RNA–Protein interactions for RNA: ENST00000562420.1

VPS35-203, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 740 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-203ENST00000562420 H3BP45 60 aa2.4□□□□□ -2.03
VPS35-203ENST00000562420 K7ERJ3 54 aa2.4□□□□□ -2.03
VPS35-203ENST00000562420 SH2D1AO60880 128 aa2.4□□□□□ -2.03
VPS35-203ENST00000562420 IGHV3-33P01772 117 aa2.4□□□□□ -2.03
VPS35-203ENST00000562420 FGF12P61328 243 aa2.4□□□□□ -2.03
VPS35-203ENST00000562420 UBE2BP63146 152 aa2.4□□□□□ -2.03
VPS35-203ENST00000562420 PRR3P79522 188 aaKnown RBP2.4□□□□□ -2.03
VPS35-203ENST00000562420 IGLV3-21P80748 117 aaPredicted RBP2.4□□□□□ -2.03
VPS35-203ENST00000562420 PDE6HQ13956 83 aa2.4□□□□□ -2.03
VPS35-203ENST00000562420 PLGLAQ15195 96 aa2.4□□□□□ -2.03
VPS35-203ENST00000562420 FBXL19-AS1Q494R0 122 aa2.4□□□□□ -2.03
VPS35-203ENST00000562420 GDF5OSQ5U4N7 250 aa2.4□□□□□ -2.03
VPS35-203ENST00000562420 LINC00173Q6ZV60 143 aa2.4□□□□□ -2.03
VPS35-203ENST00000562420 FP248Q71RG6 208 aaPredicted RBP2.4□□□□□ -2.03
VPS35-203ENST00000562420 MKXQ8IYA7 352 aa2.4□□□□□ -2.03
VPS35-203ENST00000562420 Q8N2B8 174 aa2.4□□□□□ -2.03
VPS35-203ENST00000562420 DCANP1Q8TF63 244 aa2.4□□□□□ -2.03
VPS35-203ENST00000562420 LINC00597Q9H2U6 94 aa2.4□□□□□ -2.03
VPS35-203ENST00000562420 ZNF355PQ9NSJ1 428 aa2.4□□□□□ -2.03
VPS35-203ENST00000562420 ANAPC11Q9NYG5 84 aa2.4□□□□□ -2.03
VPS35-203ENST00000562420 VWA8A3KMH1 1905 aa2.4□□□□□ -2.03
VPS35-203ENST00000562420 SCN10AQ9Y5Y9 1956 aa2.4□□□□□ -2.03
VPS35-203ENST00000562420 MDC1Q14676 2089 aaKnown RBP2.39□□□□□ -2.03
VPS35-203ENST00000562420 IGHV7-81A0A0B4J1V7 117 aa2.39□□□□□ -2.03
VPS35-203ENST00000562420 IGHV1-69DA0A0B4J2H0 117 aa2.39□□□□□ -2.03
VPS35-203ENST00000562420 A0A0J9YXY3 114 aa2.39□□□□□ -2.03
VPS35-203ENST00000562420 TEX49A0A1B0GTD5 131 aa2.39□□□□□ -2.03
VPS35-203ENST00000562420 LOC389332A0A1B0GUA5 103 aa2.39□□□□□ -2.03
VPS35-203ENST00000562420 SDHAF1A6NFY7 115 aa2.39□□□□□ -2.03
VPS35-203ENST00000562420 C12orf77C9JDV5 145 aa2.39□□□□□ -2.03
VPS35-203ENST00000562420 E7EQL1 145 aa2.39□□□□□ -2.03
VPS35-203ENST00000562420 INS-IGF2F8WCM5 200 aa2.39□□□□□ -2.03
VPS35-203ENST00000562420 H7BZZ5 65 aa2.39□□□□□ -2.03
VPS35-203ENST00000562420 TIMM17BO60830 172 aa2.39□□□□□ -2.03
VPS35-203ENST00000562420 LY6G6DO95868 133 aa2.39□□□□□ -2.03
VPS35-203ENST00000562420 IGLV3-1P01715 115 aa2.39□□□□□ -2.03
VPS35-203ENST00000562420 IGHV3-9P01782 118 aa2.39□□□□□ -2.03
VPS35-203ENST00000562420 RNASE2P10153 161 aaKnown RBP2.39□□□□□ -2.03
VPS35-203ENST00000562420 XCL1P47992 114 aa2.39□□□□□ -2.03
VPS35-203ENST00000562420 KIAA0087Q14695 138 aa2.39□□□□□ -2.03
VPS35-203ENST00000562420 RHOHQ15669 191 aa2.39□□□□□ -2.03
VPS35-203ENST00000562420 LCA10Q71F78 164 aa2.39□□□□□ -2.03
VPS35-203ENST00000562420 MDP1Q86V88 176 aa2.39□□□□□ -2.03
VPS35-203ENST00000562420 LYPD1Q8N2G4 141 aa2.39□□□□□ -2.03
VPS35-203ENST00000562420 Q8N7P7 452 aa2.39□□□□□ -2.03
VPS35-203ENST00000562420 CCL17Q92583 94 aa2.39□□□□□ -2.03
VPS35-203ENST00000562420 KLK6Q92876 244 aa2.39□□□□□ -2.03
VPS35-203ENST00000562420 PGLYRP4Q96LB8 373 aa2.39□□□□□ -2.03
VPS35-203ENST00000562420 SCGB3A1Q96QR1 104 aa2.39□□□□□ -2.03
VPS35-203ENST00000562420 CCL13Q99616 98 aa2.39□□□□□ -2.03
VPS35-203ENST00000562420 RBM12B-AS1Q9P1G2 102 aa2.39□□□□□ -2.03
VPS35-203ENST00000562420 DPM3Q9P2X0 92 aa2.39□□□□□ -2.03
VPS35-203ENST00000562420 SPRR3Q9UBC9 169 aa2.39□□□□□ -2.03
VPS35-203ENST00000562420 XCL2Q9UBD3 114 aa2.39□□□□□ -2.03
VPS35-203ENST00000562420 KLK5Q9Y337 293 aaPredicted RBP2.39□□□□□ -2.03
VPS35-203ENST00000562420 GTF3C1Q12789 2109 aa2.39□□□□□ -2.03
VPS35-203ENST00000562420 NLRC5Q86WI3 1866 aa2.39□□□□□ -2.03
VPS35-203ENST00000562420 NCOA6Q14686 2063 aaPredicted RBP2.38□□□□□ -2.03
VPS35-203ENST00000562420 A0A096LNJ9 63 aa2.38□□□□□ -2.03
VPS35-203ENST00000562420 IGKV2D-26A0A0A0MRZ7 120 aa2.38□□□□□ -2.03
VPS35-203ENST00000562420 IGLV3-32A0A0A0MS00 114 aa2.38□□□□□ -2.03
VPS35-203ENST00000562420 IGHV3-35A0A0C4DH35 117 aa2.38□□□□□ -2.03
VPS35-203ENST00000562420 M0R378 163 aa2.38□□□□□ -2.03
VPS35-203ENST00000562420 LST1O00453 97 aa2.38□□□□□ -2.03
VPS35-203ENST00000562420 CCL22O00626 93 aa2.38□□□□□ -2.03
VPS35-203ENST00000562420 SPINK4O60575 86 aa2.38□□□□□ -2.03
VPS35-203ENST00000562420 IGLV3-27P01718 113 aa2.38□□□□□ -2.03
VPS35-203ENST00000562420 IGHV3-30P01768 117 aa2.38□□□□□ -2.03
VPS35-203ENST00000562420 P0C879 139 aa2.38□□□□□ -2.03
VPS35-203ENST00000562420 IGHV3-30-5P0DP03 117 aa2.38□□□□□ -2.03
VPS35-203ENST00000562420 ZNF80P51504 273 aaPredicted RBP2.38□□□□□ -2.03
VPS35-203ENST00000562420 FXYD4P59646 89 aa2.38□□□□□ -2.03
VPS35-203ENST00000562420 KRTAP12-2P59991 146 aa2.38□□□□□ -2.03
VPS35-203ENST00000562420 SNRPD3P62318 126 aaKnown RBP2.38□□□□□ -2.03
VPS35-203ENST00000562420 RBM3P98179 157 aaKnown RBP2.38□□□□□ -2.03
VPS35-203ENST00000562420 CLLU1OSQ5K130 101 aa2.38□□□□□ -2.03
VPS35-203ENST00000562420 CHCHD2P9Q5T1J5 151 aaPredicted RBP2.38□□□□□ -2.03
VPS35-203ENST00000562420 LCE3AQ5TA76 89 aa2.38□□□□□ -2.03
VPS35-203ENST00000562420 CEMP1Q6PRD7 247 aaPredicted RBP2.38□□□□□ -2.03
VPS35-203ENST00000562420 LYPD5Q6UWN5 251 aa2.38□□□□□ -2.03
VPS35-203ENST00000562420 C2orf66Q6UXQ4 117 aa2.38□□□□□ -2.03
VPS35-203ENST00000562420 SCXQ7RTU7 201 aa2.38□□□□□ -2.03
VPS35-203ENST00000562420 WFDC11Q8NEX6 87 aa2.38□□□□□ -2.03
VPS35-203ENST00000562420 DEFB126Q9BYW3 111 aa2.38□□□□□ -2.03
VPS35-203ENST00000562420 CYP4F30PQ9H0H9 118 aa2.38□□□□□ -2.03
VPS35-203ENST00000562420 UBE2D4Q9Y2X8 147 aa2.38□□□□□ -2.03
VPS35-203ENST00000562420 EXPH5Q8NEV8 1989 aa2.38□□□□□ -2.03
VPS35-203ENST00000562420 COL4A6Q14031 1691 aa2.37□□□□□ -2.03
VPS35-203ENST00000562420 SCN3AQ9NY46 2000 aa2.37□□□□□ -2.03
VPS35-203ENST00000562420 PLXNA2O75051 1894 aa2.37□□□□□ -2.03
VPS35-203ENST00000562420 DOCK11Q5JSL3 2073 aa2.37□□□□□ -2.03
VPS35-203ENST00000562420 IGKV1D-8A0A087WSZ0 117 aa2.37□□□□□ -2.03
VPS35-203ENST00000562420 IGHV6-1A0A0B4J1U7 121 aa2.37□□□□□ -2.03
VPS35-203ENST00000562420 A0A0J9YY99 117 aa2.37□□□□□ -2.03
VPS35-203ENST00000562420 A0A1W2PQD3 144 aa2.37□□□□□ -2.03
VPS35-203ENST00000562420 TMEM223A0PJW6 202 aa2.37□□□□□ -2.03
VPS35-203ENST00000562420 IQCF6A8MYZ5 107 aa2.37□□□□□ -2.03
VPS35-203ENST00000562420 H3BQ85 93 aa2.37□□□□□ -2.03
VPS35-203ENST00000562420 PIRTP0C851 137 aa2.37□□□□□ -2.03
VPS35-203ENST00000562420 COX6B1P14854 86 aa2.37□□□□□ -2.03
Retrieved 100 of 20,778 RNA–protein pairs in 45.4 ms