RNA–Protein interactions for RNA: ENST00000548650.1

CHMP1A-205, Transcript of charged multivesicular body protein 1A, humanhuman

TSL 3

Gene CHMP1A, Length 566 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1A-205ENST00000548650 FMC1Q96HJ9 113 aa11.53□□□□□ -0.56
CHMP1A-205ENST00000548650 DAZ3Q9NR90 486 aaKnown RBP11.53□□□□□ -0.56
CHMP1A-205ENST00000548650 FAM30AQ9NZY2 134 aa11.53□□□□□ -0.56
CHMP1A-205ENST00000548650 ZFP30Q9Y2G7 519 aa11.53□□□□□ -0.56
CHMP1A-205ENST00000548650 A0A087WWC5 75 aa11.52□□□□□ -0.57
CHMP1A-205ENST00000548650 GRIFINA4D1Z8 144 aa11.52□□□□□ -0.57
CHMP1A-205ENST00000548650 HMSDA8MTL9 139 aa11.52□□□□□ -0.57
CHMP1A-205ENST00000548650 ZNF345Q14585 488 aa11.52□□□□□ -0.57
CHMP1A-205ENST00000548650 LINC01559Q495D7 138 aa11.52□□□□□ -0.57
CHMP1A-205ENST00000548650 FAM162BQ5T6X4 162 aa11.52□□□□□ -0.57
CHMP1A-205ENST00000548650 FAM74A4Q5TZK3 123 aa11.52□□□□□ -0.57
CHMP1A-205ENST00000548650 TRAV8-3A0A0A6YYJ7 113 aa11.51□□□□□ -0.57
CHMP1A-205ENST00000548650 TRBV6-1A0A0K0K1D8 114 aa11.51□□□□□ -0.57
CHMP1A-205ENST00000548650 LTAP01374 205 aa11.51□□□□□ -0.57
CHMP1A-205ENST00000548650 UBE2G1P62253 170 aa11.51□□□□□ -0.57
CHMP1A-205ENST00000548650 ZNF674Q2M3X9 581 aa11.51□□□□□ -0.57
CHMP1A-205ENST00000548650 TCEAL7Q9BRU2 100 aa11.51□□□□□ -0.57
CHMP1A-205ENST00000548650 A0A087WWL8 130 aa11.5□□□□□ -0.57
CHMP1A-205ENST00000548650 C1QBP02746 253 aa11.5□□□□□ -0.57
CHMP1A-205ENST00000548650 FHITP49789 147 aa11.5□□□□□ -0.57
CHMP1A-205ENST00000548650 TOR2AQ5JU69 321 aa11.5□□□□□ -0.57
CHMP1A-205ENST00000548650 Q6ZNX1 250 aa11.5□□□□□ -0.57
CHMP1A-205ENST00000548650 Q6ZSA8 131 aa11.5□□□□□ -0.57
CHMP1A-205ENST00000548650 SFRP2Q96HF1 295 aa11.5□□□□□ -0.57
CHMP1A-205ENST00000548650 TMSB15BA0A087X1C1 80 aa11.49□□□□□ -0.57
CHMP1A-205ENST00000548650 A0A0D9SG52 128 aa11.49□□□□□ -0.57
CHMP1A-205ENST00000548650 FAM229AH3BQW9 127 aa11.49□□□□□ -0.57
CHMP1A-205ENST00000548650 M0R381 172 aa11.49□□□□□ -0.57
CHMP1A-205ENST00000548650 LECT2O14960 151 aa11.49□□□□□ -0.57
CHMP1A-205ENST00000548650 NIT1Q86X76 327 aa11.49□□□□□ -0.57
CHMP1A-205ENST00000548650 PHLDA3Q9Y5J5 127 aa11.49□□□□□ -0.57
CHMP1A-205ENST00000548650 KANTRA0A1W2PQU2 76 aa11.48□□□□□ -0.57
CHMP1A-205ENST00000548650 BCL2L11O43521 198 aa11.48□□□□□ -0.57
CHMP1A-205ENST00000548650 TPT1P13693 172 aaKnown RBP11.48□□□□□ -0.57
CHMP1A-205ENST00000548650 AKR1C3P42330 323 aa11.48□□□□□ -0.57
CHMP1A-205ENST00000548650 ZFP82Q8N141 532 aa11.48□□□□□ -0.57
CHMP1A-205ENST00000548650 ZNF471Q9BX82 626 aaPredicted RBP11.48□□□□□ -0.57
CHMP1A-205ENST00000548650 hCG_2014768A0A024R1R8 64 aa11.47□□□□□ -0.57
CHMP1A-205ENST00000548650 CST9LP1Q5W188 147 aa11.47□□□□□ -0.57
CHMP1A-205ENST00000548650 STOML3Q8TAV4 291 aa11.47□□□□□ -0.57
CHMP1A-205ENST00000548650 DNAJC30Q96LL9 226 aa11.47□□□□□ -0.57
CHMP1A-205ENST00000548650 IGLV2-33A0A075B6J2 118 aaPredicted RBP11.46□□□□□ -0.57
CHMP1A-205ENST00000548650 TRBV10-1A0A0K0K1A3 114 aa11.46□□□□□ -0.57
CHMP1A-205ENST00000548650 PFDN1O60925 122 aa11.46□□□□□ -0.57
CHMP1A-205ENST00000548650 TMUB2Q71RG4 321 aa11.46□□□□□ -0.57
CHMP1A-205ENST00000548650 URGCP-MRPS24S4R325 110 aa11.46□□□□□ -0.57
CHMP1A-205ENST00000548650 PAGE4O60829 102 aa11.45□□□□□ -0.58
CHMP1A-205ENST00000548650 UBE2D3P61077 147 aa11.45□□□□□ -0.58
CHMP1A-205ENST00000548650 UBE2D2P62837 147 aa11.45□□□□□ -0.58
CHMP1A-205ENST00000548650 BAALCQ8WXS3 180 aa11.45□□□□□ -0.58
CHMP1A-205ENST00000548650 COX11Q9Y6N1 276 aa11.45□□□□□ -0.58
CHMP1A-205ENST00000548650 SEC11BP0C7V7 166 aa11.44□□□□□ -0.58
CHMP1A-205ENST00000548650 RPL19P84098 196 aaKnown RBP11.44□□□□□ -0.58
CHMP1A-205ENST00000548650 TCTE3Q8IZS6 198 aa11.44□□□□□ -0.58
CHMP1A-205ENST00000548650 RMI2Q96E14 147 aa11.44□□□□□ -0.58
CHMP1A-205ENST00000548650 CHCHD7Q9BUK0 85 aa11.44□□□□□ -0.58
CHMP1A-205ENST00000548650 KLK12Q9UKR0 248 aa11.44□□□□□ -0.58
CHMP1A-205ENST00000548650 IGKV2D-24A0A075B6R9 120 aa11.43□□□□□ -0.58
CHMP1A-205ENST00000548650 SCO2A0A1W2PP80 73 aa11.43□□□□□ -0.58
CHMP1A-205ENST00000548650 RPL36AP83881 106 aaKnown RBP11.43□□□□□ -0.58
CHMP1A-205ENST00000548650 OR10G8Q8NGN5 311 aa11.43□□□□□ -0.58
CHMP1A-205ENST00000548650 OR10AG1Q8NH19 301 aa11.43□□□□□ -0.58
CHMP1A-205ENST00000548650 FAM213BQ8TBF2 198 aa11.43□□□□□ -0.58
CHMP1A-205ENST00000548650 RPL36ALQ969Q0 106 aaKnown RBP11.43□□□□□ -0.58
CHMP1A-205ENST00000548650 TRBV7-3A0A075B6L6 115 aa11.42□□□□□ -0.58
CHMP1A-205ENST00000548650 CXCL1P09341 107 aa11.42□□□□□ -0.58
CHMP1A-205ENST00000548650 EIF5AP63241 154 aaKnown RBP11.42□□□□□ -0.58
CHMP1A-205ENST00000548650 LINC01620Q4KN68 170 aa11.42□□□□□ -0.58
CHMP1A-205ENST00000548650 ATRAIDQ6UW56 229 aa11.42□□□□□ -0.58
CHMP1A-205ENST00000548650 SFT2D1Q8WV19 159 aa11.42□□□□□ -0.58
CHMP1A-205ENST00000548650 MBD3L1Q8WWY6 194 aa11.42□□□□□ -0.58
CHMP1A-205ENST00000548650 A0A087WX48 190 aa11.41□□□□□ -0.58
CHMP1A-205ENST00000548650 A0A1B0GV50 99 aa11.41□□□□□ -0.58
CHMP1A-205ENST00000548650 LINC00528Q8N1L1 170 aa11.41□□□□□ -0.58
CHMP1A-205ENST00000548650 UBE2WQ96B02 151 aa11.41□□□□□ -0.58
CHMP1A-205ENST00000548650 MLST8Q9BVC4 326 aa11.41□□□□□ -0.58
CHMP1A-205ENST00000548650 UMAD1C9J7I0 102 aa11.4□□□□□ -0.58
CHMP1A-205ENST00000548650 SNAI2O43623 268 aa11.4□□□□□ -0.58
CHMP1A-205ENST00000548650 S100A9P06702 114 aaKnown RBP11.4□□□□□ -0.58
CHMP1A-205ENST00000548650 RAB4BP61018 213 aa11.4□□□□□ -0.58
CHMP1A-205ENST00000548650 ZNF56Q15929 161 aa11.4□□□□□ -0.58
CHMP1A-205ENST00000548650 PRR27Q6MZM9 219 aa11.4□□□□□ -0.58
CHMP1A-205ENST00000548650 SCXQ7RTU7 201 aa11.4□□□□□ -0.58
CHMP1A-205ENST00000548650 AKAP14Q86UN6 197 aa11.4□□□□□ -0.58
CHMP1A-205ENST00000548650 NEXN-AS1Q8NBZ9 246 aa11.4□□□□□ -0.58
CHMP1A-205ENST00000548650 ELOBQ15370 118 aa11.39□□□□□ -0.59
CHMP1A-205ENST00000548650 Q8N976 141 aa11.39□□□□□ -0.59
CHMP1A-205ENST00000548650 SSBP4Q9BWG4 385 aaPredicted RBP11.39□□□□□ -0.59
CHMP1A-205ENST00000548650 TRBV6-8A0A0A6YYG3 113 aa11.38□□□□□ -0.59
CHMP1A-205ENST00000548650 RBFOX3A6NFN3 312 aa11.38□□□□□ -0.59
CHMP1A-205ENST00000548650 BAGE2Q86Y30 109 aa11.38□□□□□ -0.59
CHMP1A-205ENST00000548650 PLA2G1BP04054 148 aaKnown RBP11.37□□□□□ -0.59
CHMP1A-205ENST00000548650 OR5AL1P0C617 328 aa11.37□□□□□ -0.59
CHMP1A-205ENST00000548650 MPV17L2Q567V2 206 aa11.37□□□□□ -0.59
CHMP1A-205ENST00000548650 KCNIP4Q6PIL6 250 aa11.37□□□□□ -0.59
CHMP1A-205ENST00000548650 MUC21A0A0G2JKD1 596 aa11.36□□□□□ -0.59
CHMP1A-205ENST00000548650 MUC21A0A140T8X8 626 aa11.36□□□□□ -0.59
CHMP1A-205ENST00000548650 H2AFB1P0C5Y9 115 aa11.36□□□□□ -0.59
CHMP1A-205ENST00000548650 Q0VG73 95 aa11.36□□□□□ -0.59
CHMP1A-205ENST00000548650 ENHOQ6UWT2 76 aa11.36□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 48.8 ms