RNA–Protein interactions for RNA: ENST00000553128.5

VPS29-211, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 449 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-211ENST00000553128 HMGB3O15347 200 aaKnown RBP8.06□□□□□ -1.12
VPS29-211ENST00000553128 TCRAP04437 139 aa8.06□□□□□ -1.12
VPS29-211ENST00000553128 S100A5P33763 92 aa8.06□□□□□ -1.12
VPS29-211ENST00000553128 SMUG1Q53HV7 270 aa8.06□□□□□ -1.12
VPS29-211ENST00000553128 PRNTQ86SH4 94 aa8.06□□□□□ -1.12
VPS29-211ENST00000553128 PRR34Q9NV39 138 aa8.06□□□□□ -1.12
VPS29-211ENST00000553128 IGLV10-54A0A075B6I4 117 aa8.05□□□□□ -1.12
VPS29-211ENST00000553128 LINC00269Q8N2A0 174 aa8.05□□□□□ -1.12
VPS29-211ENST00000553128 CLRN3Q8NCR9 226 aa8.05□□□□□ -1.12
VPS29-211ENST00000553128 TRBV7-3A0A075B6L6 115 aa8.04□□□□□ -1.12
VPS29-211ENST00000553128 CENPXA8MT69 81 aa8.04□□□□□ -1.12
VPS29-211ENST00000553128 H0YIZ8 118 aa8.04□□□□□ -1.12
VPS29-211ENST00000553128 NOL3O60936 208 aaKnown RBP8.04□□□□□ -1.12
VPS29-211ENST00000553128 PTTG1O95997 202 aa8.04□□□□□ -1.12
VPS29-211ENST00000553128 RPL36AP83881 106 aaKnown RBP8.04□□□□□ -1.12
VPS29-211ENST00000553128 FLI1Q01543 452 aaPredicted RBP8.04□□□□□ -1.12
VPS29-211ENST00000553128 LYPD6BQ8NI32 183 aa8.04□□□□□ -1.12
VPS29-211ENST00000553128 RPL36ALQ969Q0 106 aaKnown RBP8.04□□□□□ -1.12
VPS29-211ENST00000553128 SFRP2Q96HF1 295 aa8.04□□□□□ -1.12
VPS29-211ENST00000553128 CHCHD5Q9BSY4 110 aa8.04□□□□□ -1.12
VPS29-211ENST00000553128 IL36BQ9NZH7 164 aa8.04□□□□□ -1.12
VPS29-211ENST00000553128 TRBV10-1A0A0K0K1A3 114 aa8.03□□□□□ -1.12
VPS29-211ENST00000553128 PLA2G10O15496 165 aa8.03□□□□□ -1.12
VPS29-211ENST00000553128 ARMS2P0C7Q2 107 aa8.03□□□□□ -1.12
VPS29-211ENST00000553128 RBX1P62877 108 aa8.03□□□□□ -1.12
VPS29-211ENST00000553128 ZFP69Q49AA0 526 aa8.03□□□□□ -1.12
VPS29-211ENST00000553128 REG3GQ6UW15 175 aa8.03□□□□□ -1.12
VPS29-211ENST00000553128 SPINK6Q6UWN8 80 aa8.03□□□□□ -1.12
VPS29-211ENST00000553128 NTM-AS1Q6ZSK4 140 aa8.03□□□□□ -1.12
VPS29-211ENST00000553128 GRIFINA4D1Z8 144 aa8.02□□□□□ -1.13
VPS29-211ENST00000553128 SIX6O95475 246 aa8.02□□□□□ -1.13
VPS29-211ENST00000553128 TCRBP04435 133 aa8.02□□□□□ -1.13
VPS29-211ENST00000553128 IL7P13232 177 aa8.02□□□□□ -1.13
VPS29-211ENST00000553128 RAB2AP61019 212 aa8.02□□□□□ -1.13
VPS29-211ENST00000553128 COX6A2Q02221 97 aa8.02□□□□□ -1.13
VPS29-211ENST00000553128 GAGE6Q13070 117 aa8.02□□□□□ -1.13
VPS29-211ENST00000553128 SRSF9Q13242 221 aaKnown RBP eCLIP8.02□□□□□ -1.13
VPS29-211ENST00000553128 MAJINQ3KP22 176 aa8.02□□□□□ -1.13
VPS29-211ENST00000553128 PQLC2Q6ZP29 291 aa8.02□□□□□ -1.13
VPS29-211ENST00000553128 C5orf17Q8NAS9 161 aa8.02□□□□□ -1.13
VPS29-211ENST00000553128 NEXN-AS1Q8NBZ9 246 aa8.02□□□□□ -1.13
VPS29-211ENST00000553128 OR11H4Q8NGC9 324 aa8.02□□□□□ -1.13
VPS29-211ENST00000553128 OR10G8Q8NGN5 311 aa8.02□□□□□ -1.13
VPS29-211ENST00000553128 NUDT15Q9NV35 164 aa8.02□□□□□ -1.13
VPS29-211ENST00000553128 IGKV2-24A0A0C4DH68 120 aa8.01□□□□□ -1.13
VPS29-211ENST00000553128 SERTM2A0A1B0GWG4 89 aa8.01□□□□□ -1.13
VPS29-211ENST00000553128 B4DEV8 164 aa8.01□□□□□ -1.13
VPS29-211ENST00000553128 M0R381 172 aa8.01□□□□□ -1.13
VPS29-211ENST00000553128 CNPY1Q3B7I2 92 aa8.01□□□□□ -1.13
VPS29-211ENST00000553128 LRRC37A5PQ49AS3 106 aa8.01□□□□□ -1.13
VPS29-211ENST00000553128 PRSS3P2Q8NHM4 247 aa8.01□□□□□ -1.13
VPS29-211ENST00000553128 TRAV16A0A0A6YYK6 109 aaPredicted RBP8□□□□□ -1.13
VPS29-211ENST00000553128 TRAV34A0A0B4J273 112 aa8□□□□□ -1.13
VPS29-211ENST00000553128 KRBOX1C9JBD0 128 aa8□□□□□ -1.13
VPS29-211ENST00000553128 M0R036 132 aa8□□□□□ -1.13
VPS29-211ENST00000553128 ARL14EPLP0DKL9 152 aa8□□□□□ -1.13
VPS29-211ENST00000553128 CRIP1P50238 77 aa8□□□□□ -1.13
VPS29-211ENST00000553128 RAB5CP51148 216 aa8□□□□□ -1.13
VPS29-211ENST00000553128 LCE2AQ5TA79 106 aaPredicted RBP8□□□□□ -1.13
VPS29-211ENST00000553128 STPG4Q8N801 248 aa8□□□□□ -1.13
VPS29-211ENST00000553128 SMIM3Q9BZL3 60 aa8□□□□□ -1.13
VPS29-211ENST00000553128 AP5S1Q9NUS5 200 aa8□□□□□ -1.13
VPS29-211ENST00000553128 A0A1W2PPV4 95 aa7.99□□□□□ -1.13
VPS29-211ENST00000553128 FABP5P3A8MUU1 101 aa7.99□□□□□ -1.13
VPS29-211ENST00000553128 LYRM1O43325 122 aa7.99□□□□□ -1.13
VPS29-211ENST00000553128 SUMO1P63165 101 aaKnown RBP7.99□□□□□ -1.13
VPS29-211ENST00000553128 REG3AQ06141 175 aa7.99□□□□□ -1.13
VPS29-211ENST00000553128 DNLZQ5SXM8 178 aa7.99□□□□□ -1.13
VPS29-211ENST00000553128 EPDR1Q9UM22 224 aa7.99□□□□□ -1.13
VPS29-211ENST00000553128 ARL2-SNX15V9GYD0 113 aa7.99□□□□□ -1.13
VPS29-211ENST00000553128 K7EQM0 130 aa7.98□□□□□ -1.13
VPS29-211ENST00000553128 SAPCD1Q5SSQ6 148 aa7.98□□□□□ -1.13
VPS29-211ENST00000553128 GFRA4Q9GZZ7 299 aa7.98□□□□□ -1.13
VPS29-211ENST00000553128 WFDC1Q9HC57 220 aa7.98□□□□□ -1.13
VPS29-211ENST00000553128 PHLDA3Q9Y5J5 127 aa7.98□□□□□ -1.13
VPS29-211ENST00000553128 PRR27Q6MZM9 219 aa7.97□□□□□ -1.13
VPS29-211ENST00000553128 C15orf56Q8N910 161 aa7.97□□□□□ -1.13
VPS29-211ENST00000553128 SUN5Q8TC36 379 aa7.97□□□□□ -1.13
VPS29-211ENST00000553128 SCGB1C1Q8TD33 95 aa7.97□□□□□ -1.13
VPS29-211ENST00000553128 HSPB11Q9Y547 144 aa7.97□□□□□ -1.13
VPS29-211ENST00000553128 TMSB15BA0A087X1C1 80 aa7.96□□□□□ -1.14
VPS29-211ENST00000553128 H7C1H1 209 aa7.96□□□□□ -1.14
VPS29-211ENST00000553128 NDUFS6O75380 124 aaKnown RBP7.96□□□□□ -1.14
VPS29-211ENST00000553128 H2AFB2P0C5Z0 115 aa7.96□□□□□ -1.14
VPS29-211ENST00000553128 STAG3L2P0CL84 134 aa7.96□□□□□ -1.14
VPS29-211ENST00000553128 STAG3L3P0CL85 134 aa7.96□□□□□ -1.14
VPS29-211ENST00000553128 GCHFRP30047 84 aa7.96□□□□□ -1.14
VPS29-211ENST00000553128 PKIAP61925 76 aa7.96□□□□□ -1.14
VPS29-211ENST00000553128 C20orf203Q8NBC4 194 aa7.96□□□□□ -1.14
VPS29-211ENST00000553128 RBM38Q9H0Z9 239 aaKnown RBP7.96□□□□□ -1.14
VPS29-211ENST00000553128 IGLV4-60A0A075B6I1 120 aa7.95□□□□□ -1.14
VPS29-211ENST00000553128 A0A096LNI7 61 aa7.95□□□□□ -1.14
VPS29-211ENST00000553128 SH2D1AO60880 128 aa7.95□□□□□ -1.14
VPS29-211ENST00000553128 TPT1P13693 172 aaKnown RBP7.95□□□□□ -1.14
VPS29-211ENST00000553128 RAB4BP61018 213 aa7.95□□□□□ -1.14
VPS29-211ENST00000553128 ZNF56Q15929 161 aa7.95□□□□□ -1.14
VPS29-211ENST00000553128 DERL1Q9BUN8 251 aa7.95□□□□□ -1.14
VPS29-211ENST00000553128 TRBV6-1A0A0K0K1D8 114 aa7.94□□□□□ -1.14
VPS29-211ENST00000553128 CCDC160A6NGH7 325 aa7.94□□□□□ -1.14
VPS29-211ENST00000553128 RPS10P46783 165 aaKnown RBP7.94□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 50.8 ms