RNA–Protein interactions for RNA: ENST00000557005.1

SYNE2-223, Transcript of spectrin repeat containing nuclear envelope protein 2, human

TSL 2

Gene SYNE2, Length 5,804 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SYNE2-223	ENST00000557005		K7EQD1	137 aa		3.77	□□□□□ -1.81
SYNE2-223	ENST00000557005	CRLF1	O75462	422 aa		3.77	□□□□□ -1.81
SYNE2-223	ENST00000557005	INAFM2	P0DMQ5	153 aa		3.77	□□□□□ -1.81
SYNE2-223	ENST00000557005	PIP4P1	Q86T03	277 aa		3.77	□□□□□ -1.81
SYNE2-223	ENST00000557005	LINC01356	Q8N9X3	169 aa		3.77	□□□□□ -1.81
SYNE2-223	ENST00000557005	RBMY1F	Q15415	496 aa	Known RBP	3.77	□□□□□ -1.81
SYNE2-223	ENST00000557005	SS18	Q15532	418 aa		3.77	□□□□□ -1.81
SYNE2-223	ENST00000557005	NOP10	Q9NPE3	64 aa	Known RBP	3.77	□□□□□ -1.81
SYNE2-223	ENST00000557005		A0A096LNJ9	63 aa		3.77	□□□□□ -1.81
SYNE2-223	ENST00000557005	MIA	Q16674	131 aa		3.77	□□□□□ -1.81
SYNE2-223	ENST00000557005	TMEM61	Q8N0U2	210 aa		3.77	□□□□□ -1.81
SYNE2-223	ENST00000557005	MED14OS	P0DP75	135 aa		3.77	□□□□□ -1.81
SYNE2-223	ENST00000557005	HIST2H2BD	Q6DRA6	164 aa		3.77	□□□□□ -1.81
SYNE2-223	ENST00000557005	TIMM17A	Q99595	171 aa		3.77	□□□□□ -1.81
SYNE2-223	ENST00000557005	TMEM243	Q9BU79	118 aa		3.77	□□□□□ -1.81
SYNE2-223	ENST00000557005		A0A0J9YY99	117 aa		3.76	□□□□□ -1.81
SYNE2-223	ENST00000557005	MSMB	P08118	114 aa		3.76	□□□□□ -1.81
SYNE2-223	ENST00000557005	DEFB130B	P0DP73	79 aa		3.76	□□□□□ -1.81
SYNE2-223	ENST00000557005	DEFB130A	P0DP74	79 aa		3.76	□□□□□ -1.81
SYNE2-223	ENST00000557005	PROK1	P58294	105 aa		3.76	□□□□□ -1.81
SYNE2-223	ENST00000557005	SIRPD	Q9H106	197 aa		3.76	□□□□□ -1.81
SYNE2-223	ENST00000557005	IGHV4OR15-8	A0A075B7B6	117 aa		3.76	□□□□□ -1.81
SYNE2-223	ENST00000557005		A0A087WW49	117 aa		3.76	□□□□□ -1.81
SYNE2-223	ENST00000557005	IGHV1-58	A0A0C4DH39	117 aa		3.76	□□□□□ -1.81
SYNE2-223	ENST00000557005	ACYP1	P07311	99 aa		3.76	□□□□□ -1.81
SYNE2-223	ENST00000557005	IGHV3-30-3	P0DP02	117 aa		3.76	□□□□□ -1.81
SYNE2-223	ENST00000557005	IGHV4-59	P01825	116 aa		3.76	□□□□□ -1.81
SYNE2-223	ENST00000557005	CRIP2	P52943	208 aa	Predicted RBP	3.76	□□□□□ -1.81
SYNE2-223	ENST00000557005	COX7B2	Q8TF08	81 aa		3.76	□□□□□ -1.81
SYNE2-223	ENST00000557005	ZFAND3	Q9H8U3	227 aa		3.76	□□□□□ -1.81
SYNE2-223	ENST00000557005	C14orf132	Q9NPU4	83 aa		3.76	□□□□□ -1.81
SYNE2-223	ENST00000557005		A0A1B0GX51	115 aa		3.76	□□□□□ -1.81
SYNE2-223	ENST00000557005		H3BUA1	57 aa		3.76	□□□□□ -1.81
SYNE2-223	ENST00000557005		J3KT08	172 aa		3.76	□□□□□ -1.81
SYNE2-223	ENST00000557005	SDIM1	Q6ZPB5	146 aa		3.76	□□□□□ -1.81
SYNE2-223	ENST00000557005	SLC25A29	Q8N8R3	303 aa		3.76	□□□□□ -1.81
SYNE2-223	ENST00000557005	EDN2	P20800	178 aa		3.76	□□□□□ -1.81
SYNE2-223	ENST00000557005	XCL1	P47992	114 aa		3.76	□□□□□ -1.81
SYNE2-223	ENST00000557005	HHLA3	Q9XRX5	114 aa		3.76	□□□□□ -1.81
SYNE2-223	ENST00000557005	UTRN	P46939	3433 aa		3.75	□□□□□ -1.81
SYNE2-223	ENST00000557005	TRAV4	A0A0B4J268	109 aa		3.75	□□□□□ -1.81
SYNE2-223	ENST00000557005	BLCAP	P62952	87 aa		3.75	□□□□□ -1.81
SYNE2-223	ENST00000557005	ADORA2A-AS1	P86434	159 aa		3.75	□□□□□ -1.81
SYNE2-223	ENST00000557005	ZMAT4	Q9H898	229 aa		3.75	□□□□□ -1.81
SYNE2-223	ENST00000557005	SPANXA1	Q9NS26	97 aa		3.75	□□□□□ -1.81
SYNE2-223	ENST00000557005	LENEP	Q9Y5L5	61 aa		3.75	□□□□□ -1.81
SYNE2-223	ENST00000557005	IGLV4-69	A0A075B6H9	119 aa		3.75	□□□□□ -1.81
SYNE2-223	ENST00000557005		B4DSR2	109 aa		3.75	□□□□□ -1.81
SYNE2-223	ENST00000557005	RNF223	E7ERA6	249 aa		3.75	□□□□□ -1.81
SYNE2-223	ENST00000557005		K7ENP7	123 aa		3.75	□□□□□ -1.81
SYNE2-223	ENST00000557005	TSPEAR-AS2	P59090	65 aa		3.75	□□□□□ -1.81
SYNE2-223	ENST00000557005	DEFB112	Q30KQ8	113 aa		3.75	□□□□□ -1.81
SYNE2-223	ENST00000557005	DNAJC30	Q96LL9	226 aa		3.75	□□□□□ -1.81
SYNE2-223	ENST00000557005	IGHV4-4	A0A075B6R2	117 aa		3.75	□□□□□ -1.81
SYNE2-223	ENST00000557005	CLPSL1	A2RUU4	121 aa		3.75	□□□□□ -1.81
SYNE2-223	ENST00000557005		Q6ZSV7	163 aa		3.75	□□□□□ -1.81
SYNE2-223	ENST00000557005	C3orf22	Q8N5N4	141 aa		3.75	□□□□□ -1.81
SYNE2-223	ENST00000557005	LINC00467	Q9BRT7	94 aa		3.75	□□□□□ -1.81
SYNE2-223	ENST00000557005	ZNF22	P17026	224 aa	Predicted RBP	3.75	□□□□□ -1.81
SYNE2-223	ENST00000557005	ARID1A	O14497	2285 aa		3.74	□□□□□ -1.81
SYNE2-223	ENST00000557005	MRGPRG-AS1	Q2M3A8	158 aa		3.74	□□□□□ -1.81
SYNE2-223	ENST00000557005		H7C423	109 aa		3.74	□□□□□ -1.81
SYNE2-223	ENST00000557005	HAMP	P81172	84 aa		3.74	□□□□□ -1.81
SYNE2-223	ENST00000557005	DYSF	O75923	2080 aa		3.74	□□□□□ -1.81
SYNE2-223	ENST00000557005	SLPI	P03973	132 aa		3.74	□□□□□ -1.81
SYNE2-223	ENST00000557005	KIAA2026	Q5HYC2	2103 aa		3.74	□□□□□ -1.81
SYNE2-223	ENST00000557005	IGLV4-3	A0A075B6K6	122 aa		3.74	□□□□□ -1.81
SYNE2-223	ENST00000557005	TSHB	P01222	138 aa		3.74	□□□□□ -1.81
SYNE2-223	ENST00000557005	PCSK5	Q92824	1860 aa		3.73	□□□□□ -1.81
SYNE2-223	ENST00000557005	IGHG2	P01859	326 aa		3.73	□□□□□ -1.81
SYNE2-223	ENST00000557005	LINC00694	P0DN24	101 aa		3.73	□□□□□ -1.81
SYNE2-223	ENST00000557005	C20orf203	Q8NBC4	194 aa		3.73	□□□□□ -1.81
SYNE2-223	ENST00000557005	VSIG2	Q96IQ7	327 aa		3.73	□□□□□ -1.81
SYNE2-223	ENST00000557005	SND1-IT1	Q9HBX3	110 aa		3.73	□□□□□ -1.81
SYNE2-223	ENST00000557005	MED12	Q93074	2177 aa		3.73	□□□□□ -1.81
SYNE2-223	ENST00000557005	DSCR9	P59020	149 aa		3.73	□□□□□ -1.81
SYNE2-223	ENST00000557005	DAZ2	Q13117	558 aa	Known RBP	3.73	□□□□□ -1.81
SYNE2-223	ENST00000557005	DAZ4	Q86SG3	579 aa	Known RBP	3.73	□□□□□ -1.81
SYNE2-223	ENST00000557005	DSCR8	Q96T75	97 aa		3.73	□□□□□ -1.81
SYNE2-223	ENST00000557005	DAZ3	Q9NR90	486 aa	Known RBP	3.73	□□□□□ -1.81
SYNE2-223	ENST00000557005	PDE4DIP	Q5VU43	2346 aa		3.73	□□□□□ -1.81
SYNE2-223	ENST00000557005	IGHV4-61	A0A0C4DH41	118 aa		3.73	□□□□□ -1.81
SYNE2-223	ENST00000557005	C5orf38	Q86SI9	138 aa		3.73	□□□□□ -1.81
SYNE2-223	ENST00000557005	SPANXD	Q9BXN6	97 aa		3.73	□□□□□ -1.81
SYNE2-223	ENST00000557005	IGHV3-33	P01772	117 aa		3.73	□□□□□ -1.81
SYNE2-223	ENST00000557005	UBL5	Q9BZL1	73 aa		3.73	□□□□□ -1.81
SYNE2-223	ENST00000557005	ESPL1	Q14674	2120 aa		3.73	□□□□□ -1.81
SYNE2-223	ENST00000557005	TRBV30	A0A0K0K1B3	111 aa		3.73	□□□□□ -1.81
SYNE2-223	ENST00000557005		H3BT86	120 aa		3.73	□□□□□ -1.81
SYNE2-223	ENST00000557005	ATOX1	O00244	68 aa		3.73	□□□□□ -1.81
SYNE2-223	ENST00000557005	RNASE3	P12724	160 aa	Known RBP	3.73	□□□□□ -1.81
SYNE2-223	ENST00000557005	NRGN	Q92686	78 aa		3.73	□□□□□ -1.81
SYNE2-223	ENST00000557005	RP1	P56715	2156 aa		3.72	□□□□□ -1.81
SYNE2-223	ENST00000557005	IGHV4-30-2	A0A087WSY4	118 aa		3.72	□□□□□ -1.81
SYNE2-223	ENST00000557005	TRAV25	A0A0B4J276	109 aa		3.72	□□□□□ -1.81
SYNE2-223	ENST00000557005	LINC01546	A6NGU7	62 aa		3.72	□□□□□ -1.81
SYNE2-223	ENST00000557005	PRM2	P04554	102 aa		3.72	□□□□□ -1.81
SYNE2-223	ENST00000557005	WFDC9	Q8NEX5	89 aa		3.72	□□□□□ -1.81
SYNE2-223	ENST00000557005	SPANXC	Q9NY87	97 aa		3.72	□□□□□ -1.81
SYNE2-223	ENST00000557005	IGLV2-18	A0A075B6J9	118 aa		3.72	□□□□□ -1.81

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