RNA–Protein interactions for RNA: ENST00000570359.1

VPS53-206, Transcript of VPS53, GARP complex subunit, humanhuman

Gene VPS53, Length 2,781 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-206ENST00000570359 BRI3O95415 125 aa7.4□□□□□ -1.23
VPS53-206ENST00000570359 AMMECR1LQ6DCA0 310 aa7.4□□□□□ -1.23
VPS53-206ENST00000570359 Q6ZSV7 163 aa7.4□□□□□ -1.23
VPS53-206ENST00000570359 IGHV3OR16-12A0A075B7B8 117 aa7.39□□□□□ -1.23
VPS53-206ENST00000570359 A0A0J9YX75 114 aa7.39□□□□□ -1.23
VPS53-206ENST00000570359 K7EQG2 157 aa7.39□□□□□ -1.23
VPS53-206ENST00000570359 LRRC75A-AS1Q8N1F1 130 aa7.39□□□□□ -1.23
VPS53-206ENST00000570359 OR1N2Q8NGR9 330 aa7.39□□□□□ -1.23
VPS53-206ENST00000570359 NXT2Q9NPJ8 142 aaKnown RBP7.39□□□□□ -1.23
VPS53-206ENST00000570359 LENEPQ9Y5L5 61 aa7.39□□□□□ -1.23
VPS53-206ENST00000570359 LINC01619G3V211 115 aa7.39□□□□□ -1.23
VPS53-206ENST00000570359 Q8N1Y9 231 aa7.39□□□□□ -1.23
VPS53-206ENST00000570359 RASL10AQ92737 203 aa7.39□□□□□ -1.23
VPS53-206ENST00000570359 AP1S3Q96PC3 154 aa7.39□□□□□ -1.23
VPS53-206ENST00000570359 DPH3P1Q9H4G8 78 aa7.39□□□□□ -1.23
VPS53-206ENST00000570359 TMEM160Q9NX00 188 aa7.39□□□□□ -1.23
VPS53-206ENST00000570359 KMT2BQ9UMN6 2715 aaPredicted RBP7.39□□□□□ -1.23
VPS53-206ENST00000570359 ZNF56Q15929 161 aa7.38□□□□□ -1.23
VPS53-206ENST00000570359 UFSP1Q6NVU6 142 aa7.38□□□□□ -1.23
VPS53-206ENST00000570359 Q8N8P6 123 aa7.38□□□□□ -1.23
VPS53-206ENST00000570359 CD28P10747 220 aa7.38□□□□□ -1.23
VPS53-206ENST00000570359 FCER1GP30273 86 aa7.38□□□□□ -1.23
VPS53-206ENST00000570359 LAGE3Q14657 143 aa7.38□□□□□ -1.23
VPS53-206ENST00000570359 FAM19A4Q96LR4 140 aa7.38□□□□□ -1.23
VPS53-206ENST00000570359 SCRT2Q9NQ03 307 aa7.38□□□□□ -1.23
VPS53-206ENST00000570359 ZNF256Q9Y2P7 627 aaPredicted RBP7.38□□□□□ -1.23
VPS53-206ENST00000570359 KLLNB2CW77 178 aa7.37□□□□□ -1.23
VPS53-206ENST00000570359 GTSCR1Q86UQ5 136 aa7.37□□□□□ -1.23
VPS53-206ENST00000570359 PCP2Q8IVA1 136 aa7.37□□□□□ -1.23
VPS53-206ENST00000570359 OR9G4Q8NGQ1 327 aa7.37□□□□□ -1.23
VPS53-206ENST00000570359 EMP1P54849 157 aa7.37□□□□□ -1.23
VPS53-206ENST00000570359 GTF2H5Q6ZYL4 71 aa7.37□□□□□ -1.23
VPS53-206ENST00000570359 SMIM2Q9BVW6 85 aa7.37□□□□□ -1.23
VPS53-206ENST00000570359 SUMO2P61956 95 aaKnown RBP7.37□□□□□ -1.23
VPS53-206ENST00000570359 SEC11AP67812 179 aa7.37□□□□□ -1.23
VPS53-206ENST00000570359 CD300EQ496F6 205 aaPredicted RBP7.37□□□□□ -1.23
VPS53-206ENST00000570359 ZC2HC1BQ5TFG8 222 aa7.37□□□□□ -1.23
VPS53-206ENST00000570359 RBMY1A1P0DJD3 496 aaKnown RBP7.36□□□□□ -1.23
VPS53-206ENST00000570359 RBMY1CP0DJD4 496 aa7.36□□□□□ -1.23
VPS53-206ENST00000570359 RBMY1FQ15415 496 aaKnown RBP7.36□□□□□ -1.23
VPS53-206ENST00000570359 MYOZ3Q8TDC0 251 aa7.36□□□□□ -1.23
VPS53-206ENST00000570359 IGLV2-18A0A075B6J9 118 aa7.36□□□□□ -1.23
VPS53-206ENST00000570359 RIPPLY3P57055 190 aa7.36□□□□□ -1.23
VPS53-206ENST00000570359 CITED2Q99967 270 aaPredicted RBP7.36□□□□□ -1.23
VPS53-206ENST00000570359 MRPL35Q9NZE8 188 aaKnown RBP7.36□□□□□ -1.23
VPS53-206ENST00000570359 ZNF580Q9UK33 172 aa7.36□□□□□ -1.23
VPS53-206ENST00000570359 TRAV8-6A0A0B4J262 113 aa7.35□□□□□ -1.23
VPS53-206ENST00000570359 TMEM89A2RUT3 159 aa7.35□□□□□ -1.23
VPS53-206ENST00000570359 NSUN5P1Q3KNT7 163 aa7.35□□□□□ -1.23
VPS53-206ENST00000570359 ZNF876PQ49A33 203 aa7.35□□□□□ -1.23
VPS53-206ENST00000570359 SUMO4Q6EEV6 95 aa7.35□□□□□ -1.23
VPS53-206ENST00000570359 IGHV1OR15-1A0A075B7D0 117 aa7.35□□□□□ -1.23
VPS53-206ENST00000570359 IGKV2D-26A0A0A0MRZ7 120 aa7.35□□□□□ -1.23
VPS53-206ENST00000570359 GAGE10A6NGK3 116 aa7.35□□□□□ -1.23
VPS53-206ENST00000570359 SAP30O75446 220 aa7.35□□□□□ -1.23
VPS53-206ENST00000570359 LGALS9BQ3B8N2 356 aa7.35□□□□□ -1.23
VPS53-206ENST00000570359 SAMD13Q5VXD3 122 aa7.35□□□□□ -1.23
VPS53-206ENST00000570359 LGALS9CQ6DKI2 356 aa7.35□□□□□ -1.23
VPS53-206ENST00000570359 C4orf3Q8WVX3 66 aa7.35□□□□□ -1.23
VPS53-206ENST00000570359 MRAP2Q96G30 205 aa7.35□□□□□ -1.23
VPS53-206ENST00000570359 RAX2Q96IS3 184 aa7.35□□□□□ -1.23
VPS53-206ENST00000570359 SCGB3A1Q96QR1 104 aa7.35□□□□□ -1.23
VPS53-206ENST00000570359 NAA38Q9BRA0 125 aaKnown RBP7.35□□□□□ -1.23
VPS53-206ENST00000570359 IGHV3-16A0A0C4DH30 117 aa7.34□□□□□ -1.23
VPS53-206ENST00000570359 K7EMI3 77 aa7.34□□□□□ -1.23
VPS53-206ENST00000570359 LGALS9O00182 355 aa7.34□□□□□ -1.23
VPS53-206ENST00000570359 ODF1Q14990 250 aa7.34□□□□□ -1.23
VPS53-206ENST00000570359 XCL2Q9UBD3 114 aa7.34□□□□□ -1.23
VPS53-206ENST00000570359 PEMTQ9UBM1 199 aa7.34□□□□□ -1.23
VPS53-206ENST00000570359 IGHV4-4A0A075B6R2 117 aa7.34□□□□□ -1.23
VPS53-206ENST00000570359 RBMY1BA6NDE4 496 aaKnown RBP7.34□□□□□ -1.23
VPS53-206ENST00000570359 RBMY1EA6NEQ0 496 aaKnown RBP7.34□□□□□ -1.23
VPS53-206ENST00000570359 RBMY1DP0C7P1 496 aaKnown RBP7.34□□□□□ -1.23
VPS53-206ENST00000570359 P0DMU3 169 aa7.34□□□□□ -1.23
VPS53-206ENST00000570359 FAM231AP0DMU4 169 aa7.34□□□□□ -1.23
VPS53-206ENST00000570359 FAM231CP0DMU5 169 aa7.34□□□□□ -1.23
VPS53-206ENST00000570359 PROK1P58294 105 aa7.34□□□□□ -1.23
VPS53-206ENST00000570359 RPL39P62891 51 aaKnown RBP7.34□□□□□ -1.23
VPS53-206ENST00000570359 OTOGQ6ZRI0 2925 aa7.33□□□□□ -1.24
VPS53-206ENST00000570359 A0A1B0GV72 72 aa7.33□□□□□ -1.24
VPS53-206ENST00000570359 COX8AP10176 69 aa7.33□□□□□ -1.24
VPS53-206ENST00000570359 FOXI2Q6ZQN5 318 aa7.33□□□□□ -1.24
VPS53-206ENST00000570359 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP7.33□□□□□ -1.24
VPS53-206ENST00000570359 IGKCP01834 107 aa7.33□□□□□ -1.24
VPS53-206ENST00000570359 C2orf66Q6UXQ4 117 aa7.33□□□□□ -1.24
VPS53-206ENST00000570359 WFDC10AQ9H1F0 79 aa7.33□□□□□ -1.24
VPS53-206ENST00000570359 H3BRM9 83 aa7.32□□□□□ -1.24
VPS53-206ENST00000570359 K7EP34 96 aa7.32□□□□□ -1.24
VPS53-206ENST00000570359 DUSP14O95147 198 aaKnown RBP7.32□□□□□ -1.24
VPS53-206ENST00000570359 KRTAP1-1Q07627 177 aa7.32□□□□□ -1.24
VPS53-206ENST00000570359 OR5A1Q8NGJ0 315 aa7.32□□□□□ -1.24
VPS53-206ENST00000570359 MAP6D1Q9H9H5 199 aa7.32□□□□□ -1.24
VPS53-206ENST00000570359 FLNBO75369 2602 aaKnown RBP7.32□□□□□ -1.24
VPS53-206ENST00000570359 C9orf118A6NHY6 69 aa7.32□□□□□ -1.24
VPS53-206ENST00000570359 CCL24O00175 119 aa7.32□□□□□ -1.24
VPS53-206ENST00000570359 C2orf91Q6ZV80 131 aa7.32□□□□□ -1.24
VPS53-206ENST00000570359 LINC01587Q99440 93 aa7.32□□□□□ -1.24
VPS53-206ENST00000570359 AMTNQ6UX39 209 aa7.31□□□□□ -1.24
VPS53-206ENST00000570359 TP53TG1Q9Y2A0 90 aa7.31□□□□□ -1.24
VPS53-206ENST00000570359 SDHAF1A6NFY7 115 aa7.31□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 44.9 ms