RNA–Protein interactions for RNA: ENST00000567992.1

CLK3-220, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 603 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-220ENST00000567992 YPEL4Q96NS1 127 aa6.76□□□□□ -1.33
CLK3-220ENST00000567992 UPK3BQ9BT76 320 aa6.76□□□□□ -1.33
CLK3-220ENST00000567992 PARLQ9H300 379 aa6.76□□□□□ -1.33
CLK3-220ENST00000567992 JPT2Q9H910 190 aa6.76□□□□□ -1.33
CLK3-220ENST00000567992 ICOSQ9Y6W8 199 aa6.76□□□□□ -1.33
CLK3-220ENST00000567992 IGHV3-73A0A0B4J1V6 119 aa6.75□□□□□ -1.33
CLK3-220ENST00000567992 LOC100131303A0A0U1RQF7 123 aa6.75□□□□□ -1.33
CLK3-220ENST00000567992 C1orf196B1AJZ1 125 aa6.75□□□□□ -1.33
CLK3-220ENST00000567992 TMEM250H0YL14 139 aa6.75□□□□□ -1.33
CLK3-220ENST00000567992 SNAI2O43623 268 aa6.75□□□□□ -1.33
CLK3-220ENST00000567992 GYPEP15421 78 aa6.75□□□□□ -1.33
CLK3-220ENST00000567992 RAB5BP61020 215 aa6.75□□□□□ -1.33
CLK3-220ENST00000567992 SLC25A29Q8N8R3 303 aa6.75□□□□□ -1.33
CLK3-220ENST00000567992 SSBP4Q9BWG4 385 aaPredicted RBP6.75□□□□□ -1.33
CLK3-220ENST00000567992 SAMD10Q9BYL1 202 aa6.75□□□□□ -1.33
CLK3-220ENST00000567992 MRPS16Q9Y3D3 137 aaKnown RBP6.75□□□□□ -1.33
CLK3-220ENST00000567992 PKHD1P08F94 4074 aa6.75□□□□□ -1.33
CLK3-220ENST00000567992 DYNC1H1Q14204 4646 aaKnown RBP6.74□□□□□ -1.33
CLK3-220ENST00000567992 A8MWV9 139 aa6.74□□□□□ -1.33
CLK3-220ENST00000567992 K7EN84 100 aa6.74□□□□□ -1.33
CLK3-220ENST00000567992 M0R2N4 97 aa6.74□□□□□ -1.33
CLK3-220ENST00000567992 MGST1P10620 155 aaKnown RBP6.74□□□□□ -1.33
CLK3-220ENST00000567992 RAB5AP20339 215 aa6.74□□□□□ -1.33
CLK3-220ENST00000567992 PNRC1Q12796 327 aaPredicted RBP6.74□□□□□ -1.33
CLK3-220ENST00000567992 ZFP2Q6ZN57 461 aa6.74□□□□□ -1.33
CLK3-220ENST00000567992 Q6ZSN1 163 aa6.74□□□□□ -1.33
CLK3-220ENST00000567992 OR10AG1Q8NH19 301 aa6.74□□□□□ -1.33
CLK3-220ENST00000567992 SFRP2Q96HF1 295 aa6.74□□□□□ -1.33
CLK3-220ENST00000567992 PHLDA3Q9Y5J5 127 aa6.74□□□□□ -1.33
CLK3-220ENST00000567992 TRBV6-4A0A1B0GX49 114 aa6.73□□□□□ -1.33
CLK3-220ENST00000567992 M0R381 172 aa6.73□□□□□ -1.33
CLK3-220ENST00000567992 CIDEAO60543 219 aa6.73□□□□□ -1.33
CLK3-220ENST00000567992 OR5AL1P0C617 328 aa6.73□□□□□ -1.33
CLK3-220ENST00000567992 IGLC6P0CF74 106 aa6.73□□□□□ -1.33
CLK3-220ENST00000567992 LINC00694P0DN24 101 aa6.73□□□□□ -1.33
CLK3-220ENST00000567992 GZMBP10144 247 aa6.73□□□□□ -1.33
CLK3-220ENST00000567992 MRPL23Q16540 153 aaKnown RBP6.73□□□□□ -1.33
CLK3-220ENST00000567992 LYPD5Q6UWN5 251 aa6.73□□□□□ -1.33
CLK3-220ENST00000567992 LINC00518Q8N0U6 118 aa6.73□□□□□ -1.33
CLK3-220ENST00000567992 ZFP82Q8N141 532 aa6.73□□□□□ -1.33
CLK3-220ENST00000567992 SYT8Q8NBV8 401 aa6.73□□□□□ -1.33
CLK3-220ENST00000567992 OCC1Q8TAD7 63 aa6.73□□□□□ -1.33
CLK3-220ENST00000567992 KRTAP1-5Q9BYS1 174 aa6.73□□□□□ -1.33
CLK3-220ENST00000567992 TMEM242Q9NWH2 141 aa6.73□□□□□ -1.33
CLK3-220ENST00000567992 NBDYA0A0U1RRE5 68 aa6.72□□□□□ -1.33
CLK3-220ENST00000567992 RTL8CO15255 209 aa6.72□□□□□ -1.33
CLK3-220ENST00000567992 CRYGDP07320 174 aa6.72□□□□□ -1.33
CLK3-220ENST00000567992 SRIP30626 198 aa6.72□□□□□ -1.33
CLK3-220ENST00000567992 RHOHQ15669 191 aa6.72□□□□□ -1.33
CLK3-220ENST00000567992 NEGR1Q7Z3B1 354 aa6.72□□□□□ -1.33
CLK3-220ENST00000567992 OR2D3Q8NGH3 330 aa6.72□□□□□ -1.33
CLK3-220ENST00000567992 Q9H8V8 135 aa6.72□□□□□ -1.33
CLK3-220ENST00000567992 Q9UF83 564 aa6.72□□□□□ -1.33
CLK3-220ENST00000567992 A0A087WWL8 130 aa6.71□□□□□ -1.34
CLK3-220ENST00000567992 MUC21A0A0G2JKD1 596 aa6.71□□□□□ -1.34
CLK3-220ENST00000567992 MUC21A0A140T8X8 626 aa6.71□□□□□ -1.34
CLK3-220ENST00000567992 C5orf52A6NGY3 159 aa6.71□□□□□ -1.34
CLK3-220ENST00000567992 RHODO00212 210 aa6.71□□□□□ -1.34
CLK3-220ENST00000567992 P01737 135 aa6.71□□□□□ -1.34
CLK3-220ENST00000567992 C14orf178Q8N769 122 aaPredicted RBP6.71□□□□□ -1.34
CLK3-220ENST00000567992 NUDT10Q8NFP7 164 aa6.71□□□□□ -1.34
CLK3-220ENST00000567992 ISOC2Q96AB3 205 aa6.71□□□□□ -1.34
CLK3-220ENST00000567992 NUDT11Q96G61 164 aa6.71□□□□□ -1.34
CLK3-220ENST00000567992 RNASE7Q9H1E1 156 aaKnown RBP6.71□□□□□ -1.34
CLK3-220ENST00000567992 DNAH5Q8TE73 4624 aa6.7□□□□□ -1.34
CLK3-220ENST00000567992 TIRAPP58753 221 aa6.7□□□□□ -1.34
CLK3-220ENST00000567992 RPS20P60866 119 aaKnown RBP6.7□□□□□ -1.34
CLK3-220ENST00000567992 FAM74A4Q5TZK3 123 aa6.7□□□□□ -1.34
CLK3-220ENST00000567992 DAZAP1Q96EP5 407 aaKnown RBP6.7□□□□□ -1.34
CLK3-220ENST00000567992 SMIM7Q9BQ49 75 aa6.7□□□□□ -1.34
CLK3-220ENST00000567992 PRADC1Q9BSG0 188 aa6.7□□□□□ -1.34
CLK3-220ENST00000567992 CTDSP1Q9GZU7 261 aa6.7□□□□□ -1.34
CLK3-220ENST00000567992 LY96Q9Y6Y9 160 aa6.7□□□□□ -1.34
CLK3-220ENST00000567992 KIF25-AS1Q9Y6Z4 181 aa6.7□□□□□ -1.34
CLK3-220ENST00000567992 ZNF727A8MUV8 499 aa6.69□□□□□ -1.34
CLK3-220ENST00000567992 CTRLP40313 264 aa6.69□□□□□ -1.34
CLK3-220ENST00000567992 CEBPGP53567 150 aa6.69□□□□□ -1.34
CLK3-220ENST00000567992 LINC00315P59091 139 aa6.69□□□□□ -1.34
CLK3-220ENST00000567992 FAM231DQ6ZW35 169 aa6.69□□□□□ -1.34
CLK3-220ENST00000567992 LINC01551Q86U37 167 aa6.69□□□□□ -1.34
CLK3-220ENST00000567992 WFDC10BQ8IUB3 73 aa6.69□□□□□ -1.34
CLK3-220ENST00000567992 FER1L6-AS1Q8NA97 138 aa6.69□□□□□ -1.34
CLK3-220ENST00000567992 RPP21Q9H633 154 aaKnown RBP6.69□□□□□ -1.34
CLK3-220ENST00000567992 NAT8Q9UHE5 227 aa6.69□□□□□ -1.34
CLK3-220ENST00000567992 GAGE12JA6NER3 117 aa6.68□□□□□ -1.34
CLK3-220ENST00000567992 SIVA1O15304 175 aa6.68□□□□□ -1.34
CLK3-220ENST00000567992 S100A8P05109 93 aa6.68□□□□□ -1.34
CLK3-220ENST00000567992 S100A6P06703 90 aa6.68□□□□□ -1.34
CLK3-220ENST00000567992 SNRPEP62304 92 aaKnown RBP6.68□□□□□ -1.34
CLK3-220ENST00000567992 GAGE1Q13065 139 aa6.68□□□□□ -1.34
CLK3-220ENST00000567992 GAGE4Q13068 117 aa6.68□□□□□ -1.34
CLK3-220ENST00000567992 GAGE5Q13069 117 aa6.68□□□□□ -1.34
CLK3-220ENST00000567992 ELOBQ15370 118 aa6.68□□□□□ -1.34
CLK3-220ENST00000567992 TMEM241Q24JQ0 296 aa6.68□□□□□ -1.34
CLK3-220ENST00000567992 GAGE13Q4V321 117 aa6.68□□□□□ -1.34
CLK3-220ENST00000567992 SPANXN1Q5VSR9 72 aa6.68□□□□□ -1.34
CLK3-220ENST00000567992 SH2D6Q7Z4S9 175 aa6.68□□□□□ -1.34
CLK3-220ENST00000567992 GTSF1Q8WW33 167 aa6.68□□□□□ -1.34
CLK3-220ENST00000567992 TPPP3Q9BW30 176 aa6.68□□□□□ -1.34
CLK3-220ENST00000567992 CNFNQ9BYD5 112 aa6.68□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 43.9 ms