RNA–Protein interactions for RNA: ENST00000552720.5

LIMA1-213, Transcript of LIM domain and actin binding 1, humanhuman

TSL 1 (best)

Gene LIMA1, Length 2,457 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-213ENST00000552720 CCL19Q99731 98 aa5.61□□□□□ -1.51
LIMA1-213ENST00000552720 PRADC1Q9BSG0 188 aa5.61□□□□□ -1.51
LIMA1-213ENST00000552720 CHD6Q8TD26 2715 aa5.61□□□□□ -1.51
LIMA1-213ENST00000552720 MYO9AB2RTY4 2548 aa5.61□□□□□ -1.51
LIMA1-213ENST00000552720 ATP5J2P56134 94 aa5.6□□□□□ -1.51
LIMA1-213ENST00000552720 WFDC2Q14508 124 aa5.6□□□□□ -1.51
LIMA1-213ENST00000552720 CD300EQ496F6 205 aaPredicted RBP5.6□□□□□ -1.51
LIMA1-213ENST00000552720 SUMO4Q6EEV6 95 aa5.6□□□□□ -1.51
LIMA1-213ENST00000552720 DCANP1Q8TF63 244 aa5.6□□□□□ -1.51
LIMA1-213ENST00000552720 DAZ1Q9NQZ3 744 aaKnown RBP5.6□□□□□ -1.51
LIMA1-213ENST00000552720 ABCA12Q86UK0 2595 aa5.6□□□□□ -1.51
LIMA1-213ENST00000552720 CACNA1AO00555 2505 aa5.6□□□□□ -1.51
LIMA1-213ENST00000552720 FAM208BQ5VWN6 2430 aa5.6□□□□□ -1.51
LIMA1-213ENST00000552720 KLLNB2CW77 178 aa5.6□□□□□ -1.51
LIMA1-213ENST00000552720 CD7P09564 240 aa5.6□□□□□ -1.51
LIMA1-213ENST00000552720 ZNF688P0C7X2 276 aa5.6□□□□□ -1.51
LIMA1-213ENST00000552720 SLC25A16P16260 332 aa5.6□□□□□ -1.51
LIMA1-213ENST00000552720 FAM74A4Q5TZK3 123 aa5.6□□□□□ -1.51
LIMA1-213ENST00000552720 CLEC2AQ6UVW9 174 aa5.6□□□□□ -1.51
LIMA1-213ENST00000552720 FAM159AQ6UWV7 190 aa5.6□□□□□ -1.51
LIMA1-213ENST00000552720 TP53TG1Q9Y2A0 90 aa5.6□□□□□ -1.51
LIMA1-213ENST00000552720 LRRK2Q5S007 2527 aa5.6□□□□□ -1.51
LIMA1-213ENST00000552720 C11orf86A6NJI1 115 aa5.59□□□□□ -1.51
LIMA1-213ENST00000552720 F5H697 171 aa5.59□□□□□ -1.51
LIMA1-213ENST00000552720 CFHR3Q02985 330 aa5.59□□□□□ -1.51
LIMA1-213ENST00000552720 SFTA2Q6UW10 78 aa5.59□□□□□ -1.51
LIMA1-213ENST00000552720 FOXI2Q6ZQN5 318 aa5.59□□□□□ -1.51
LIMA1-213ENST00000552720 PRORYQ9H606 182 aa5.59□□□□□ -1.51
LIMA1-213ENST00000552720 IGLV4-69A0A075B6H9 119 aa5.59□□□□□ -1.51
LIMA1-213ENST00000552720 ZNF815PA8K554 130 aa5.59□□□□□ -1.51
LIMA1-213ENST00000552720 MSMBP08118 114 aa5.59□□□□□ -1.51
LIMA1-213ENST00000552720 MED14OSP0DP75 135 aa5.59□□□□□ -1.51
LIMA1-213ENST00000552720 TAL2Q16559 108 aa5.59□□□□□ -1.51
LIMA1-213ENST00000552720 ZFP2Q6ZN57 461 aa5.59□□□□□ -1.51
LIMA1-213ENST00000552720 SH2D6Q7Z4S9 175 aa5.59□□□□□ -1.51
LIMA1-213ENST00000552720 DUX5Q96PT3 197 aa5.59□□□□□ -1.51
LIMA1-213ENST00000552720 MDFICQ9P1T7 246 aa5.59□□□□□ -1.51
LIMA1-213ENST00000552720 ACACBO00763 2458 aa5.59□□□□□ -1.51
LIMA1-213ENST00000552720 ZNF469Q96JG9 3925 aaPredicted RBP5.59□□□□□ -1.51
LIMA1-213ENST00000552720 TLN2Q9Y4G6 2542 aa5.58□□□□□ -1.52
LIMA1-213ENST00000552720 H3BUA1 57 aa5.58□□□□□ -1.52
LIMA1-213ENST00000552720 NXPH4O95158 308 aa5.58□□□□□ -1.52
LIMA1-213ENST00000552720 IGHV4-59P01825 116 aa5.58□□□□□ -1.52
LIMA1-213ENST00000552720 MORN3Q6PF18 240 aaPredicted RBP5.58□□□□□ -1.52
LIMA1-213ENST00000552720 MAPK1IP1LQ8NDC0 245 aa5.58□□□□□ -1.52
LIMA1-213ENST00000552720 OPRPNQ99935 248 aaPredicted RBP5.58□□□□□ -1.52
LIMA1-213ENST00000552720 ZNF256Q9Y2P7 627 aaPredicted RBP5.58□□□□□ -1.52
LIMA1-213ENST00000552720 AKAP9Q99996 3911 aa5.58□□□□□ -1.52
LIMA1-213ENST00000552720 NACAE9PAV3 2078 aa5.58□□□□□ -1.52
LIMA1-213ENST00000552720 IGIPA6NJ69 53 aa5.58□□□□□ -1.52
LIMA1-213ENST00000552720 COX6B1P14854 86 aa5.58□□□□□ -1.52
LIMA1-213ENST00000552720 POLR2KP53803 58 aaKnown RBP5.58□□□□□ -1.52
LIMA1-213ENST00000552720 SCGB2A2Q13296 93 aa5.58□□□□□ -1.52
LIMA1-213ENST00000552720 RRN3P1Q2M238 152 aa5.58□□□□□ -1.52
LIMA1-213ENST00000552720 SCGB1D4Q6XE38 83 aa5.58□□□□□ -1.52
LIMA1-213ENST00000552720 POM121L12Q8N7R1 296 aa5.58□□□□□ -1.52
LIMA1-213ENST00000552720 SDHAF1A6NFY7 115 aa5.57□□□□□ -1.52
LIMA1-213ENST00000552720 BRI3O95415 125 aa5.57□□□□□ -1.52
LIMA1-213ENST00000552720 TSPEAR-AS2P59090 65 aa5.57□□□□□ -1.52
LIMA1-213ENST00000552720 SPINK13Q1W4C9 94 aa5.57□□□□□ -1.52
LIMA1-213ENST00000552720 ETDBQ3ZM63 59 aa5.57□□□□□ -1.52
LIMA1-213ENST00000552720 IGHV4OR15-8A0A075B7B6 117 aa5.57□□□□□ -1.52
LIMA1-213ENST00000552720 A0A087WW49 117 aa5.57□□□□□ -1.52
LIMA1-213ENST00000552720 CIDEAO60543 219 aa5.57□□□□□ -1.52
LIMA1-213ENST00000552720 PSMB8P28062 276 aa5.57□□□□□ -1.52
LIMA1-213ENST00000552720 DEFB112Q30KQ8 113 aa5.57□□□□□ -1.52
LIMA1-213ENST00000552720 Q8N1Y9 231 aa5.57□□□□□ -1.52
LIMA1-213ENST00000552720 ZNRF2Q8NHG8 242 aa5.57□□□□□ -1.52
LIMA1-213ENST00000552720 SPANXB1Q9NS25 103 aaPredicted RBP5.57□□□□□ -1.52
LIMA1-213ENST00000552720 EPG5Q9HCE0 2579 aa5.57□□□□□ -1.52
LIMA1-213ENST00000552720 WNK1Q9H4A3 2382 aa5.57□□□□□ -1.52
LIMA1-213ENST00000552720 A0A1B0GWB2 263 aa5.56□□□□□ -1.52
LIMA1-213ENST00000552720 LINC01549A6NIU2 74 aa5.56□□□□□ -1.52
LIMA1-213ENST00000552720 HOXA3O43365 443 aaPredicted RBP5.56□□□□□ -1.52
LIMA1-213ENST00000552720 INSL3P51460 131 aa5.56□□□□□ -1.52
LIMA1-213ENST00000552720 PTPN13Q12923 2485 aa5.56□□□□□ -1.52
LIMA1-213ENST00000552720 IGHV3-16A0A0C4DH30 117 aa5.56□□□□□ -1.52
LIMA1-213ENST00000552720 TRBV7-9A0A0J9YWB2 115 aa5.56□□□□□ -1.52
LIMA1-213ENST00000552720 NDUFS8O00217 210 aa5.56□□□□□ -1.52
LIMA1-213ENST00000552720 APOMO95445 188 aa5.56□□□□□ -1.52
LIMA1-213ENST00000552720 PRM2P04554 102 aa5.56□□□□□ -1.52
LIMA1-213ENST00000552720 ID1P41134 155 aa5.56□□□□□ -1.52
LIMA1-213ENST00000552720 SYNJ2BPP57105 145 aa5.56□□□□□ -1.52
LIMA1-213ENST00000552720 SRSF9Q13242 221 aaKnown RBP eCLIP5.56□□□□□ -1.52
LIMA1-213ENST00000552720 ZNF56Q15929 161 aa5.56□□□□□ -1.52
LIMA1-213ENST00000552720 PRO0461Q9UI25 63 aa5.56□□□□□ -1.52
LIMA1-213ENST00000552720 PRRC2AP48634 2157 aaKnown RBP5.55□□□□□ -1.52
LIMA1-213ENST00000552720 LINC01619G3V211 115 aa5.55□□□□□ -1.52
LIMA1-213ENST00000552720 K7EMT4 169 aa5.55□□□□□ -1.52
LIMA1-213ENST00000552720 VCYO14598 125 aa5.55□□□□□ -1.52
LIMA1-213ENST00000552720 PPP1R17O96001 155 aa5.55□□□□□ -1.52
LIMA1-213ENST00000552720 PMVKQ15126 192 aa5.55□□□□□ -1.52
LIMA1-213ENST00000552720 TMEM170BQ5T4T1 132 aa5.55□□□□□ -1.52
LIMA1-213ENST00000552720 KIR2DL4Q99706 377 aa5.55□□□□□ -1.52
LIMA1-213ENST00000552720 MRPL16Q9NX20 251 aaKnown RBP5.55□□□□□ -1.52
LIMA1-213ENST00000552720 CR1P17927 2039 aa5.55□□□□□ -1.52
LIMA1-213ENST00000552720 ZNF462Q96JM2 2506 aa5.55□□□□□ -1.52
LIMA1-213ENST00000552720 A0A0J9YX75 114 aa5.55□□□□□ -1.52
LIMA1-213ENST00000552720 A0A0J9YY99 117 aa5.55□□□□□ -1.52
LIMA1-213ENST00000552720 F8W1H4 67 aa5.55□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 375 ms