RNA–Protein interactions for RNA: ENST00000568029.5

VPS39-209, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 5

Gene VPS39, Length 791 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-209ENST00000568029 ERCC8Q13216 396 aa4.42□□□□□ -1.7
VPS39-209ENST00000568029 RNASEKQ6P5S7 137 aaKnown RBP4.42□□□□□ -1.7
VPS39-209ENST00000568029 LYZL1Q6UWQ5 148 aa4.42□□□□□ -1.7
VPS39-209ENST00000568029 ZNF493Q6ZR52 646 aa4.42□□□□□ -1.7
VPS39-209ENST00000568029 SMIM15Q7Z3B0 74 aa4.42□□□□□ -1.7
VPS39-209ENST00000568029 GPHB5Q86YW7 130 aa4.42□□□□□ -1.7
VPS39-209ENST00000568029 RNF182Q8N6D2 247 aa4.42□□□□□ -1.7
VPS39-209ENST00000568029 FER1L6-AS1Q8NA97 138 aa4.42□□□□□ -1.7
VPS39-209ENST00000568029 ZNF738Q8NE65 137 aa4.42□□□□□ -1.7
VPS39-209ENST00000568029 OR10J6PQ8NGY7 276 aa4.42□□□□□ -1.7
VPS39-209ENST00000568029 TPPP3Q9BW30 176 aa4.42□□□□□ -1.7
VPS39-209ENST00000568029 AGPAT4-IT1Q9H0P7 198 aa4.42□□□□□ -1.7
VPS39-209ENST00000568029 DAZ1Q9NQZ3 744 aaKnown RBP4.42□□□□□ -1.7
VPS39-209ENST00000568029 SMPXQ9UHP9 88 aa4.42□□□□□ -1.7
VPS39-209ENST00000568029 VPREB3Q9UKI3 123 aa4.42□□□□□ -1.7
VPS39-209ENST00000568029 PLXNB1O43157 2135 aa4.42□□□□□ -1.7
VPS39-209ENST00000568029 TRAV8-2A0A0B4J237 113 aa4.41□□□□□ -1.7
VPS39-209ENST00000568029 TRBV12-3P01733 135 aa4.41□□□□□ -1.7
VPS39-209ENST00000568029 LINC00614P0C842 121 aa4.41□□□□□ -1.7
VPS39-209ENST00000568029 PSMB8P28062 276 aa4.41□□□□□ -1.7
VPS39-209ENST00000568029 DDTP30046 118 aa4.41□□□□□ -1.7
VPS39-209ENST00000568029 CTRLP40313 264 aa4.41□□□□□ -1.7
VPS39-209ENST00000568029 KPRPQ5T749 579 aaPredicted RBP4.41□□□□□ -1.7
VPS39-209ENST00000568029 FAM104BQ5XKR9 115 aa4.41□□□□□ -1.7
VPS39-209ENST00000568029 ZNF664Q8N3J9 261 aa4.41□□□□□ -1.7
VPS39-209ENST00000568029 Q8TAT8 98 aa4.41□□□□□ -1.7
VPS39-209ENST00000568029 RCHY1Q96PM5 261 aa4.41□□□□□ -1.7
VPS39-209ENST00000568029 VAMP8Q9BV40 100 aa4.41□□□□□ -1.7
VPS39-209ENST00000568029 RHPN1-AS1Q9BWJ2 59 aa4.41□□□□□ -1.7
VPS39-209ENST00000568029 PRO1933Q9H354 126 aa4.41□□□□□ -1.7
VPS39-209ENST00000568029 NOTCH3Q9UM47 2321 aa4.41□□□□□ -1.7
VPS39-209ENST00000568029 PLECQ15149 4684 aaKnown RBP4.41□□□□□ -1.7
VPS39-209ENST00000568029 KIAA1109Q2LD37 5005 aa4.4□□□□□ -1.7
VPS39-209ENST00000568029 TRBV7-9A0A0J9YWB2 115 aa4.4□□□□□ -1.71
VPS39-209ENST00000568029 PPBPP02775 128 aa4.4□□□□□ -1.71
VPS39-209ENST00000568029 IGLC6P0CF74 106 aa4.4□□□□□ -1.71
VPS39-209ENST00000568029 PRB4P10163 310 aaPredicted RBP4.4□□□□□ -1.71
VPS39-209ENST00000568029 ZNF80P51504 273 aaPredicted RBP4.4□□□□□ -1.71
VPS39-209ENST00000568029 PMCHL1Q16048 86 aa4.4□□□□□ -1.71
VPS39-209ENST00000568029 LCE1AQ5T7P2 110 aa4.4□□□□□ -1.71
VPS39-209ENST00000568029 UNQ9165/PRO28630Q6UXU0 137 aa4.4□□□□□ -1.71
VPS39-209ENST00000568029 TEX43Q6ZNM6 134 aa4.4□□□□□ -1.71
VPS39-209ENST00000568029 FA2HQ7L5A8 372 aa4.4□□□□□ -1.71
VPS39-209ENST00000568029 FAM19A2Q8N3H0 131 aa4.4□□□□□ -1.71
VPS39-209ENST00000568029 TMEM86BQ8N661 226 aa4.4□□□□□ -1.71
VPS39-209ENST00000568029 U3KQK5 164 aa4.4□□□□□ -1.71
VPS39-209ENST00000568029 TRAV21A0A0B4J279 112 aa4.39□□□□□ -1.71
VPS39-209ENST00000568029 C20orf202A1L168 122 aa4.39□□□□□ -1.71
VPS39-209ENST00000568029 C3orf79P0CE67 100 aa4.39□□□□□ -1.71
VPS39-209ENST00000568029 CKS2P33552 79 aa4.39□□□□□ -1.71
VPS39-209ENST00000568029 CACNG7P62955 275 aa4.39□□□□□ -1.71
VPS39-209ENST00000568029 CTAG1AP78358 180 aa4.39□□□□□ -1.71
VPS39-209ENST00000568029 NFE4Q86UQ8 179 aa4.39□□□□□ -1.71
VPS39-209ENST00000568029 ORMDL3Q8N138 153 aa4.39□□□□□ -1.71
VPS39-209ENST00000568029 KLHDC1Q8N7A1 406 aa4.39□□□□□ -1.71
VPS39-209ENST00000568029 UBE2E2Q96LR5 201 aa4.39□□□□□ -1.71
VPS39-209ENST00000568029 PRELID3AQ96N28 172 aa4.39□□□□□ -1.71
VPS39-209ENST00000568029 C20orf144Q9BQM9 153 aa4.39□□□□□ -1.71
VPS39-209ENST00000568029 TMEM70Q9BUB7 260 aa4.39□□□□□ -1.71
VPS39-209ENST00000568029 CNFNQ9BYD5 112 aa4.39□□□□□ -1.71
VPS39-209ENST00000568029 TMEM191AQ9H0A3 160 aa4.39□□□□□ -1.71
VPS39-209ENST00000568029 HSPB8Q9UJY1 196 aa4.39□□□□□ -1.71
VPS39-209ENST00000568029 LAMTOR2Q9Y2Q5 125 aa4.39□□□□□ -1.71
VPS39-209ENST00000568029 IGLV5-45A0A087WSX0 123 aa4.38□□□□□ -1.71
VPS39-209ENST00000568029 TMEM213A2RRL7 107 aa4.38□□□□□ -1.71
VPS39-209ENST00000568029 LGALS9O00182 355 aa4.38□□□□□ -1.71
VPS39-209ENST00000568029 SOCS3O14543 225 aa4.38□□□□□ -1.71
VPS39-209ENST00000568029 LEPROTL1O95214 131 aa4.38□□□□□ -1.71
VPS39-209ENST00000568029 CSN3P07498 182 aa4.38□□□□□ -1.71
VPS39-209ENST00000568029 LGALS1P09382 135 aaKnown RBP4.38□□□□□ -1.71
VPS39-209ENST00000568029 SSTP61278 116 aa4.38□□□□□ -1.71
VPS39-209ENST00000568029 SCGB2A2Q13296 93 aa4.38□□□□□ -1.71
VPS39-209ENST00000568029 MRPL51Q4U2R6 128 aaKnown RBP4.38□□□□□ -1.71
VPS39-209ENST00000568029 LBHQ53QV2 105 aaPredicted RBP4.38□□□□□ -1.71
VPS39-209ENST00000568029 OR8A1Q8NGG7 326 aa4.38□□□□□ -1.71
VPS39-209ENST00000568029 OR10AG1Q8NH19 301 aa4.38□□□□□ -1.71
VPS39-209ENST00000568029 NDUFAF3Q9BU61 184 aa4.38□□□□□ -1.71
VPS39-209ENST00000568029 MAP1LC3CQ9BXW4 147 aa4.38□□□□□ -1.71
VPS39-209ENST00000568029 ZNF702PQ9H963 129 aa4.38□□□□□ -1.71
VPS39-209ENST00000568029 HECTD4Q9Y4D8 3996 aa4.38□□□□□ -1.71
VPS39-209ENST00000568029 ALMS1Q8TCU4 4167 aa4.37□□□□□ -1.71
VPS39-209ENST00000568029 IGKV3-7A0A075B6H7 116 aa4.37□□□□□ -1.71
VPS39-209ENST00000568029 IGHV4-4A0A075B6R2 117 aa4.37□□□□□ -1.71
VPS39-209ENST00000568029 IGKV3D-20A0A0C4DH25 116 aa4.37□□□□□ -1.71
VPS39-209ENST00000568029 KIR2DL5BA0A0G2JN68 375 aa4.37□□□□□ -1.71
VPS39-209ENST00000568029 KIR2DL5BA0A0G2JPC4 375 aa4.37□□□□□ -1.71
VPS39-209ENST00000568029 D6R8Y8 96 aa4.37□□□□□ -1.71
VPS39-209ENST00000568029 DUSP14O95147 198 aaKnown RBP4.37□□□□□ -1.71
VPS39-209ENST00000568029 S100A4P26447 101 aaKnown RBP4.37□□□□□ -1.71
VPS39-209ENST00000568029 RNASE4P34096 147 aaKnown RBP4.37□□□□□ -1.71
VPS39-209ENST00000568029 LEPP41159 167 aa4.37□□□□□ -1.71
VPS39-209ENST00000568029 SNRPD3P62318 126 aaKnown RBP4.37□□□□□ -1.71
VPS39-209ENST00000568029 SPANXN1Q5VSR9 72 aa4.37□□□□□ -1.71
VPS39-209ENST00000568029 PET117Q6UWS5 81 aa4.37□□□□□ -1.71
VPS39-209ENST00000568029 AMN1Q8IY45 258 aa4.37□□□□□ -1.71
VPS39-209ENST00000568029 KIR2DL5AQ8N109 375 aa4.37□□□□□ -1.71
VPS39-209ENST00000568029 Q8N2B8 174 aa4.37□□□□□ -1.71
VPS39-209ENST00000568029 MYOZ3Q8TDC0 251 aa4.37□□□□□ -1.71
VPS39-209ENST00000568029 MIEN1Q9BRT3 115 aa4.37□□□□□ -1.71
VPS39-209ENST00000568029 MAP1LC3AQ9H492 121 aa4.37□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 42.4 ms