RNA–Protein interactions for RNA: ENST00000561713.1

VPS35-202, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 589 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-202ENST00000561713 UBR4Q5T4S7 5183 aa12.61□□□□□ -0.39
VPS35-202ENST00000561713 M0R381 172 aa12.6□□□□□ -0.39
VPS35-202ENST00000561713 UBE2G1P62253 170 aa12.6□□□□□ -0.39
VPS35-202ENST00000561713 LAGE3Q14657 143 aa12.6□□□□□ -0.39
VPS35-202ENST00000561713 FAM162BQ5T6X4 162 aa12.6□□□□□ -0.39
VPS35-202ENST00000561713 CST9LP1Q5W188 147 aa12.6□□□□□ -0.39
VPS35-202ENST00000561713 OR11H4Q8NGC9 324 aa12.6□□□□□ -0.39
VPS35-202ENST00000561713 AKR1C3P42330 323 aa12.59□□□□□ -0.39
VPS35-202ENST00000561713 SYT8Q8NBV8 401 aa12.59□□□□□ -0.39
VPS35-202ENST00000561713 FMC1Q96HJ9 113 aa12.59□□□□□ -0.39
VPS35-202ENST00000561713 DNAJC30Q96LL9 226 aa12.59□□□□□ -0.39
VPS35-202ENST00000561713 LRP1Q07954 4544 aaKnown RBP12.58□□□□□ -0.39
VPS35-202ENST00000561713 PIK3CD-AS1Q5SR53 167 aa12.58□□□□□ -0.4
VPS35-202ENST00000561713 IGLV2-33A0A075B6J2 118 aaPredicted RBP12.57□□□□□ -0.4
VPS35-202ENST00000561713 RHODO00212 210 aa12.57□□□□□ -0.4
VPS35-202ENST00000561713 RPL19P84098 196 aaKnown RBP12.57□□□□□ -0.4
VPS35-202ENST00000561713 RGS21Q2M5E4 152 aa12.57□□□□□ -0.4
VPS35-202ENST00000561713 NKX6-2Q9C056 277 aaPredicted RBP12.57□□□□□ -0.4
VPS35-202ENST00000561713 PHLDA3Q9Y5J5 127 aa12.57□□□□□ -0.4
VPS35-202ENST00000561713 PAGE4O60829 102 aa12.56□□□□□ -0.4
VPS35-202ENST00000561713 LTAP01374 205 aa12.56□□□□□ -0.4
VPS35-202ENST00000561713 TPT1P13693 172 aaKnown RBP12.56□□□□□ -0.4
VPS35-202ENST00000561713 ZNF674Q2M3X9 581 aa12.56□□□□□ -0.4
VPS35-202ENST00000561713 LINC01559Q495D7 138 aa12.56□□□□□ -0.4
VPS35-202ENST00000561713 DNLZQ5SXM8 178 aa12.56□□□□□ -0.4
VPS35-202ENST00000561713 ZFP30Q9Y2G7 519 aa12.56□□□□□ -0.4
VPS35-202ENST00000561713 SCO2A0A1W2PP80 73 aa12.55□□□□□ -0.4
VPS35-202ENST00000561713 KRTAP29-1A8MX34 341 aaPredicted RBP12.55□□□□□ -0.4
VPS35-202ENST00000561713 COX8CQ7Z4L0 72 aa12.55□□□□□ -0.4
VPS35-202ENST00000561713 STOML3Q8TAV4 291 aa12.55□□□□□ -0.4
VPS35-202ENST00000561713 FAM213BQ8TBF2 198 aa12.55□□□□□ -0.4
VPS35-202ENST00000561713 TM2D2Q9BX73 214 aa12.55□□□□□ -0.4
VPS35-202ENST00000561713 BOLA1Q9Y3E2 137 aa12.55□□□□□ -0.4
VPS35-202ENST00000561713 LINC01620Q4KN68 170 aa12.54□□□□□ -0.4
VPS35-202ENST00000561713 SFRP2Q96HF1 295 aa12.54□□□□□ -0.4
VPS35-202ENST00000561713 PLA2G1BP04054 148 aaKnown RBP12.53□□□□□ -0.4
VPS35-202ENST00000561713 NIT1Q86X76 327 aa12.53□□□□□ -0.4
VPS35-202ENST00000561713 ZFP82Q8N141 532 aa12.53□□□□□ -0.4
VPS35-202ENST00000561713 BAALCQ8WXS3 180 aa12.53□□□□□ -0.4
VPS35-202ENST00000561713 A0A087WWC5 75 aa12.52□□□□□ -0.41
VPS35-202ENST00000561713 TRAV8-3A0A0A6YYJ7 113 aa12.52□□□□□ -0.41
VPS35-202ENST00000561713 MUC21A0A0G2JKD1 596 aa12.52□□□□□ -0.41
VPS35-202ENST00000561713 TRBV6-1A0A0K0K1D8 114 aa12.52□□□□□ -0.41
VPS35-202ENST00000561713 MUC21A0A140T8X8 626 aa12.52□□□□□ -0.41
VPS35-202ENST00000561713 C1QBP02746 253 aa12.52□□□□□ -0.41
VPS35-202ENST00000561713 LINC00528Q8N1L1 170 aa12.52□□□□□ -0.41
VPS35-202ENST00000561713 KCNRGQ8N5I3 272 aa12.52□□□□□ -0.41
VPS35-202ENST00000561713 OR10AG1Q8NH19 301 aa12.52□□□□□ -0.41
VPS35-202ENST00000561713 SFT2D1Q8WV19 159 aa12.52□□□□□ -0.41
VPS35-202ENST00000561713 KLK12Q9UKR0 248 aa12.52□□□□□ -0.41
VPS35-202ENST00000561713 FAT3Q8TDW7 4589 aa12.52□□□□□ -0.41
VPS35-202ENST00000561713 URGCP-MRPS24S4R325 110 aa12.51□□□□□ -0.41
VPS35-202ENST00000561713 IGKV2D-24A0A075B6R9 120 aa12.5□□□□□ -0.41
VPS35-202ENST00000561713 ZNF56Q15929 161 aa12.5□□□□□ -0.41
VPS35-202ENST00000561713 PRR27Q6MZM9 219 aa12.5□□□□□ -0.41
VPS35-202ENST00000561713 Q6ZSA8 131 aa12.5□□□□□ -0.41
VPS35-202ENST00000561713 UBE2WQ96B02 151 aa12.5□□□□□ -0.41
VPS35-202ENST00000561713 TCEAL7Q9BRU2 100 aa12.5□□□□□ -0.41
VPS35-202ENST00000561713 ZNF471Q9BX82 626 aaPredicted RBP12.5□□□□□ -0.41
VPS35-202ENST00000561713 UBE2D3P61077 147 aa12.49□□□□□ -0.41
VPS35-202ENST00000561713 UBE2D2P62837 147 aa12.49□□□□□ -0.41
VPS35-202ENST00000561713 ZNF345Q14585 488 aa12.49□□□□□ -0.41
VPS35-202ENST00000561713 TOR2AQ5JU69 321 aa12.49□□□□□ -0.41
VPS35-202ENST00000561713 DEFB104AQ8WTQ1 72 aa12.49□□□□□ -0.41
VPS35-202ENST00000561713 BCL2L11O43521 198 aa12.48□□□□□ -0.41
VPS35-202ENST00000561713 SSTP61278 116 aa12.48□□□□□ -0.41
VPS35-202ENST00000561713 RPL36AP83881 106 aaKnown RBP12.48□□□□□ -0.41
VPS35-202ENST00000561713 RPL36ALQ969Q0 106 aaKnown RBP12.48□□□□□ -0.41
VPS35-202ENST00000561713 PFDN1O60925 122 aa12.47□□□□□ -0.41
VPS35-202ENST00000561713 MBD3L1Q8WWY6 194 aa12.47□□□□□ -0.41
VPS35-202ENST00000561713 A0A087WX48 190 aa12.46□□□□□ -0.41
VPS35-202ENST00000561713 TRBV10-1A0A0K0K1A3 114 aa12.46□□□□□ -0.41
VPS35-202ENST00000561713 SEC11BP0C7V7 166 aa12.46□□□□□ -0.41
VPS35-202ENST00000561713 BAGE2Q86Y30 109 aa12.46□□□□□ -0.41
VPS35-202ENST00000561713 NEXN-AS1Q8NBZ9 246 aa12.46□□□□□ -0.41
VPS35-202ENST00000561713 TRBV7-3A0A075B6L6 115 aa12.45□□□□□ -0.42
VPS35-202ENST00000561713 KANTRA0A1W2PQU2 76 aa12.45□□□□□ -0.42
VPS35-202ENST00000561713 SERTAD4-AS1Q5TG53 156 aa12.45□□□□□ -0.42
VPS35-202ENST00000561713 RMI2Q96E14 147 aa12.45□□□□□ -0.42
VPS35-202ENST00000561713 DERL1Q9BUN8 251 aa12.45□□□□□ -0.42
VPS35-202ENST00000561713 UMAD1C9J7I0 102 aa12.44□□□□□ -0.42
VPS35-202ENST00000561713 MPV17L2Q567V2 206 aa12.44□□□□□ -0.42
VPS35-202ENST00000561713 MLST8Q9BVC4 326 aa12.44□□□□□ -0.42
VPS35-202ENST00000561713 RBFOX3A6NFN3 312 aa12.43□□□□□ -0.42
VPS35-202ENST00000561713 H2AFB1P0C5Y9 115 aa12.43□□□□□ -0.42
VPS35-202ENST00000561713 SCXQ7RTU7 201 aa12.43□□□□□ -0.42
VPS35-202ENST00000561713 C15orf54Q8N8G6 183 aa12.43□□□□□ -0.42
VPS35-202ENST00000561713 OR10G8Q8NGN5 311 aa12.43□□□□□ -0.42
VPS35-202ENST00000561713 TRBV6-8A0A0A6YYG3 113 aa12.42□□□□□ -0.42
VPS35-202ENST00000561713 TMEM262E9PQX1 116 aa12.42□□□□□ -0.42
VPS35-202ENST00000561713 SNAI2O43623 268 aa12.42□□□□□ -0.42
VPS35-202ENST00000561713 GZMBP10144 247 aa12.42□□□□□ -0.42
VPS35-202ENST00000561713 RPL35P42766 123 aaKnown RBP12.42□□□□□ -0.42
VPS35-202ENST00000561713 RAB4BP61018 213 aa12.42□□□□□ -0.42
VPS35-202ENST00000561713 CCL20P78556 96 aa12.42□□□□□ -0.42
VPS35-202ENST00000561713 SPANXN1Q5VSR9 72 aa12.42□□□□□ -0.42
VPS35-202ENST00000561713 KCNIP4Q6PIL6 250 aa12.42□□□□□ -0.42
VPS35-202ENST00000561713 COX11Q9Y6N1 276 aa12.42□□□□□ -0.42
VPS35-202ENST00000561713 A0A0D9SG52 128 aa12.41□□□□□ -0.42
VPS35-202ENST00000561713 HMSDA8MTL9 139 aa12.41□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms