RNA–Protein interactions for RNA: ENST00000570546.5

CIITA-204, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 2

Gene CIITA, Length 5,342 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-204ENST00000570546 IGHV4OR15-8A0A075B7B6 117 aa11.76□□□□□ -0.53
CIITA-204ENST00000570546 A0A087WW49 117 aa11.76□□□□□ -0.53
CIITA-204ENST00000570546 RNF152Q8N8N0 203 aa11.75□□□□□ -0.53
CIITA-204ENST00000570546 IGHG2P01859 326 aa11.75□□□□□ -0.53
CIITA-204ENST00000570546 WFDC2Q14508 124 aa11.75□□□□□ -0.53
CIITA-204ENST00000570546 TIMM17AQ99595 171 aa11.75□□□□□ -0.53
CIITA-204ENST00000570546 A0A096LPF7 62 aa11.74□□□□□ -0.53
CIITA-204ENST00000570546 CCL24O00175 119 aa11.74□□□□□ -0.53
CIITA-204ENST00000570546 IGLC6P0CF74 106 aa11.74□□□□□ -0.53
CIITA-204ENST00000570546 PTPRSQ13332 1948 aa11.74□□□□□ -0.53
CIITA-204ENST00000570546 MED12LQ86YW9 2145 aa11.74□□□□□ -0.53
CIITA-204ENST00000570546 SLC25A29Q8N8R3 303 aa11.74□□□□□ -0.53
CIITA-204ENST00000570546 IGHG4P01861 327 aa11.74□□□□□ -0.53
CIITA-204ENST00000570546 GPHB5Q86YW7 130 aa11.74□□□□□ -0.53
CIITA-204ENST00000570546 C15orf53Q8NAA6 179 aa11.74□□□□□ -0.53
CIITA-204ENST00000570546 ABCA1O95477 2261 aa11.74□□□□□ -0.53
CIITA-204ENST00000570546 C11orf86A6NJI1 115 aa11.74□□□□□ -0.53
CIITA-204ENST00000570546 NBASA2RRP1 2371 aa11.74□□□□□ -0.53
CIITA-204ENST00000570546 ZNF561-AS1K7EIQ3 104 aa11.73□□□□□ -0.53
CIITA-204ENST00000570546 MYCNOSP40205 109 aa11.73□□□□□ -0.53
CIITA-204ENST00000570546 TECTAO75443 2155 aa11.73□□□□□ -0.53
CIITA-204ENST00000570546 CACNA1HO95180 2353 aa11.73□□□□□ -0.53
CIITA-204ENST00000570546 LRP4O75096 1905 aa11.73□□□□□ -0.53
CIITA-204ENST00000570546 HERV-K104P63124 156 aa11.73□□□□□ -0.53
CIITA-204ENST00000570546 CLPSL2Q6UWE3 100 aa11.73□□□□□ -0.53
CIITA-204ENST00000570546 ANKRD29Q8N6D5 301 aa11.73□□□□□ -0.53
CIITA-204ENST00000570546 K7EQD1 137 aa11.72□□□□□ -0.53
CIITA-204ENST00000570546 APOC4P55056 127 aa11.72□□□□□ -0.53
CIITA-204ENST00000570546 TP73-AS1Q9UF72 201 aa11.72□□□□□ -0.53
CIITA-204ENST00000570546 ICOSQ9Y6W8 199 aa11.72□□□□□ -0.53
CIITA-204ENST00000570546 LINC01548A6NM66 108 aa11.72□□□□□ -0.53
CIITA-204ENST00000570546 CEP192Q8TEP8 1941 aa11.71□□□□□ -0.53
CIITA-204ENST00000570546 LY6LH3BQJ8 138 aa11.71□□□□□ -0.54
CIITA-204ENST00000570546 SPANXDQ9BXN6 97 aa11.71□□□□□ -0.54
CIITA-204ENST00000570546 CACNA1BQ00975 2339 aa11.71□□□□□ -0.54
CIITA-204ENST00000570546 ANGP03950 147 aaKnown RBP11.71□□□□□ -0.54
CIITA-204ENST00000570546 A6NDX4 124 aa11.7□□□□□ -0.54
CIITA-204ENST00000570546 BAALC-AS2P0C853 105 aa11.7□□□□□ -0.54
CIITA-204ENST00000570546 XCL1P47992 114 aa11.7□□□□□ -0.54
CIITA-204ENST00000570546 PRO3102Q9H379 93 aa11.7□□□□□ -0.54
CIITA-204ENST00000570546 CRIP1P50238 77 aa11.7□□□□□ -0.54
CIITA-204ENST00000570546 CRLF1O75462 422 aa11.7□□□□□ -0.54
CIITA-204ENST00000570546 MDFICQ9P1T7 246 aa11.7□□□□□ -0.54
CIITA-204ENST00000570546 NRGNQ92686 78 aa11.7□□□□□ -0.54
CIITA-204ENST00000570546 DOPEY2Q9Y3R5 2298 aa11.69□□□□□ -0.54
CIITA-204ENST00000570546 G3V4G9 280 aa11.69□□□□□ -0.54
CIITA-204ENST00000570546 TEN1Q86WV5 123 aa11.69□□□□□ -0.54
CIITA-204ENST00000570546 ARFGEF3Q5TH69 2177 aa11.69□□□□□ -0.54
CIITA-204ENST00000570546 ABCA4P78363 2273 aa11.69□□□□□ -0.54
CIITA-204ENST00000570546 FSTL3O95633 263 aa11.69□□□□□ -0.54
CIITA-204ENST00000570546 DEFB113Q30KQ7 82 aa11.69□□□□□ -0.54
CIITA-204ENST00000570546 UBE2DNLQ8IWF7 75 aa11.69□□□□□ -0.54
CIITA-204ENST00000570546 TMEM89A2RUT3 159 aa11.69□□□□□ -0.54
CIITA-204ENST00000570546 DAZ2Q13117 558 aaKnown RBP11.69□□□□□ -0.54
CIITA-204ENST00000570546 DAZ4Q86SG3 579 aaKnown RBP11.69□□□□□ -0.54
CIITA-204ENST00000570546 UBL5Q9BZL1 73 aa11.69□□□□□ -0.54
CIITA-204ENST00000570546 DAZ3Q9NR90 486 aaKnown RBP11.69□□□□□ -0.54
CIITA-204ENST00000570546 ATG2AQ2TAZ0 1938 aa11.69□□□□□ -0.54
CIITA-204ENST00000570546 C16orf74Q96GX8 76 aa11.68□□□□□ -0.54
CIITA-204ENST00000570546 A0A0J9YX75 114 aa11.68□□□□□ -0.54
CIITA-204ENST00000570546 IGLV2-11P01706 119 aa11.68□□□□□ -0.54
CIITA-204ENST00000570546 F8WEM9 126 aa11.67□□□□□ -0.54
CIITA-204ENST00000570546 LMO4P61968 165 aa11.67□□□□□ -0.54
CIITA-204ENST00000570546 LINC01620Q4KN68 170 aa11.67□□□□□ -0.54
CIITA-204ENST00000570546 TINCRA0A1B0GVN0 87 aa11.67□□□□□ -0.54
CIITA-204ENST00000570546 U3KQK5 164 aa11.67□□□□□ -0.54
CIITA-204ENST00000570546 FOXI1Q12951 378 aa11.67□□□□□ -0.54
CIITA-204ENST00000570546 C5orf38Q86SI9 138 aa11.67□□□□□ -0.54
CIITA-204ENST00000570546 PIFOQ8TCI5 191 aa11.67□□□□□ -0.54
CIITA-204ENST00000570546 OPRPNQ99935 248 aaPredicted RBP11.66□□□□□ -0.54
CIITA-204ENST00000570546 SMAD5-AS1Q9Y6J3 95 aa11.66□□□□□ -0.54
CIITA-204ENST00000570546 DAND5Q8N907 189 aa11.66□□□□□ -0.54
CIITA-204ENST00000570546 A0A0J9YY99 117 aa11.66□□□□□ -0.54
CIITA-204ENST00000570546 DEFB121Q5J5C9 76 aa11.66□□□□□ -0.54
CIITA-204ENST00000570546 C20orf203Q8NBC4 194 aa11.66□□□□□ -0.54
CIITA-204ENST00000570546 RPL32P62910 135 aaKnown RBP11.66□□□□□ -0.54
CIITA-204ENST00000570546 Q6ZQT7 251 aa11.65□□□□□ -0.54
CIITA-204ENST00000570546 SPTAN1Q13813 2472 aaKnown RBP11.65□□□□□ -0.54
CIITA-204ENST00000570546 C20orf173Q96LM9 149 aa11.65□□□□□ -0.54
CIITA-204ENST00000570546 TRBV7-3A0A075B6L6 115 aa11.64□□□□□ -0.55
CIITA-204ENST00000570546 ZFAND3Q9H8U3 227 aa11.64□□□□□ -0.55
CIITA-204ENST00000570546 PSCAO43653 123 aa11.64□□□□□ -0.55
CIITA-204ENST00000570546 ACYP1P07311 99 aa11.64□□□□□ -0.55
CIITA-204ENST00000570546 CRYBA4P53673 196 aa11.64□□□□□ -0.55
CIITA-204ENST00000570546 EBI3Q14213 229 aa11.64□□□□□ -0.55
CIITA-204ENST00000570546 NKAPP1Q8N9T2 125 aa11.64□□□□□ -0.55
CIITA-204ENST00000570546 HAMPP81172 84 aa11.64□□□□□ -0.55
CIITA-204ENST00000570546 NDUFA11Q86Y39 141 aa11.63□□□□□ -0.55
CIITA-204ENST00000570546 COX7B2Q8TF08 81 aa11.63□□□□□ -0.55
CIITA-204ENST00000570546 RNF185Q96GF1 192 aa11.63□□□□□ -0.55
CIITA-204ENST00000570546 Q71RC1 249 aaPredicted RBP11.63□□□□□ -0.55
CIITA-204ENST00000570546 SND1-IT1Q9HBX3 110 aa11.63□□□□□ -0.55
CIITA-204ENST00000570546 ORMDL1Q9P0S3 153 aa11.63□□□□□ -0.55
CIITA-204ENST00000570546 MED13LQ71F56 2210 aa11.63□□□□□ -0.55
CIITA-204ENST00000570546 IGF1P05019 195 aa11.63□□□□□ -0.55
CIITA-204ENST00000570546 C4orf3Q8WVX3 66 aa11.63□□□□□ -0.55
CIITA-204ENST00000570546 DSCR8Q96T75 97 aa11.63□□□□□ -0.55
CIITA-204ENST00000570546 NEXN-AS1Q8NBZ9 246 aa11.63□□□□□ -0.55
CIITA-204ENST00000570546 IGHV1-58A0A0C4DH39 117 aa11.62□□□□□ -0.55
CIITA-204ENST00000570546 VSIG2Q96IQ7 327 aa11.62□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms