 211 aa4.25□□□□□ -1.73
VPS53-212ENST00000572259 AKR1C1Q04828 323 aa4.25□□□□□ -1.73
VPS53-212ENST00000572259 CAMK2N1Q7Z7J9 78 aa4.25□□□□□ -1.73
VPS53-212ENST00000572259 NUP35Q8NFH5 326 aa4.25□□□□□ -1.73
VPS53-212ENST00000572259 OR10P1Q8NGE3 313 aa4.25□□□□□ -1.73
VPS53-212ENST00000572259 C2orf50Q96LR7 162 aa4.25□□□□□ -1.73
VPS53-212ENST00000572259 TRGV9Q99603 122 aa4.25□□□□□ -1.73
VPS53-212ENST00000572259 FNDC10F2Z333 226 aa4.24□□□□□ -1.73
VPS53-212ENST00000572259 SNRPD3P62318 126 aaKnown RBP4.24□□□□□ -1.73
VPS53-212ENST00000572259 RHEBQ15382 184 aa4.24□□□□□ -1.73
VPS53-212ENST00000572259 CEMP1Q6PRD7 247 aaPredicted RBP4.24□□□□□ -1.73
VPS53-212ENST00000572259 C18orf15Q96N68 181 aa4.24□□□□□ -1.73
VPS53-212ENST00000572259 TM2D3Q9BRN9 247 aa4.24□□□□□ -1.73
VPS53-212ENST00000572259 GGTLC1Q9BX51 225 aa4.24□□□□□ -1.73
VPS53-212ENST00000572259 MED28Q9H204 178 aa4.24□□□□□ -1.73
VPS53-212ENST00000572259 NPVFQ9HCQ7 196 aa4.24□□□□□ -1.73
VPS53-212ENST00000572259 MRPL36Q9P0J6 103 aaKnown RBP4.24□□□□□ -1.73
VPS53-212ENST00000572259 STAB2Q8WWQ8 2551 aa4.24□□□□□ -1.73
VPS53-212ENST00000572259 TRBV19A0A075B6N1 114 aa4.23□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms