RNA–Protein interactions for RNA: ENST00000557433.5

SHMT2-231, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 1,904 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-231ENST00000557433 KALRNO60229 2985 aa12.16□□□□□ -0.46
SHMT2-231ENST00000557433 IGLV1-40P01703 118 aa12.16□□□□□ -0.46
SHMT2-231ENST00000557433 PF4V1P10720 104 aa12.16□□□□□ -0.46
SHMT2-231ENST00000557433 ZNF418Q8TF45 676 aaPredicted RBP12.16□□□□□ -0.46
SHMT2-231ENST00000557433 AMELXQ99217 191 aa12.16□□□□□ -0.46
SHMT2-231ENST00000557433 A0A0J9YX75 114 aa12.15□□□□□ -0.46
SHMT2-231ENST00000557433 TMEM262E9PQX1 116 aa12.15□□□□□ -0.46
SHMT2-231ENST00000557433 TCL1BO95988 128 aa12.15□□□□□ -0.46
SHMT2-231ENST00000557433 DEFB1P60022 68 aa12.15□□□□□ -0.46
SHMT2-231ENST00000557433 TRPT1Q86TN4 253 aaKnown RBP12.15□□□□□ -0.46
SHMT2-231ENST00000557433 DMXL2Q8TDJ6 3036 aa12.15□□□□□ -0.46
SHMT2-231ENST00000557433 A0A0B4J2C4 111 aa12.15□□□□□ -0.46
SHMT2-231ENST00000557433 RPL39P62891 51 aaKnown RBP12.15□□□□□ -0.46
SHMT2-231ENST00000557433 ZNRF2Q8NHG8 242 aa12.15□□□□□ -0.46
SHMT2-231ENST00000557433 GVINP1Q7Z2Y8 2422 aa12.15□□□□□ -0.46
SHMT2-231ENST00000557433 IGHV3-16A0A0C4DH30 117 aa12.14□□□□□ -0.47
SHMT2-231ENST00000557433 IGHV3-11P01762 117 aa12.14□□□□□ -0.47
SHMT2-231ENST00000557433 TSPEAR-AS2P59090 65 aa12.14□□□□□ -0.47
SHMT2-231ENST00000557433 CLEC2AQ6UVW9 174 aa12.14□□□□□ -0.47
SHMT2-231ENST00000557433 DCANP1Q8TF63 244 aa12.14□□□□□ -0.47
SHMT2-231ENST00000557433 MDFICQ9P1T7 246 aa12.14□□□□□ -0.47
SHMT2-231ENST00000557433 ZFHX2Q9C0A1 2572 aaPredicted RBP12.14□□□□□ -0.47
SHMT2-231ENST00000557433 PIEZO1Q92508 2521 aa12.14□□□□□ -0.47
SHMT2-231ENST00000557433 TLN1Q9Y490 2541 aaKnown RBP12.14□□□□□ -0.47
SHMT2-231ENST00000557433 TMEM223A0PJW6 202 aa12.13□□□□□ -0.47
SHMT2-231ENST00000557433 RIF1Q5UIP0 2472 aaKnown RBP12.13□□□□□ -0.47
SHMT2-231ENST00000557433 PTPRQQ9UMZ3 2332 aa12.13□□□□□ -0.47
SHMT2-231ENST00000557433 A0A087WWL8 130 aa12.13□□□□□ -0.47
SHMT2-231ENST00000557433 TRAV16A0A0A6YYK6 109 aaPredicted RBP12.13□□□□□ -0.47
SHMT2-231ENST00000557433 M0QY20 66 aa12.13□□□□□ -0.47
SHMT2-231ENST00000557433 SPINK8P0C7L1 97 aa12.13□□□□□ -0.47
SHMT2-231ENST00000557433 SCGB1C2P0DMR2 95 aa12.13□□□□□ -0.47
SHMT2-231ENST00000557433 P0DMU3 169 aa12.13□□□□□ -0.47
SHMT2-231ENST00000557433 FAM231AP0DMU4 169 aa12.13□□□□□ -0.47
SHMT2-231ENST00000557433 FAM231CP0DMU5 169 aa12.13□□□□□ -0.47
SHMT2-231ENST00000557433 Q6ZS46 218 aa12.13□□□□□ -0.47
SHMT2-231ENST00000557433 DMXL1Q9Y485 3027 aa12.13□□□□□ -0.47
SHMT2-231ENST00000557433 ZNF688P0C7X2 276 aa12.12□□□□□ -0.47
SHMT2-231ENST00000557433 Q6ZUT4 128 aa12.12□□□□□ -0.47
SHMT2-231ENST00000557433 EMP1P54849 157 aa12.11□□□□□ -0.47
SHMT2-231ENST00000557433 CFHR3Q02985 330 aa12.11□□□□□ -0.47
SHMT2-231ENST00000557433 CARD19Q96LW7 228 aa12.11□□□□□ -0.47
SHMT2-231ENST00000557433 PIMREGQ9BSJ6 248 aa12.11□□□□□ -0.47
SHMT2-231ENST00000557433 JPT2Q9H910 190 aa12.11□□□□□ -0.47
SHMT2-231ENST00000557433 MUC4Q99102 2169 aa12.11□□□□□ -0.47
SHMT2-231ENST00000557433 IGKV3-7A0A075B6H7 116 aa12.11□□□□□ -0.47
SHMT2-231ENST00000557433 TRAV12-3A0A0B4J271 114 aa12.11□□□□□ -0.47
SHMT2-231ENST00000557433 BRD3OSQ6XYD6 125 aa12.11□□□□□ -0.47
SHMT2-231ENST00000557433 LINC01600Q96MT4 127 aa12.11□□□□□ -0.47
SHMT2-231ENST00000557433 EDA2RQ9HAV5 297 aa12.11□□□□□ -0.47
SHMT2-231ENST00000557433 ZNF256Q9Y2P7 627 aaPredicted RBP12.11□□□□□ -0.47
SHMT2-231ENST00000557433 IGHV3OR16-10A0A075B7F0 116 aa12.1□□□□□ -0.47
SHMT2-231ENST00000557433 H3BUX3 64 aa12.1□□□□□ -0.47
SHMT2-231ENST00000557433 I3L3M4 83 aa12.1□□□□□ -0.47
SHMT2-231ENST00000557433 SNRPD3P62318 126 aaKnown RBP12.1□□□□□ -0.47
SHMT2-231ENST00000557433 ZNF56Q15929 161 aa12.1□□□□□ -0.47
SHMT2-231ENST00000557433 RNF152Q8N8N0 203 aa12.1□□□□□ -0.47
SHMT2-231ENST00000557433 C20orf203Q8NBC4 194 aa12.1□□□□□ -0.47
SHMT2-231ENST00000557433 TMEM89A2RUT3 159 aa12.09□□□□□ -0.47
SHMT2-231ENST00000557433 IGHV3-33P01772 117 aa12.09□□□□□ -0.47
SHMT2-231ENST00000557433 IGHV4-39P01824 125 aa12.09□□□□□ -0.47
SHMT2-231ENST00000557433 ERG28Q9UKR5 140 aa12.09□□□□□ -0.47
SHMT2-231ENST00000557433 RHODO00212 210 aa12.09□□□□□ -0.47
SHMT2-231ENST00000557433 LY6EQ16553 131 aa12.09□□□□□ -0.47
SHMT2-231ENST00000557433 TMEM263Q8WUH6 116 aaKnown RBP12.09□□□□□ -0.47
SHMT2-231ENST00000557433 IGHV1OR15-1A0A075B7D0 117 aa12.08□□□□□ -0.48
SHMT2-231ENST00000557433 A4D1N5 150 aa12.08□□□□□ -0.48
SHMT2-231ENST00000557433 ZNF22P17026 224 aaPredicted RBP12.08□□□□□ -0.48
SHMT2-231ENST00000557433 FAM74A4Q5TZK3 123 aa12.08□□□□□ -0.48
SHMT2-231ENST00000557433 SFTA2Q6UW10 78 aa12.08□□□□□ -0.48
SHMT2-231ENST00000557433 GEMIN7Q9H840 131 aaKnown RBP12.08□□□□□ -0.48
SHMT2-231ENST00000557433 PYGO1Q9Y3Y4 419 aa12.08□□□□□ -0.48
SHMT2-231ENST00000557433 TRGV11A0A075B6L2 103 aa12.07□□□□□ -0.48
SHMT2-231ENST00000557433 ANKRD29Q8N6D5 301 aa12.07□□□□□ -0.48
SHMT2-231ENST00000557433 PTH2Q96A98 100 aa12.07□□□□□ -0.48
SHMT2-231ENST00000557433 PTPRZ1P23471 2315 aaPredicted RBP12.07□□□□□ -0.48
SHMT2-231ENST00000557433 M0R2P5 195 aa12.07□□□□□ -0.48
SHMT2-231ENST00000557433 SLC25A20O43772 301 aa12.07□□□□□ -0.48
SHMT2-231ENST00000557433 ATMQ13315 3056 aa12.06□□□□□ -0.48
SHMT2-231ENST00000557433 MT-ATP8P03928 68 aa12.06□□□□□ -0.48
SHMT2-231ENST00000557433 XGP55808 180 aa12.06□□□□□ -0.48
SHMT2-231ENST00000557433 ATXN8Q156A1 80 aa12.06□□□□□ -0.48
SHMT2-231ENST00000557433 IGHV4-38-2P0DP08 117 aa12.05□□□□□ -0.48
SHMT2-231ENST00000557433 SRD5A1P18405 259 aa12.05□□□□□ -0.48
SHMT2-231ENST00000557433 BLCAPP62952 87 aa12.05□□□□□ -0.48
SHMT2-231ENST00000557433 FHL3Q13643 280 aa12.05□□□□□ -0.48
SHMT2-231ENST00000557433 Q8N1Y9 231 aa12.05□□□□□ -0.48
SHMT2-231ENST00000557433 IGLV4-3A0A075B6K6 122 aa12.05□□□□□ -0.48
SHMT2-231ENST00000557433 K7EQG2 157 aa12.05□□□□□ -0.48
SHMT2-231ENST00000557433 C10orf105Q8TEF2 133 aa12.05□□□□□ -0.48
SHMT2-231ENST00000557433 TACC2O95359 2948 aa12.05□□□□□ -0.48
SHMT2-231ENST00000557433 IGHV4-61A0A0C4DH41 118 aa12.04□□□□□ -0.48
SHMT2-231ENST00000557433 PSMB8P28062 276 aa12.04□□□□□ -0.48
SHMT2-231ENST00000557433 TRAV2A0A0B4J234 112 aa12.03□□□□□ -0.48
SHMT2-231ENST00000557433 TRBV30A0A0K0K1B3 111 aa12.03□□□□□ -0.48
SHMT2-231ENST00000557433 MUSTN1Q8IVN3 82 aa12.03□□□□□ -0.48
SHMT2-231ENST00000557433 LAMA5O15230 3695 aa12.03□□□□□ -0.48
SHMT2-231ENST00000557433 CACNA1BQ00975 2339 aa12.03□□□□□ -0.48
SHMT2-231ENST00000557433 C9JAW5 83 aa12.03□□□□□ -0.48
SHMT2-231ENST00000557433 RNF183Q96D59 192 aa12.03□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 78.1 ms