RNA–Protein interactions for RNA: ENST00000560467.1

LDLR-212, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 928 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-212ENST00000560467 MUC21A0A140T8X8 626 aa8.46□□□□□ -1.06
LDLR-212ENST00000560467 APCSP02743 223 aa8.46□□□□□ -1.06
LDLR-212ENST00000560467 RNASE3P12724 160 aaKnown RBP8.46□□□□□ -1.06
LDLR-212ENST00000560467 FABP9Q0Z7S8 132 aa8.46□□□□□ -1.06
LDLR-212ENST00000560467 LGALS9BQ3B8N2 356 aa8.46□□□□□ -1.06
LDLR-212ENST00000560467 PHLDA1Q8WV24 401 aaPredicted RBP8.46□□□□□ -1.06
LDLR-212ENST00000560467 PTH2Q96A98 100 aa8.46□□□□□ -1.06
LDLR-212ENST00000560467 C9orf85Q96MD7 179 aa8.46□□□□□ -1.06
LDLR-212ENST00000560467 CNFNQ9BYD5 112 aa8.46□□□□□ -1.06
LDLR-212ENST00000560467 SCRT2Q9NQ03 307 aa8.46□□□□□ -1.06
LDLR-212ENST00000560467 LOC105371267A0A1B0GV96 52 aa8.45□□□□□ -1.06
LDLR-212ENST00000560467 A8MWV9 139 aa8.45□□□□□ -1.06
LDLR-212ENST00000560467 EMP1P54849 157 aa8.45□□□□□ -1.06
LDLR-212ENST00000560467 DAZ2Q13117 558 aaKnown RBP8.45□□□□□ -1.06
LDLR-212ENST00000560467 OR10AG1Q8NH19 301 aa8.45□□□□□ -1.06
LDLR-212ENST00000560467 RNASE8Q8TDE3 154 aaKnown RBP8.45□□□□□ -1.06
LDLR-212ENST00000560467 VPS13DQ5THJ4 4388 aa8.44□□□□□ -1.06
LDLR-212ENST00000560467 TRGV2A0A075B6R0 118 aa8.44□□□□□ -1.06
LDLR-212ENST00000560467 TRGV1A0A0A0MS02 117 aa8.44□□□□□ -1.06
LDLR-212ENST00000560467 TEX48A0A1B0GUV7 120 aa8.44□□□□□ -1.06
LDLR-212ENST00000560467 C1orf196B1AJZ1 125 aa8.44□□□□□ -1.06
LDLR-212ENST00000560467 AZU1P20160 251 aa8.44□□□□□ -1.06
LDLR-212ENST00000560467 LGALS9CQ6DKI2 356 aa8.44□□□□□ -1.06
LDLR-212ENST00000560467 YPEL4Q96NS1 127 aa8.44□□□□□ -1.06
LDLR-212ENST00000560467 TMEM191AQ9H0A3 160 aa8.44□□□□□ -1.06
LDLR-212ENST00000560467 NOP10Q9NPE3 64 aaKnown RBP8.44□□□□□ -1.06
LDLR-212ENST00000560467 RYR1P21817 5038 aa8.43□□□□□ -1.06
LDLR-212ENST00000560467 AGRNO00468 2067 aa8.43□□□□□ -1.06
LDLR-212ENST00000560467 A0A1B0GXF2 115 aa8.43□□□□□ -1.06
LDLR-212ENST00000560467 F5H697 171 aa8.43□□□□□ -1.06
LDLR-212ENST00000560467 CIDEAO60543 219 aa8.43□□□□□ -1.06
LDLR-212ENST00000560467 DMRTA1Q5VZB9 504 aa8.43□□□□□ -1.06
LDLR-212ENST00000560467 C11orf72Q8NBR9 251 aa8.43□□□□□ -1.06
LDLR-212ENST00000560467 MRPL18Q9H0U6 180 aaKnown RBP8.43□□□□□ -1.06
LDLR-212ENST00000560467 DPH3P1Q9H4G8 78 aa8.43□□□□□ -1.06
LDLR-212ENST00000560467 LYRM9A8MSI8 78 aa8.42□□□□□ -1.06
LDLR-212ENST00000560467 RHODO00212 210 aa8.42□□□□□ -1.06
LDLR-212ENST00000560467 NXPH4O95158 308 aa8.42□□□□□ -1.06
LDLR-212ENST00000560467 PPP1R17O96001 155 aa8.42□□□□□ -1.06
LDLR-212ENST00000560467 PPBPP02775 128 aa8.42□□□□□ -1.06
LDLR-212ENST00000560467 PRM2P04554 102 aa8.42□□□□□ -1.06
LDLR-212ENST00000560467 SPART-AS1P0CW21 52 aa8.42□□□□□ -1.06
LDLR-212ENST00000560467 NANOS2P60321 138 aaKnown RBP8.42□□□□□ -1.06
LDLR-212ENST00000560467 RAB5BP61020 215 aa8.42□□□□□ -1.06
LDLR-212ENST00000560467 TMEM136Q6ZRR5 245 aa8.42□□□□□ -1.06
LDLR-212ENST00000560467 ZNF575Q86XF7 245 aa8.42□□□□□ -1.06
LDLR-212ENST00000560467 C14orf178Q8N769 122 aaPredicted RBP8.42□□□□□ -1.06
LDLR-212ENST00000560467 OR4C5Q8NGB2 326 aa8.42□□□□□ -1.06
LDLR-212ENST00000560467 RASL10AQ92737 203 aa8.42□□□□□ -1.06
LDLR-212ENST00000560467 X6R8D5 127 aa8.42□□□□□ -1.06
LDLR-212ENST00000560467 DNAH6Q9C0G6 4158 aa8.41□□□□□ -1.06
LDLR-212ENST00000560467 H7C1H1 209 aa8.41□□□□□ -1.06
LDLR-212ENST00000560467 MGPP08493 103 aa8.41□□□□□ -1.06
LDLR-212ENST00000560467 CKS2P33552 79 aa8.41□□□□□ -1.06
LDLR-212ENST00000560467 FAM74A4Q5TZK3 123 aa8.41□□□□□ -1.06
LDLR-212ENST00000560467 FAM104BQ5XKR9 115 aa8.41□□□□□ -1.06
LDLR-212ENST00000560467 MRPL16Q9NX20 251 aaKnown RBP8.41□□□□□ -1.06
LDLR-212ENST00000560467 MSRB1Q9NZV6 116 aa8.41□□□□□ -1.06
LDLR-212ENST00000560467 IGHV4-28A0A0C4DH34 117 aa8.4□□□□□ -1.06
LDLR-212ENST00000560467 GAGE12BA1L429 117 aa8.4□□□□□ -1.06
LDLR-212ENST00000560467 GAGE7O76087 117 aa8.4□□□□□ -1.06
LDLR-212ENST00000560467 TRGC2P03986 189 aa8.4□□□□□ -1.06
LDLR-212ENST00000560467 GAGE12FP0CL80 117 aa8.4□□□□□ -1.06
LDLR-212ENST00000560467 GAGE12GP0CL81 117 aa8.4□□□□□ -1.06
LDLR-212ENST00000560467 GAGE12IP0CL82 117 aa8.4□□□□□ -1.06
LDLR-212ENST00000560467 EVI2AP22794 236 aa8.4□□□□□ -1.06
LDLR-212ENST00000560467 ORMDL3Q8N138 153 aa8.4□□□□□ -1.06
LDLR-212ENST00000560467 MRAP2Q96G30 205 aa8.4□□□□□ -1.06
LDLR-212ENST00000560467 DEFB130BP0DP73 79 aa8.39□□□□□ -1.07
LDLR-212ENST00000560467 DEFB130AP0DP74 79 aa8.39□□□□□ -1.07
LDLR-212ENST00000560467 ZNF56Q15929 161 aa8.39□□□□□ -1.07
LDLR-212ENST00000560467 ZFP2Q6ZN57 461 aa8.39□□□□□ -1.07
LDLR-212ENST00000560467 AMN1Q8IY45 258 aa8.39□□□□□ -1.07
LDLR-212ENST00000560467 GATD1Q8NB37 220 aa8.39□□□□□ -1.07
LDLR-212ENST00000560467 A0A087WWL8 130 aa8.38□□□□□ -1.07
LDLR-212ENST00000560467 TRAV4A0A0B4J268 109 aa8.38□□□□□ -1.07
LDLR-212ENST00000560467 DEFB4AO15263 64 aa8.38□□□□□ -1.07
LDLR-212ENST00000560467 S100A6P06703 90 aa8.38□□□□□ -1.07
LDLR-212ENST00000560467 DAD1P61803 113 aa8.38□□□□□ -1.07
LDLR-212ENST00000560467 FAM222AQ5U5X8 452 aa8.38□□□□□ -1.07
LDLR-212ENST00000560467 Q6ZTI0 123 aa8.38□□□□□ -1.07
LDLR-212ENST00000560467 C11orf45Q8TAV5 145 aa8.38□□□□□ -1.07
LDLR-212ENST00000560467 LAMTOR2Q9Y2Q5 125 aa8.38□□□□□ -1.07
LDLR-212ENST00000560467 TRGV4A0A0C4DH28 118 aa8.37□□□□□ -1.07
LDLR-212ENST00000560467 RS1O15537 224 aa8.37□□□□□ -1.07
LDLR-212ENST00000560467 RAB4AP20338 218 aa8.37□□□□□ -1.07
LDLR-212ENST00000560467 SLAQ13239 276 aa8.37□□□□□ -1.07
LDLR-212ENST00000560467 CFAP126Q5VTH2 177 aa8.37□□□□□ -1.07
LDLR-212ENST00000560467 Q8NAQ8 132 aa8.37□□□□□ -1.07
LDLR-212ENST00000560467 C11orf68Q9H3H3 251 aaKnown RBP8.37□□□□□ -1.07
LDLR-212ENST00000560467 FAT2Q9NYQ8 4349 aa8.37□□□□□ -1.07
LDLR-212ENST00000560467 DNAH2Q9P225 4427 aa8.36□□□□□ -1.07
LDLR-212ENST00000560467 MRPL51Q4U2R6 128 aaKnown RBP8.36□□□□□ -1.07
LDLR-212ENST00000560467 PRELID3AQ96N28 172 aa8.36□□□□□ -1.07
LDLR-212ENST00000560467 DKK2Q9UBU2 259 aa8.36□□□□□ -1.07
LDLR-212ENST00000560467 PKHD1P08F94 4074 aa8.35□□□□□ -1.07
LDLR-212ENST00000560467 DNAH11Q96DT5 4516 aa8.35□□□□□ -1.07
LDLR-212ENST00000560467 PLAC8L1A1L4L8 177 aa8.35□□□□□ -1.07
LDLR-212ENST00000560467 D6R8Y8 96 aa8.35□□□□□ -1.07
LDLR-212ENST00000560467 PHOX2AO14813 284 aa8.35□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 54.8 ms