RNA–Protein interactions for RNA: ENST00000560173.1

LDLR-211, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 389 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-211ENST00000560173 NHLRC2Q8NBF2 726 aa6.57□□□□□ -1.36
LDLR-211ENST00000560173 BORCS7Q96B45 105 aa6.57□□□□□ -1.36
LDLR-211ENST00000560173 KCNS1Q96KK3 526 aa6.57□□□□□ -1.36
LDLR-211ENST00000560173 SPXQ9BT56 116 aa6.57□□□□□ -1.36
LDLR-211ENST00000560173 MRPL16Q9NX20 251 aaKnown RBP6.57□□□□□ -1.36
LDLR-211ENST00000560173 TRAPPC1Q9Y5R8 145 aa6.57□□□□□ -1.36
LDLR-211ENST00000560173 FOXA3P55318 350 aaPredicted RBP6.56□□□□□ -1.36
LDLR-211ENST00000560173 ZFP82Q8N141 532 aa6.56□□□□□ -1.36
LDLR-211ENST00000560173 C15orf53Q8NAA6 179 aa6.56□□□□□ -1.36
LDLR-211ENST00000560173 OR2D3Q8NGH3 330 aa6.56□□□□□ -1.36
LDLR-211ENST00000560173 ZC2HC1AQ96GY0 325 aa6.56□□□□□ -1.36
LDLR-211ENST00000560173 TRAV26-1A0A087WT03 109 aa6.55□□□□□ -1.36
LDLR-211ENST00000560173 C5orf52A6NGY3 159 aa6.55□□□□□ -1.36
LDLR-211ENST00000560173 FABP5P3A8MUU1 101 aa6.55□□□□□ -1.36
LDLR-211ENST00000560173 HIGD1CA8MV81 97 aa6.55□□□□□ -1.36
LDLR-211ENST00000560173 TRGC1P0CF51 173 aa6.55□□□□□ -1.36
LDLR-211ENST00000560173 P0DMU3 169 aa6.55□□□□□ -1.36
LDLR-211ENST00000560173 FAM231AP0DMU4 169 aa6.55□□□□□ -1.36
LDLR-211ENST00000560173 FAM231CP0DMU5 169 aa6.55□□□□□ -1.36
LDLR-211ENST00000560173 CRIP1P50238 77 aa6.55□□□□□ -1.36
LDLR-211ENST00000560173 RASL10AQ92737 203 aa6.55□□□□□ -1.36
LDLR-211ENST00000560173 FRZBQ92765 325 aa6.55□□□□□ -1.36
LDLR-211ENST00000560173 DNAH10Q8IVF4 4471 aa6.55□□□□□ -1.36
LDLR-211ENST00000560173 IGKV3D-20A0A0C4DH25 116 aa6.54□□□□□ -1.36
LDLR-211ENST00000560173 M0R2P5 195 aa6.54□□□□□ -1.36
LDLR-211ENST00000560173 HIST1H2BKO60814 126 aa6.54□□□□□ -1.36
LDLR-211ENST00000560173 SH2D1AO60880 128 aa6.54□□□□□ -1.36
LDLR-211ENST00000560173 HIST1H2BJP06899 126 aa6.54□□□□□ -1.36
LDLR-211ENST00000560173 HIST1H2BOP23527 126 aa6.54□□□□□ -1.36
LDLR-211ENST00000560173 HIST1H2BBP33778 126 aa6.54□□□□□ -1.36
LDLR-211ENST00000560173 HIST1H2BDP58876 126 aa6.54□□□□□ -1.36
LDLR-211ENST00000560173 HIST1H2BCP62807 126 aa6.54□□□□□ -1.36
LDLR-211ENST00000560173 HBBP68871 147 aa6.54□□□□□ -1.36
LDLR-211ENST00000560173 FABP9Q0Z7S8 132 aa6.54□□□□□ -1.36
LDLR-211ENST00000560173 RIGQ13278 110 aa6.54□□□□□ -1.36
LDLR-211ENST00000560173 HIST2H2BEQ16778 126 aa6.54□□□□□ -1.36
LDLR-211ENST00000560173 HIST2H2BFQ5QNW6 126 aaPredicted RBP6.54□□□□□ -1.36
LDLR-211ENST00000560173 NUP35Q8NFH5 326 aa6.54□□□□□ -1.36
LDLR-211ENST00000560173 HIST1H2BHQ93079 126 aa6.54□□□□□ -1.36
LDLR-211ENST00000560173 C9orf85Q96MD7 179 aa6.54□□□□□ -1.36
LDLR-211ENST00000560173 HIST1H2BNQ99877 126 aa6.54□□□□□ -1.36
LDLR-211ENST00000560173 HIST1H2BMQ99879 126 aa6.54□□□□□ -1.36
LDLR-211ENST00000560173 HECTD4Q9Y4D8 3996 aa6.53□□□□□ -1.36
LDLR-211ENST00000560173 A0A0J9YY99 117 aa6.53□□□□□ -1.36
LDLR-211ENST00000560173 PHOX2AO14813 284 aa6.53□□□□□ -1.36
LDLR-211ENST00000560173 NUDT3O95989 172 aa6.53□□□□□ -1.36
LDLR-211ENST00000560173 IGHV3-53P01767 116 aa6.53□□□□□ -1.36
LDLR-211ENST00000560173 NDUFA6P56556 154 aa6.53□□□□□ -1.36
LDLR-211ENST00000560173 RAB4BP61018 213 aa6.53□□□□□ -1.36
LDLR-211ENST00000560173 SNRPEP62304 92 aaKnown RBP6.53□□□□□ -1.36
LDLR-211ENST00000560173 COA6Q5JTJ3 125 aaKnown RBP6.53□□□□□ -1.36
LDLR-211ENST00000560173 POM121L12Q8N7R1 296 aa6.53□□□□□ -1.36
LDLR-211ENST00000560173 VSIG2Q96IQ7 327 aa6.53□□□□□ -1.36
LDLR-211ENST00000560173 MRPL18Q9H0U6 180 aaKnown RBP6.53□□□□□ -1.36
LDLR-211ENST00000560173 TRAV4A0A0B4J268 109 aa6.52□□□□□ -1.37
LDLR-211ENST00000560173 A0A1B0GUT8 65 aa6.52□□□□□ -1.37
LDLR-211ENST00000560173 F2Z2F3 143 aa6.52□□□□□ -1.37
LDLR-211ENST00000560173 H3BNG1 76 aa6.52□□□□□ -1.37
LDLR-211ENST00000560173 APCSP02743 223 aa6.52□□□□□ -1.37
LDLR-211ENST00000560173 ORM1P02763 201 aa6.52□□□□□ -1.37
LDLR-211ENST00000560173 RNASE3P12724 160 aaKnown RBP6.52□□□□□ -1.37
LDLR-211ENST00000560173 S100A2P29034 98 aa6.52□□□□□ -1.37
LDLR-211ENST00000560173 FHL2Q14192 279 aa6.52□□□□□ -1.37
LDLR-211ENST00000560173 LINC01559Q495D7 138 aa6.52□□□□□ -1.37
LDLR-211ENST00000560173 PTH2Q96A98 100 aa6.52□□□□□ -1.37
LDLR-211ENST00000560173 ZNF479Q96JC4 524 aa6.52□□□□□ -1.37
LDLR-211ENST00000560173 A0A1B0GXF2 115 aa6.51□□□□□ -1.37
LDLR-211ENST00000560173 ASIPP42127 132 aa6.51□□□□□ -1.37
LDLR-211ENST00000560173 ZNF876PQ49A33 203 aa6.51□□□□□ -1.37
LDLR-211ENST00000560173 DNLZQ5SXM8 178 aa6.51□□□□□ -1.37
LDLR-211ENST00000560173 DMRTA1Q5VZB9 504 aa6.51□□□□□ -1.37
LDLR-211ENST00000560173 MRPL54Q6P161 138 aaKnown RBP6.51□□□□□ -1.37
LDLR-211ENST00000560173 TMEM136Q6ZRR5 245 aa6.51□□□□□ -1.37
LDLR-211ENST00000560173 ZNF575Q86XF7 245 aa6.51□□□□□ -1.37
LDLR-211ENST00000560173 UBE2DNLQ8IWF7 75 aa6.51□□□□□ -1.37
LDLR-211ENST00000560173 PRO0255Q9UI72 69 aa6.51□□□□□ -1.37
LDLR-211ENST00000560173 DNAH2Q9P225 4427 aa6.5□□□□□ -1.37
LDLR-211ENST00000560173 NACAE9PAV3 2078 aa6.5□□□□□ -1.37
LDLR-211ENST00000560173 TMSB15BA0A087X1C1 80 aa6.5□□□□□ -1.37
LDLR-211ENST00000560173 TRGV4A0A0C4DH28 118 aa6.5□□□□□ -1.37
LDLR-211ENST00000560173 GRIFINA4D1Z8 144 aa6.5□□□□□ -1.37
LDLR-211ENST00000560173 H3BVH4 76 aa6.5□□□□□ -1.37
LDLR-211ENST00000560173 RS1O15537 224 aa6.5□□□□□ -1.37
LDLR-211ENST00000560173 PAX4O43316 350 aa6.5□□□□□ -1.37
LDLR-211ENST00000560173 S100A4P26447 101 aaKnown RBP6.5□□□□□ -1.37
LDLR-211ENST00000560173 AKR1D1P51857 326 aa6.5□□□□□ -1.37
LDLR-211ENST00000560173 CRYBA4P53673 196 aa6.5□□□□□ -1.37
LDLR-211ENST00000560173 Q0VG73 95 aa6.5□□□□□ -1.37
LDLR-211ENST00000560173 SLAQ13239 276 aa6.5□□□□□ -1.37
LDLR-211ENST00000560173 OR10J3Q5JRS4 329 aa6.5□□□□□ -1.37
LDLR-211ENST00000560173 FER1L6-AS1Q8NA97 138 aa6.5□□□□□ -1.37
LDLR-211ENST00000560173 OR4C5Q8NGB2 326 aa6.5□□□□□ -1.37
LDLR-211ENST00000560173 GTSF1Q8WW33 167 aa6.5□□□□□ -1.37
LDLR-211ENST00000560173 PGLYRP4Q96LB8 373 aa6.5□□□□□ -1.37
LDLR-211ENST00000560173 HHLA3Q9XRX5 114 aa6.5□□□□□ -1.37
LDLR-211ENST00000560173 A0A096LPF7 62 aa6.49□□□□□ -1.37
LDLR-211ENST00000560173 CTRLP40313 264 aa6.49□□□□□ -1.37
LDLR-211ENST00000560173 CCL18P55774 89 aa6.49□□□□□ -1.37
LDLR-211ENST00000560173 PIK3CD-AS1Q5SR53 167 aa6.49□□□□□ -1.37
LDLR-211ENST00000560173 CFAP126Q5VTH2 177 aa6.49□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 70.4 ms