RNA–Protein interactions for RNA: ENST00000553576.5

VIPAS39-204, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

TSL 4

Gene VIPAS39, Length 547 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-204ENST00000553576 YAE1D1Q9NRH1 226 aa4.44□□□□□ -1.7
VIPAS39-204ENST00000553576 ZNF256Q9Y2P7 627 aaPredicted RBP4.44□□□□□ -1.7
VIPAS39-204ENST00000553576 MRPS16Q9Y3D3 137 aaKnown RBP4.44□□□□□ -1.7
VIPAS39-204ENST00000553576 TSSC4Q9Y5U2 329 aaPredicted RBP4.44□□□□□ -1.7
VIPAS39-204ENST00000553576 HLA-DRB4X5D2U9 266 aa4.44□□□□□ -1.7
VIPAS39-204ENST00000553576 NACAE9PAV3 2078 aa4.44□□□□□ -1.7
VIPAS39-204ENST00000553576 TRAV12-3A0A0B4J271 114 aa4.43□□□□□ -1.7
VIPAS39-204ENST00000553576 LINC01549A6NIU2 74 aa4.43□□□□□ -1.7
VIPAS39-204ENST00000553576 J3KRW8 73 aa4.43□□□□□ -1.7
VIPAS39-204ENST00000553576 CCL24O00175 119 aa4.43□□□□□ -1.7
VIPAS39-204ENST00000553576 NCR2O95944 276 aa4.43□□□□□ -1.7
VIPAS39-204ENST00000553576 TFPI2P48307 235 aa4.43□□□□□ -1.7
VIPAS39-204ENST00000553576 CMC4P56277 68 aaPredicted RBP4.43□□□□□ -1.7
VIPAS39-204ENST00000553576 LAGE3Q14657 143 aa4.43□□□□□ -1.7
VIPAS39-204ENST00000553576 DEFB136Q30KP8 78 aa4.43□□□□□ -1.7
VIPAS39-204ENST00000553576 TMEM61Q8N0U2 210 aa4.43□□□□□ -1.7
VIPAS39-204ENST00000553576 KLHL30-AS1Q8NEE0 82 aa4.43□□□□□ -1.7
VIPAS39-204ENST00000553576 RASL10AQ92737 203 aa4.43□□□□□ -1.7
VIPAS39-204ENST00000553576 RAX2Q96IS3 184 aa4.43□□□□□ -1.7
VIPAS39-204ENST00000553576 AP1S3Q96PC3 154 aa4.43□□□□□ -1.7
VIPAS39-204ENST00000553576 SNHG12Q9BXW3 62 aa4.43□□□□□ -1.7
VIPAS39-204ENST00000553576 EDA2RQ9HAV5 297 aa4.43□□□□□ -1.7
VIPAS39-204ENST00000553576 TENM4Q6N022 2769 aa4.43□□□□□ -1.7
VIPAS39-204ENST00000553576 TRGV11A0A075B6L2 103 aa4.42□□□□□ -1.7
VIPAS39-204ENST00000553576 TRBV6-5A0A0K0K1A5 114 aa4.42□□□□□ -1.7
VIPAS39-204ENST00000553576 HSBP1L1C9JCN9 74 aa4.42□□□□□ -1.7
VIPAS39-204ENST00000553576 ATP5LO75964 103 aa4.42□□□□□ -1.7
VIPAS39-204ENST00000553576 CD7P09564 240 aa4.42□□□□□ -1.7
VIPAS39-204ENST00000553576 SMIM17P0DL12 118 aa4.42□□□□□ -1.7
VIPAS39-204ENST00000553576 CD28P10747 220 aa4.42□□□□□ -1.7
VIPAS39-204ENST00000553576 G0S2P27469 103 aa4.42□□□□□ -1.7
VIPAS39-204ENST00000553576 POLR2KP53803 58 aaKnown RBP4.42□□□□□ -1.7
VIPAS39-204ENST00000553576 DEFB131AP59861 70 aa4.42□□□□□ -1.7
VIPAS39-204ENST00000553576 SUMO2P61956 95 aaKnown RBP4.42□□□□□ -1.7
VIPAS39-204ENST00000553576 MAJINQ3KP22 176 aa4.42□□□□□ -1.7
VIPAS39-204ENST00000553576 ORMDL2Q53FV1 153 aa4.42□□□□□ -1.7
VIPAS39-204ENST00000553576 Q8N1Y9 231 aa4.42□□□□□ -1.7
VIPAS39-204ENST00000553576 C14orf178Q8N769 122 aaPredicted RBP4.42□□□□□ -1.7
VIPAS39-204ENST00000553576 FAM110AQ9BQ89 295 aa4.42□□□□□ -1.7
VIPAS39-204ENST00000553576 PMCHL2Q9BQD1 86 aa4.42□□□□□ -1.7
VIPAS39-204ENST00000553576 SMIM2Q9BVW6 85 aa4.42□□□□□ -1.7
VIPAS39-204ENST00000553576 CHD6Q8TD26 2715 aa4.42□□□□□ -1.7
VIPAS39-204ENST00000553576 WNK1Q9H4A3 2382 aa4.41□□□□□ -1.7
VIPAS39-204ENST00000553576 TRAV12-2A0A075B6T6 113 aa4.41□□□□□ -1.7
VIPAS39-204ENST00000553576 TRAV26-2A0A0B4J265 109 aa4.41□□□□□ -1.7
VIPAS39-204ENST00000553576 DLEU1O43261 78 aa4.41□□□□□ -1.7
VIPAS39-204ENST00000553576 CRYGDP07320 174 aa4.41□□□□□ -1.7
VIPAS39-204ENST00000553576 PROK1P58294 105 aa4.41□□□□□ -1.7
VIPAS39-204ENST00000553576 SPINK13Q1W4C9 94 aa4.41□□□□□ -1.7
VIPAS39-204ENST00000553576 CD300EQ496F6 205 aaPredicted RBP4.41□□□□□ -1.7
VIPAS39-204ENST00000553576 Q6ZN92 141 aa4.41□□□□□ -1.7
VIPAS39-204ENST00000553576 ATOH7Q8N100 152 aa4.41□□□□□ -1.7
VIPAS39-204ENST00000553576 DYNLRB2Q8TF09 96 aa4.41□□□□□ -1.7
VIPAS39-204ENST00000553576 TMEM158Q8WZ71 300 aa4.41□□□□□ -1.7
VIPAS39-204ENST00000553576 TOMM6Q96B49 74 aa4.41□□□□□ -1.7
VIPAS39-204ENST00000553576 CITED2Q99967 270 aaPredicted RBP4.41□□□□□ -1.7
VIPAS39-204ENST00000553576 MAP6D1Q9H9H5 199 aa4.41□□□□□ -1.7
VIPAS39-204ENST00000553576 MDFICQ9P1T7 246 aa4.41□□□□□ -1.7
VIPAS39-204ENST00000553576 GOLT1BQ9Y3E0 138 aa4.41□□□□□ -1.7
VIPAS39-204ENST00000553576 SELENOKQ9Y6D0 94 aa4.41□□□□□ -1.7
VIPAS39-204ENST00000553576 TLN2Q9Y4G6 2542 aa4.4□□□□□ -1.7
VIPAS39-204ENST00000553576 ITPR2Q14571 2701 aa4.4□□□□□ -1.7
VIPAS39-204ENST00000553576 FLNAP21333 2647 aaKnown RBP4.4□□□□□ -1.7
VIPAS39-204ENST00000553576 TRAV12-1A0A0B4J245 112 aa4.4□□□□□ -1.71
VIPAS39-204ENST00000553576 TRBV27A0A0K0K1C4 114 aa4.4□□□□□ -1.71
VIPAS39-204ENST00000553576 hDV102S1A0JD36 115 aa4.4□□□□□ -1.71
VIPAS39-204ENST00000553576 RBMY1BA6NDE4 496 aaKnown RBP4.4□□□□□ -1.71
VIPAS39-204ENST00000553576 RBMY1EA6NEQ0 496 aaKnown RBP4.4□□□□□ -1.71
VIPAS39-204ENST00000553576 KNCNA6PVL3 124 aa4.4□□□□□ -1.71
VIPAS39-204ENST00000553576 VCYO14598 125 aa4.4□□□□□ -1.71
VIPAS39-204ENST00000553576 TCAPO15273 167 aa4.4□□□□□ -1.71
VIPAS39-204ENST00000553576 SIVA1O15304 175 aa4.4□□□□□ -1.71
VIPAS39-204ENST00000553576 SPRY2O43597 315 aa4.4□□□□□ -1.71
VIPAS39-204ENST00000553576 RBMY1DP0C7P1 496 aaKnown RBP4.4□□□□□ -1.71
VIPAS39-204ENST00000553576 COX8AP10176 69 aa4.4□□□□□ -1.71
VIPAS39-204ENST00000553576 HNRNPA3P51991 378 aaKnown RBP4.4□□□□□ -1.71
VIPAS39-204ENST00000553576 FXYD7P58549 80 aa4.4□□□□□ -1.71
VIPAS39-204ENST00000553576 NUTF2P61970 127 aaKnown RBP4.4□□□□□ -1.71
VIPAS39-204ENST00000553576 ODF1Q14990 250 aa4.4□□□□□ -1.71
VIPAS39-204ENST00000553576 KHDC1LQ5JSQ8 128 aa4.4□□□□□ -1.71
VIPAS39-204ENST00000553576 SLC25A34Q6PIV7 304 aa4.4□□□□□ -1.71
VIPAS39-204ENST00000553576 DUX3Q96PT4 197 aa4.4□□□□□ -1.71
VIPAS39-204ENST00000553576 SPXQ9BT56 116 aa4.4□□□□□ -1.71
VIPAS39-204ENST00000553576 TIMM8BQ9Y5J9 83 aaPredicted RBP4.4□□□□□ -1.71
VIPAS39-204ENST00000553576 SONP18583 2426 aaKnown RBP4.4□□□□□ -1.71
VIPAS39-204ENST00000553576 M0QY20 66 aa4.39□□□□□ -1.71
VIPAS39-204ENST00000553576 LY6G6DO95868 133 aa4.39□□□□□ -1.71
VIPAS39-204ENST00000553576 IGKV3-20P01619 116 aa4.39□□□□□ -1.71
VIPAS39-204ENST00000553576 PRSS1P07477 247 aa4.39□□□□□ -1.71
VIPAS39-204ENST00000553576 RBMY1A1P0DJD3 496 aaKnown RBP4.39□□□□□ -1.71
VIPAS39-204ENST00000553576 RBMY1CP0DJD4 496 aa4.39□□□□□ -1.71
VIPAS39-204ENST00000553576 RBMY1FQ15415 496 aaKnown RBP4.39□□□□□ -1.71
VIPAS39-204ENST00000553576 BEAN1Q3B7T3 259 aa4.39□□□□□ -1.71
VIPAS39-204ENST00000553576 ODF3L2Q3SX64 289 aa4.39□□□□□ -1.71
VIPAS39-204ENST00000553576 UFSP1Q6NVU6 142 aa4.39□□□□□ -1.71
VIPAS39-204ENST00000553576 ERASQ7Z444 233 aa4.39□□□□□ -1.71
VIPAS39-204ENST00000553576 RPL39LQ96EH5 51 aaKnown RBP4.39□□□□□ -1.71
VIPAS39-204ENST00000553576 MCRIP2Q9BUT9 160 aaKnown RBP4.39□□□□□ -1.71
VIPAS39-204ENST00000553576 JPT2Q9H910 190 aa4.39□□□□□ -1.71
VIPAS39-204ENST00000553576 HHLA3Q9XRX5 114 aa4.39□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms