RNA–Protein interactions for RNA: ENST00000558285.5

USP3-208, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best) BASIC

Gene USP3, Length 1,742 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-208ENST00000558285 ZNF331Q9NQX6 463 aaPredicted RBP6.3□□□□□ -1.4
USP3-208ENST00000558285 A0A1W2PPV4 95 aa6.29□□□□□ -1.4
USP3-208ENST00000558285 F2Z2F3 143 aa6.29□□□□□ -1.4
USP3-208ENST00000558285 HMGB3O15347 200 aaKnown RBP6.29□□□□□ -1.4
USP3-208ENST00000558285 CXorf1O96002 111 aa6.29□□□□□ -1.4
USP3-208ENST00000558285 APCSP02743 223 aa6.29□□□□□ -1.4
USP3-208ENST00000558285 PATE2Q6UY27 113 aa6.29□□□□□ -1.4
USP3-208ENST00000558285 Q8NAQ8 132 aa6.29□□□□□ -1.4
USP3-208ENST00000558285 CSNK1G2-AS1Q8NCQ2 148 aa6.29□□□□□ -1.4
USP3-208ENST00000558285 SCRT2Q9NQ03 307 aa6.29□□□□□ -1.4
USP3-208ENST00000558285 V9GYV3 84 aa6.29□□□□□ -1.4
USP3-208ENST00000558285 M0R2Z0 102 aa6.28□□□□□ -1.4
USP3-208ENST00000558285 MALP21145 153 aa6.28□□□□□ -1.4
USP3-208ENST00000558285 SRIP30626 198 aa6.28□□□□□ -1.4
USP3-208ENST00000558285 RNF182Q8N6D2 247 aa6.28□□□□□ -1.4
USP3-208ENST00000558285 OCC1Q8TAD7 63 aa6.28□□□□□ -1.4
USP3-208ENST00000558285 CHCHD1Q96BP2 118 aaKnown RBP6.28□□□□□ -1.4
USP3-208ENST00000558285 ODF3Q96PU9 254 aa6.28□□□□□ -1.4
USP3-208ENST00000558285 SPANXA1Q9NS26 97 aa6.28□□□□□ -1.4
USP3-208ENST00000558285 DNAH9Q9NYC9 4486 aa6.28□□□□□ -1.4
USP3-208ENST00000558285 SIVA1O15304 175 aa6.28□□□□□ -1.4
USP3-208ENST00000558285 GIG44P09565 113 aaPredicted RBP6.28□□□□□ -1.4
USP3-208ENST00000558285 HLA-DMBP28068 263 aa6.28□□□□□ -1.4
USP3-208ENST00000558285 GNG4P50150 75 aa6.28□□□□□ -1.4
USP3-208ENST00000558285 GDF5OSQ5U4N7 250 aa6.28□□□□□ -1.4
USP3-208ENST00000558285 ZNF493Q6ZR52 646 aa6.28□□□□□ -1.4
USP3-208ENST00000558285 LYPD1Q8N2G4 141 aa6.28□□□□□ -1.4
USP3-208ENST00000558285 LINC01587Q99440 93 aa6.28□□□□□ -1.4
USP3-208ENST00000558285 PAXXQ9BUH6 204 aa6.28□□□□□ -1.4
USP3-208ENST00000558285 DERL1Q9BUN8 251 aa6.28□□□□□ -1.4
USP3-208ENST00000558285 TRBV20OR9-2A0A075B6H5 130 aa6.27□□□□□ -1.41
USP3-208ENST00000558285 TRBV19A0A075B6N1 114 aa6.27□□□□□ -1.41
USP3-208ENST00000558285 TRAV8-2A0A0B4J237 113 aa6.27□□□□□ -1.41
USP3-208ENST00000558285 SMIM27A0A1W2PRY6 76 aa6.27□□□□□ -1.41
USP3-208ENST00000558285 FAM231BA6NCW3 169 aa6.27□□□□□ -1.41
USP3-208ENST00000558285 A8MTW9 85 aa6.27□□□□□ -1.41
USP3-208ENST00000558285 F6UB75 175 aa6.27□□□□□ -1.41
USP3-208ENST00000558285 H3BS24 57 aa6.27□□□□□ -1.41
USP3-208ENST00000558285 STAG3L2P0CL84 134 aa6.27□□□□□ -1.41
USP3-208ENST00000558285 COX8AP10176 69 aa6.27□□□□□ -1.41
USP3-208ENST00000558285 CRYBA4P53673 196 aa6.27□□□□□ -1.41
USP3-208ENST00000558285 EMP1P54849 157 aa6.27□□□□□ -1.41
USP3-208ENST00000558285 FXYD7P58549 80 aa6.27□□□□□ -1.41
USP3-208ENST00000558285 NANOS2P60321 138 aaKnown RBP6.27□□□□□ -1.41
USP3-208ENST00000558285 SPINK13Q1W4C9 94 aa6.27□□□□□ -1.41
USP3-208ENST00000558285 TMEM97Q5BJF2 176 aa6.27□□□□□ -1.41
USP3-208ENST00000558285 TMEM78Q5T7P6 136 aa6.27□□□□□ -1.41
USP3-208ENST00000558285 ATP5L2Q7Z4Y8 100 aa6.27□□□□□ -1.41
USP3-208ENST00000558285 C16orf74Q96GX8 76 aa6.27□□□□□ -1.41
USP3-208ENST00000558285 ZNF479Q96JC4 524 aa6.27□□□□□ -1.41
USP3-208ENST00000558285 C20orf173Q96LM9 149 aa6.27□□□□□ -1.41
USP3-208ENST00000558285 LINC00477Q96M19 166 aa6.27□□□□□ -1.41
USP3-208ENST00000558285 COL7A1Q02388 2944 aa6.26□□□□□ -1.41
USP3-208ENST00000558285 GAGE12HA6NDE8 117 aa6.26□□□□□ -1.41
USP3-208ENST00000558285 LYRM9A8MSI8 78 aa6.26□□□□□ -1.41
USP3-208ENST00000558285 MRPS12O15235 138 aaKnown RBP6.26□□□□□ -1.41
USP3-208ENST00000558285 DEFB4AO15263 64 aa6.26□□□□□ -1.41
USP3-208ENST00000558285 TSPAN13O95857 204 aa6.26□□□□□ -1.41
USP3-208ENST00000558285 NTF3P20783 257 aa6.26□□□□□ -1.41
USP3-208ENST00000558285 ATP5G3P48201 142 aa6.26□□□□□ -1.41
USP3-208ENST00000558285 UBE2L3P68036 154 aaKnown RBP6.26□□□□□ -1.41
USP3-208ENST00000558285 PQLC2Q6ZP29 291 aa6.26□□□□□ -1.41
USP3-208ENST00000558285 OR10AG1Q8NH19 301 aa6.26□□□□□ -1.41
USP3-208ENST00000558285 BLNKQ8WV28 456 aa6.26□□□□□ -1.41
USP3-208ENST00000558285 TRAV26-1A0A087WT03 109 aa6.25□□□□□ -1.41
USP3-208ENST00000558285 DEFB131BA0A096LNP1 70 aa6.25□□□□□ -1.41
USP3-208ENST00000558285 SYS1-DBNDD2H3BUS1 97 aa6.25□□□□□ -1.41
USP3-208ENST00000558285 K7EQM0 130 aa6.25□□□□□ -1.41
USP3-208ENST00000558285 LY6G6CO95867 125 aa6.25□□□□□ -1.41
USP3-208ENST00000558285 SLC25A5P05141 298 aaKnown RBP6.25□□□□□ -1.41
USP3-208ENST00000558285 RBMY1A1P0DJD3 496 aaKnown RBP6.25□□□□□ -1.41
USP3-208ENST00000558285 RBMY1CP0DJD4 496 aa6.25□□□□□ -1.41
USP3-208ENST00000558285 DAD1P61803 113 aa6.25□□□□□ -1.41
USP3-208ENST00000558285 RBMY1FQ15415 496 aaKnown RBP6.25□□□□□ -1.41
USP3-208ENST00000558285 IGFL4Q6B9Z1 124 aa6.25□□□□□ -1.41
USP3-208ENST00000558285 ATOH7Q8N100 152 aa6.25□□□□□ -1.41
USP3-208ENST00000558285 MRPL16Q9NX20 251 aaKnown RBP6.25□□□□□ -1.41
USP3-208ENST00000558285 TRAV5A0A0B4J249 113 aa6.25□□□□□ -1.41
USP3-208ENST00000558285 TRBV7-9A0A0J9YWB2 115 aa6.25□□□□□ -1.41
USP3-208ENST00000558285 A0A1W2PPM0 123 aa6.25□□□□□ -1.41
USP3-208ENST00000558285 IGLL5B9A064 214 aa6.25□□□□□ -1.41
USP3-208ENST00000558285 K7EN84 100 aa6.25□□□□□ -1.41
USP3-208ENST00000558285 FABP2P12104 132 aa6.25□□□□□ -1.41
USP3-208ENST00000558285 LGALS9CQ6DKI2 356 aa6.25□□□□□ -1.41
USP3-208ENST00000558285 AMTNQ6UX39 209 aa6.25□□□□□ -1.41
USP3-208ENST00000558285 SPATA12Q7Z6I5 190 aa6.25□□□□□ -1.41
USP3-208ENST00000558285 HSPB8Q9UJY1 196 aa6.25□□□□□ -1.41
USP3-208ENST00000558285 SCO2A0A1W2PP80 73 aa6.24□□□□□ -1.41
USP3-208ENST00000558285 NPIPB6E9PJ23 425 aa6.24□□□□□ -1.41
USP3-208ENST00000558285 F8W1H4 67 aa6.24□□□□□ -1.41
USP3-208ENST00000558285 SMAGPQ0VAQ4 97 aa6.24□□□□□ -1.41
USP3-208ENST00000558285 FAM231DQ6ZW35 169 aa6.24□□□□□ -1.41
USP3-208ENST00000558285 FAM19A2Q8N3H0 131 aa6.24□□□□□ -1.41
USP3-208ENST00000558285 TMEM263Q8WUH6 116 aaKnown RBP6.24□□□□□ -1.41
USP3-208ENST00000558285 LINC00476Q8WZB0 136 aa6.24□□□□□ -1.41
USP3-208ENST00000558285 SLC25A2Q9BXI2 301 aa6.24□□□□□ -1.41
USP3-208ENST00000558285 MAP1LC3CQ9BXW4 147 aa6.24□□□□□ -1.41
USP3-208ENST00000558285 YTHDF2Q9Y5A9 579 aaKnown RBP6.24□□□□□ -1.41
USP3-208ENST00000558285 SPCS1Q9Y6A9 102 aa6.24□□□□□ -1.41
USP3-208ENST00000558285 NBEAL2Q6ZNJ1 2754 aa6.23□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 108 ms