RNA–Protein interactions for RNA: ENST00000562626.1

CLK3-208, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 812 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-208ENST00000562626 FAM74A4Q5TZK3 123 aa6.79□□□□□ -1.32
CLK3-208ENST00000562626 C14orf178Q8N769 122 aaPredicted RBP6.79□□□□□ -1.32
CLK3-208ENST00000562626 HHLA3Q9XRX5 114 aa6.79□□□□□ -1.32
CLK3-208ENST00000562626 TMEM218A2RU14 115 aa6.78□□□□□ -1.32
CLK3-208ENST00000562626 A8MWV9 139 aa6.78□□□□□ -1.32
CLK3-208ENST00000562626 P0DMU3 169 aa6.78□□□□□ -1.32
CLK3-208ENST00000562626 FAM231AP0DMU4 169 aa6.78□□□□□ -1.32
CLK3-208ENST00000562626 FAM231CP0DMU5 169 aa6.78□□□□□ -1.32
CLK3-208ENST00000562626 FOXA3P55318 350 aaPredicted RBP6.78□□□□□ -1.32
CLK3-208ENST00000562626 PIK3CD-AS1Q5SR53 167 aa6.78□□□□□ -1.32
CLK3-208ENST00000562626 UQCC3Q6UW78 93 aa6.78□□□□□ -1.32
CLK3-208ENST00000562626 SLC25A29Q8N8R3 303 aa6.78□□□□□ -1.32
CLK3-208ENST00000562626 SYT8Q8NBV8 401 aa6.78□□□□□ -1.32
CLK3-208ENST00000562626 OR10G8Q8NGN5 311 aa6.78□□□□□ -1.32
CLK3-208ENST00000562626 FAM210BQ96KR6 192 aa6.78□□□□□ -1.32
CLK3-208ENST00000562626 PGLYRP4Q96LB8 373 aa6.78□□□□□ -1.32
CLK3-208ENST00000562626 PRO0255Q9UI72 69 aa6.78□□□□□ -1.32
CLK3-208ENST00000562626 K7EQD1 137 aa6.77□□□□□ -1.33
CLK3-208ENST00000562626 PAX4O43316 350 aa6.77□□□□□ -1.33
CLK3-208ENST00000562626 LY6G6CO95867 125 aa6.77□□□□□ -1.33
CLK3-208ENST00000562626 GYPEP15421 78 aa6.77□□□□□ -1.33
CLK3-208ENST00000562626 CT83Q5H943 113 aa6.77□□□□□ -1.33
CLK3-208ENST00000562626 SPANXN1Q5VSR9 72 aa6.77□□□□□ -1.33
CLK3-208ENST00000562626 CNFNQ9BYD5 112 aa6.77□□□□□ -1.33
CLK3-208ENST00000562626 HIGD1CA8MV81 97 aa6.76□□□□□ -1.33
CLK3-208ENST00000562626 A8MWL6 223 aa6.76□□□□□ -1.33
CLK3-208ENST00000562626 H3BNG1 76 aa6.76□□□□□ -1.33
CLK3-208ENST00000562626 LINC00694P0DN24 101 aa6.76□□□□□ -1.33
CLK3-208ENST00000562626 NTF3P20783 257 aa6.76□□□□□ -1.33
CLK3-208ENST00000562626 EVI2AP22794 236 aa6.76□□□□□ -1.33
CLK3-208ENST00000562626 TCTAP57738 103 aa6.76□□□□□ -1.33
CLK3-208ENST00000562626 ESRGQ1W209 222 aa6.76□□□□□ -1.33
CLK3-208ENST00000562626 RNF212Q495C1 297 aa6.76□□□□□ -1.33
CLK3-208ENST00000562626 LGALS9CQ6DKI2 356 aa6.76□□□□□ -1.33
CLK3-208ENST00000562626 ZFP2Q6ZN57 461 aa6.76□□□□□ -1.33
CLK3-208ENST00000562626 C15orf54Q8N8G6 183 aa6.76□□□□□ -1.33
CLK3-208ENST00000562626 C15orf53Q8NAA6 179 aa6.76□□□□□ -1.33
CLK3-208ENST00000562626 NUP35Q8NFH5 326 aa6.76□□□□□ -1.33
CLK3-208ENST00000562626 TSKUQ8WUA8 353 aa6.76□□□□□ -1.33
CLK3-208ENST00000562626 LINC00588Q9Y4M8 146 aa6.76□□□□□ -1.33
CLK3-208ENST00000562626 FRAS1Q86XX4 4008 aa6.75□□□□□ -1.33
CLK3-208ENST00000562626 A0A1W2PPQ1 181 aa6.75□□□□□ -1.33
CLK3-208ENST00000562626 XKRY2A2RUG3 117 aa6.75□□□□□ -1.33
CLK3-208ENST00000562626 F8W036 122 aa6.75□□□□□ -1.33
CLK3-208ENST00000562626 CACNG7P62955 275 aa6.75□□□□□ -1.33
CLK3-208ENST00000562626 C10orf91Q5T1B1 145 aa6.75□□□□□ -1.33
CLK3-208ENST00000562626 TRBV6-4A0A1B0GX49 114 aa6.74□□□□□ -1.33
CLK3-208ENST00000562626 SMIM27A0A1W2PRY6 76 aa6.74□□□□□ -1.33
CLK3-208ENST00000562626 F2Z2F3 143 aa6.74□□□□□ -1.33
CLK3-208ENST00000562626 GAS8-AS1O95177 125 aa6.74□□□□□ -1.33
CLK3-208ENST00000562626 TWIST1Q15672 202 aa6.74□□□□□ -1.33
CLK3-208ENST00000562626 SLC7A5P1Q8MH63 180 aa6.74□□□□□ -1.33
CLK3-208ENST00000562626 AP1S3Q96PC3 154 aa6.74□□□□□ -1.33
CLK3-208ENST00000562626 GFRA4Q9GZZ7 299 aa6.74□□□□□ -1.33
CLK3-208ENST00000562626 ICOSQ9Y6W8 199 aa6.74□□□□□ -1.33
CLK3-208ENST00000562626 GAGE12JA6NER3 117 aa6.73□□□□□ -1.33
CLK3-208ENST00000562626 RHODO00212 210 aa6.73□□□□□ -1.33
CLK3-208ENST00000562626 MGPP08493 103 aa6.73□□□□□ -1.33
CLK3-208ENST00000562626 GAGE1Q13065 139 aa6.73□□□□□ -1.33
CLK3-208ENST00000562626 GAGE4Q13068 117 aa6.73□□□□□ -1.33
CLK3-208ENST00000562626 GAGE5Q13069 117 aa6.73□□□□□ -1.33
CLK3-208ENST00000562626 SLAQ13239 276 aa6.73□□□□□ -1.33
CLK3-208ENST00000562626 RHOHQ15669 191 aa6.73□□□□□ -1.33
CLK3-208ENST00000562626 ZNF56Q15929 161 aa6.73□□□□□ -1.33
CLK3-208ENST00000562626 GAGE13Q4V321 117 aa6.73□□□□□ -1.33
CLK3-208ENST00000562626 SUMO4Q6EEV6 95 aa6.73□□□□□ -1.33
CLK3-208ENST00000562626 WDR73Q6P4I2 378 aa6.73□□□□□ -1.33
CLK3-208ENST00000562626 LYPD5Q6UWN5 251 aa6.73□□□□□ -1.33
CLK3-208ENST00000562626 SEC11CQ9BY50 192 aa6.73□□□□□ -1.33
CLK3-208ENST00000562626 FAM231BA6NCW3 169 aa6.72□□□□□ -1.33
CLK3-208ENST00000562626 CIDEAO60543 219 aa6.72□□□□□ -1.33
CLK3-208ENST00000562626 SRIP30626 198 aa6.72□□□□□ -1.33
CLK3-208ENST00000562626 FAM3BP58499 235 aaPredicted RBP6.72□□□□□ -1.33
CLK3-208ENST00000562626 RAB4BP61018 213 aa6.72□□□□□ -1.33
CLK3-208ENST00000562626 PNRC1Q12796 327 aaPredicted RBP6.72□□□□□ -1.33
CLK3-208ENST00000562626 MRPL23Q16540 153 aaKnown RBP6.72□□□□□ -1.33
CLK3-208ENST00000562626 NEXN-AS1Q8NBZ9 246 aa6.72□□□□□ -1.33
CLK3-208ENST00000562626 ZNRF2Q8NHG8 242 aa6.72□□□□□ -1.33
CLK3-208ENST00000562626 CARHSP1Q9Y2V2 147 aaKnown RBP6.72□□□□□ -1.33
CLK3-208ENST00000562626 DNAH10Q8IVF4 4471 aa6.72□□□□□ -1.33
CLK3-208ENST00000562626 IGLV2-18A0A075B6J9 118 aa6.71□□□□□ -1.34
CLK3-208ENST00000562626 TRAV26-2A0A0B4J265 109 aa6.71□□□□□ -1.34
CLK3-208ENST00000562626 A0A1B0GUT8 65 aa6.71□□□□□ -1.34
CLK3-208ENST00000562626 F5H697 171 aa6.71□□□□□ -1.34
CLK3-208ENST00000562626 M0QY20 66 aa6.71□□□□□ -1.34
CLK3-208ENST00000562626 TRGC1P0CF51 173 aa6.71□□□□□ -1.34
CLK3-208ENST00000562626 MRPL54Q6P161 138 aaKnown RBP6.71□□□□□ -1.34
CLK3-208ENST00000562626 NEGR1Q7Z3B1 354 aa6.71□□□□□ -1.34
CLK3-208ENST00000562626 UBE2DNLQ8IWF7 75 aa6.71□□□□□ -1.34
CLK3-208ENST00000562626 RNF185Q96GF1 192 aa6.71□□□□□ -1.34
CLK3-208ENST00000562626 KRTAP1-5Q9BYS1 174 aa6.71□□□□□ -1.34
CLK3-208ENST00000562626 DPH3P1Q9H4G8 78 aa6.71□□□□□ -1.34
CLK3-208ENST00000562626 NAT8BQ9UHF3 227 aa6.71□□□□□ -1.34
CLK3-208ENST00000562626 DNAH2Q9P225 4427 aa6.7□□□□□ -1.34
CLK3-208ENST00000562626 A0A1B0GXF2 115 aa6.7□□□□□ -1.34
CLK3-208ENST00000562626 SMIM17P0DL12 118 aa6.7□□□□□ -1.34
CLK3-208ENST00000562626 WFDC10BQ8IUB3 73 aa6.7□□□□□ -1.34
CLK3-208ENST00000562626 Q8N3U1 123 aa6.7□□□□□ -1.34
CLK3-208ENST00000562626 GATD1Q8NB37 220 aa6.7□□□□□ -1.34
CLK3-208ENST00000562626 RPL39LQ96EH5 51 aaKnown RBP6.7□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 73.8 ms