RNA–Protein interactions for RNA: ENST00000556486.5

SCFD1-220, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 974 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-220ENST00000556486 NAGKQ9UJ70 344 aa6.64□□□□□ -1.35
SCFD1-220ENST00000556486 TRAV8-1A0A0A6YYK1 113 aa6.63□□□□□ -1.35
SCFD1-220ENST00000556486 TRAV8-6A0A0B4J262 113 aa6.63□□□□□ -1.35
SCFD1-220ENST00000556486 F8WDY8 70 aa6.63□□□□□ -1.35
SCFD1-220ENST00000556486 RS1O15537 224 aa6.63□□□□□ -1.35
SCFD1-220ENST00000556486 RPL12P30050 165 aaKnown RBP6.63□□□□□ -1.35
SCFD1-220ENST00000556486 PPT1P50897 306 aa6.63□□□□□ -1.35
SCFD1-220ENST00000556486 RHOHQ15669 191 aa6.63□□□□□ -1.35
SCFD1-220ENST00000556486 ACOT6Q3I5F7 207 aaPredicted RBP6.63□□□□□ -1.35
SCFD1-220ENST00000556486 ZNF876PQ49A33 203 aa6.63□□□□□ -1.35
SCFD1-220ENST00000556486 LELP1Q5T871 98 aa6.63□□□□□ -1.35
SCFD1-220ENST00000556486 CFAP126Q5VTH2 177 aa6.63□□□□□ -1.35
SCFD1-220ENST00000556486 Q6ZSA8 131 aa6.63□□□□□ -1.35
SCFD1-220ENST00000556486 SCGB1C1Q8TD33 95 aa6.63□□□□□ -1.35
SCFD1-220ENST00000556486 ASB13Q8WXK3 278 aa6.63□□□□□ -1.35
SCFD1-220ENST00000556486 C9orf85Q96MD7 179 aa6.63□□□□□ -1.35
SCFD1-220ENST00000556486 Q9HAA7 133 aa6.63□□□□□ -1.35
SCFD1-220ENST00000556486 INMT-MINDY4F8WBC2 141 aa6.62□□□□□ -1.35
SCFD1-220ENST00000556486 MGST1P10620 155 aaKnown RBP6.62□□□□□ -1.35
SCFD1-220ENST00000556486 IFITM3Q01628 133 aa6.62□□□□□ -1.35
SCFD1-220ENST00000556486 PRR26Q8N8Z3 221 aa6.62□□□□□ -1.35
SCFD1-220ENST00000556486 OR2G3Q8NGZ4 309 aa6.62□□□□□ -1.35
SCFD1-220ENST00000556486 PRADC1Q9BSG0 188 aa6.62□□□□□ -1.35
SCFD1-220ENST00000556486 GTSF1LQ9H1H1 148 aa6.62□□□□□ -1.35
SCFD1-220ENST00000556486 A0A1W2PPV4 95 aa6.61□□□□□ -1.35
SCFD1-220ENST00000556486 F6UZH7 168 aa6.61□□□□□ -1.35
SCFD1-220ENST00000556486 TAAR5O14804 337 aa6.61□□□□□ -1.35
SCFD1-220ENST00000556486 LECT2O14960 151 aa6.61□□□□□ -1.35
SCFD1-220ENST00000556486 TCRAP04437 139 aa6.61□□□□□ -1.35
SCFD1-220ENST00000556486 STAG3L2P0CL84 134 aa6.61□□□□□ -1.35
SCFD1-220ENST00000556486 STAG3L3P0CL85 134 aa6.61□□□□□ -1.35
SCFD1-220ENST00000556486 LINC00694P0DN24 101 aa6.61□□□□□ -1.35
SCFD1-220ENST00000556486 KRTAP10-4P60372 401 aaPredicted RBP6.61□□□□□ -1.35
SCFD1-220ENST00000556486 WFDC2Q14508 124 aa6.61□□□□□ -1.35
SCFD1-220ENST00000556486 CD164L2Q6UWJ8 174 aa6.61□□□□□ -1.35
SCFD1-220ENST00000556486 DPPA3Q6W0C5 159 aa6.61□□□□□ -1.35
SCFD1-220ENST00000556486 C5orf17Q8NAS9 161 aa6.61□□□□□ -1.35
SCFD1-220ENST00000556486 NDFIP1Q9BT67 221 aa6.61□□□□□ -1.35
SCFD1-220ENST00000556486 SH3BGRL3Q9H299 93 aa6.61□□□□□ -1.35
SCFD1-220ENST00000556486 WFDC1Q9HC57 220 aa6.61□□□□□ -1.35
SCFD1-220ENST00000556486 LRP2P98164 4655 aa6.6□□□□□ -1.35
SCFD1-220ENST00000556486 IGLV2-11P01706 119 aa6.6□□□□□ -1.35
SCFD1-220ENST00000556486 ARL14EPLP0DKL9 152 aa6.6□□□□□ -1.35
SCFD1-220ENST00000556486 RNASE3P12724 160 aaKnown RBP6.6□□□□□ -1.35
SCFD1-220ENST00000556486 ZNF80P51504 273 aaPredicted RBP6.6□□□□□ -1.35
SCFD1-220ENST00000556486 RAB2AP61019 212 aa6.6□□□□□ -1.35
SCFD1-220ENST00000556486 OR10J3Q5JRS4 329 aa6.6□□□□□ -1.35
SCFD1-220ENST00000556486 ZFP2Q6ZN57 461 aa6.6□□□□□ -1.35
SCFD1-220ENST00000556486 SCXQ7RTU7 201 aa6.6□□□□□ -1.35
SCFD1-220ENST00000556486 SMIM3Q9BZL3 60 aa6.6□□□□□ -1.35
SCFD1-220ENST00000556486 IGLV2-33A0A075B6J2 118 aaPredicted RBP6.59□□□□□ -1.35
SCFD1-220ENST00000556486 TRAV8-3A0A0A6YYJ7 113 aa6.59□□□□□ -1.35
SCFD1-220ENST00000556486 K7EQM0 130 aa6.59□□□□□ -1.35
SCFD1-220ENST00000556486 EIF3GO75821 320 aaKnown RBP eCLIP6.59□□□□□ -1.35
SCFD1-220ENST00000556486 OXTP01178 125 aa6.59□□□□□ -1.35
SCFD1-220ENST00000556486 GCGP01275 180 aa6.59□□□□□ -1.35
SCFD1-220ENST00000556486 GNG5P63218 68 aa6.59□□□□□ -1.35
SCFD1-220ENST00000556486 ZNF506Q5JVG8 444 aa6.59□□□□□ -1.35
SCFD1-220ENST00000556486 OR10G9Q8NGN4 311 aa6.59□□□□□ -1.35
SCFD1-220ENST00000556486 OR10G7Q8NGN6 311 aa6.59□□□□□ -1.35
SCFD1-220ENST00000556486 ATP6V0E2Q8NHE4 81 aa6.59□□□□□ -1.35
SCFD1-220ENST00000556486 ALKBH7Q9BT30 221 aaPredicted RBP6.59□□□□□ -1.35
SCFD1-220ENST00000556486 PSMG3Q9BT73 122 aaPredicted RBP6.59□□□□□ -1.35
SCFD1-220ENST00000556486 RPH3ALQ9UNE2 315 aa6.59□□□□□ -1.35
SCFD1-220ENST00000556486 COX11Q9Y6N1 276 aa6.59□□□□□ -1.35
SCFD1-220ENST00000556486 PKHD1L1Q86WI1 4243 aa6.58□□□□□ -1.36
SCFD1-220ENST00000556486 A8MWV9 139 aa6.58□□□□□ -1.36
SCFD1-220ENST00000556486 GGTLC3B5MD39 225 aa6.58□□□□□ -1.36
SCFD1-220ENST00000556486 SSNA1O43805 119 aa6.58□□□□□ -1.36
SCFD1-220ENST00000556486 CDC34P49427 236 aaPredicted RBP6.58□□□□□ -1.36
SCFD1-220ENST00000556486 SERF2P84101 59 aa6.58□□□□□ -1.36
SCFD1-220ENST00000556486 FLI1Q01543 452 aaPredicted RBP6.58□□□□□ -1.36
SCFD1-220ENST00000556486 SMUG1Q53HV7 270 aa6.58□□□□□ -1.36
SCFD1-220ENST00000556486 SAPCD1Q5SSQ6 148 aa6.58□□□□□ -1.36
SCFD1-220ENST00000556486 CYB561D1Q8N8Q1 229 aa6.58□□□□□ -1.36
SCFD1-220ENST00000556486 TMEM75Q8N9X5 138 aa6.58□□□□□ -1.36
SCFD1-220ENST00000556486 LINC00479Q96M42 142 aa6.58□□□□□ -1.36
SCFD1-220ENST00000556486 PSG8Q9UQ74 426 aa6.58□□□□□ -1.36
SCFD1-220ENST00000556486 A0A087WWC5 75 aa6.57□□□□□ -1.36
SCFD1-220ENST00000556486 A0A0U1RRA0 63 aa6.57□□□□□ -1.36
SCFD1-220ENST00000556486 HMGB3O15347 200 aaKnown RBP6.57□□□□□ -1.36
SCFD1-220ENST00000556486 IGLV2-8P01709 118 aa6.57□□□□□ -1.36
SCFD1-220ENST00000556486 IGHV3-30P01768 117 aa6.57□□□□□ -1.36
SCFD1-220ENST00000556486 IGHV3-33P01772 117 aa6.57□□□□□ -1.36
SCFD1-220ENST00000556486 MBP02144 154 aa6.57□□□□□ -1.36
SCFD1-220ENST00000556486 IGHV3-30-3P0DP02 117 aa6.57□□□□□ -1.36
SCFD1-220ENST00000556486 IGHV3-30-5P0DP03 117 aa6.57□□□□□ -1.36
SCFD1-220ENST00000556486 GCHFRP30047 84 aa6.57□□□□□ -1.36
SCFD1-220ENST00000556486 HNRNPA3P51991 378 aaKnown RBP6.57□□□□□ -1.36
SCFD1-220ENST00000556486 SSTP61278 116 aa6.57□□□□□ -1.36
SCFD1-220ENST00000556486 ZFP69Q49AA0 526 aa6.57□□□□□ -1.36
SCFD1-220ENST00000556486 UFSP1Q6NVU6 142 aa6.57□□□□□ -1.36
SCFD1-220ENST00000556486 AQP10Q96PS8 301 aa6.57□□□□□ -1.36
SCFD1-220ENST00000556486 PARLQ9H300 379 aa6.57□□□□□ -1.36
SCFD1-220ENST00000556486 TMEM167BQ9NRX6 74 aa6.57□□□□□ -1.36
SCFD1-220ENST00000556486 EPDR1Q9UM22 224 aa6.57□□□□□ -1.36
SCFD1-220ENST00000556486 IGLV5-37A0A075B6J1 123 aa6.56□□□□□ -1.36
SCFD1-220ENST00000556486 IGHV3-73A0A0B4J1V6 119 aa6.56□□□□□ -1.36
SCFD1-220ENST00000556486 IGKV3D-20A0A0C4DH25 116 aa6.56□□□□□ -1.36
SCFD1-220ENST00000556486 A0A1W2PRE2 83 aa6.56□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 50.4 ms