RNA–Protein interactions for RNA: ENST00000548539.1

VPS29-205, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 598 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-205ENST00000548539 SPAARA0A1B0GVQ0 90 aa0.47□□□□□ -2.33
VPS29-205ENST00000548539 F2Z2F3 143 aa0.47□□□□□ -2.33
VPS29-205ENST00000548539 PIRTP0C851 137 aa0.47□□□□□ -2.33
VPS29-205ENST00000548539 S100A1P23297 94 aa0.47□□□□□ -2.33
VPS29-205ENST00000548539 SMCO1Q147U7 214 aa0.47□□□□□ -2.33
VPS29-205ENST00000548539 CCDC58Q4VC31 144 aa0.47□□□□□ -2.33
VPS29-205ENST00000548539 C20orf197Q8N268 126 aa0.47□□□□□ -2.33
VPS29-205ENST00000548539 C14orf144Q96I85 54 aa0.47□□□□□ -2.33
VPS29-205ENST00000548539 BICRAQ9NZM4 1560 aa0.47□□□□□ -2.33
VPS29-205ENST00000548539 VIRMAQ69YN4 1812 aaKnown RBP0.47□□□□□ -2.33
VPS29-205ENST00000548539 SPEF2Q9C093 1822 aa0.47□□□□□ -2.33
VPS29-205ENST00000548539 MYH13Q9UKX3 1938 aa0.46□□□□□ -2.34
VPS29-205ENST00000548539 MEGF8Q7Z7M0 2845 aa0.46□□□□□ -2.34
VPS29-205ENST00000548539 RBAKDNA6NC62 111 aa0.46□□□□□ -2.34
VPS29-205ENST00000548539 MIF4GDA9UHW6 222 aaKnown RBP0.46□□□□□ -2.34
VPS29-205ENST00000548539 K7EP13 123 aa0.46□□□□□ -2.34
VPS29-205ENST00000548539 DLEU1O43261 78 aa0.46□□□□□ -2.34
VPS29-205ENST00000548539 PITX3O75364 302 aa0.46□□□□□ -2.34
VPS29-205ENST00000548539 COX4I1P13073 169 aa0.46□□□□□ -2.34
VPS29-205ENST00000548539 PFDN5Q99471 154 aa0.46□□□□□ -2.34
VPS29-205ENST00000548539 C12orf57Q99622 126 aa0.46□□□□□ -2.34
VPS29-205ENST00000548539 C2orf88Q9BSF0 95 aa0.46□□□□□ -2.34
VPS29-205ENST00000548539 PSMG3Q9BT73 122 aaPredicted RBP0.46□□□□□ -2.34
VPS29-205ENST00000548539 TPT1P8Q9HAU6 139 aa0.46□□□□□ -2.34
VPS29-205ENST00000548539 PAIP2BQ9ULR5 123 aaKnown RBP0.46□□□□□ -2.34
VPS29-205ENST00000548539 SOGA1O94964 1423 aa0.46□□□□□ -2.34
VPS29-205ENST00000548539 PRG4Q92954 1404 aaPredicted RBP0.46□□□□□ -2.34
VPS29-205ENST00000548539 ESPL1Q14674 2120 aa0.46□□□□□ -2.34
VPS29-205ENST00000548539 ROCK2O75116 1388 aaKnown RBP0.45□□□□□ -2.34
VPS29-205ENST00000548539 IBTKQ9P2D0 1353 aaPredicted RBP0.45□□□□□ -2.34
VPS29-205ENST00000548539 KIF13AQ9H1H9 1805 aa0.45□□□□□ -2.34
VPS29-205ENST00000548539 PHLPP1O60346 1717 aa0.45□□□□□ -2.34
VPS29-205ENST00000548539 CEP152O94986 1710 aa0.45□□□□□ -2.34
VPS29-205ENST00000548539 NPFFO15130 113 aa0.45□□□□□ -2.34
VPS29-205ENST00000548539 GNG7O60262 68 aa0.45□□□□□ -2.34
VPS29-205ENST00000548539 CCL3L1P16619 93 aa0.45□□□□□ -2.34
VPS29-205ENST00000548539 RRAS2P62070 204 aaPredicted RBP0.45□□□□□ -2.34
VPS29-205ENST00000548539 BTG2P78543 158 aa0.45□□□□□ -2.34
VPS29-205ENST00000548539 SPANXN1Q5VSR9 72 aa0.45□□□□□ -2.34
VPS29-205ENST00000548539 RPL13AP3Q6NVV1 102 aa0.45□□□□□ -2.34
VPS29-205ENST00000548539 SPINK6Q6UWN8 80 aa0.45□□□□□ -2.34
VPS29-205ENST00000548539 Q6ZUT4 128 aa0.45□□□□□ -2.34
VPS29-205ENST00000548539 C4orf33Q8N1A6 199 aa0.45□□□□□ -2.34
VPS29-205ENST00000548539 PLXNA2O75051 1894 aa0.45□□□□□ -2.34
VPS29-205ENST00000548539 CNTLNQ9NXG0 1405 aa0.45□□□□□ -2.34
VPS29-205ENST00000548539 DOCK11Q5JSL3 2073 aa0.44□□□□□ -2.34
VPS29-205ENST00000548539 A0A087WTM6 91 aa0.44□□□□□ -2.34
VPS29-205ENST00000548539 EFCAB10A6NFE3 127 aa0.44□□□□□ -2.34
VPS29-205ENST00000548539 NCR2O95944 276 aa0.44□□□□□ -2.34
VPS29-205ENST00000548539 IFNGP01579 166 aa0.44□□□□□ -2.34
VPS29-205ENST00000548539 S100PP25815 95 aa0.44□□□□□ -2.34
VPS29-205ENST00000548539 NCMAPQ5T1S8 102 aa0.44□□□□□ -2.34
VPS29-205ENST00000548539 SLC48A1Q6P1K1 146 aa0.44□□□□□ -2.34
VPS29-205ENST00000548539 COX7B2Q8TF08 81 aa0.44□□□□□ -2.34
VPS29-205ENST00000548539 TCEAL4Q96EI5 215 aa0.44□□□□□ -2.34
VPS29-205ENST00000548539 PRR15LQ9BU68 103 aa0.44□□□□□ -2.34
VPS29-205ENST00000548539 CCNB3Q8WWL7 1395 aa0.44□□□□□ -2.34
VPS29-205ENST00000548539 PHIPQ8WWQ0 1821 aa0.43□□□□□ -2.34
VPS29-205ENST00000548539 UQCRHLA0A096LP55 91 aa0.43□□□□□ -2.34
VPS29-205ENST00000548539 PHGR1C9JFL3 82 aa0.43□□□□□ -2.34
VPS29-205ENST00000548539 MCRIP1C9JLW8 97 aa0.43□□□□□ -2.34
VPS29-205ENST00000548539 MPC2O95563 127 aa0.43□□□□□ -2.34
VPS29-205ENST00000548539 UQCRHP07919 91 aa0.43□□□□□ -2.34
VPS29-205ENST00000548539 RBP2P50120 134 aa0.43□□□□□ -2.34
VPS29-205ENST00000548539 COPZ1P61923 177 aa0.43□□□□□ -2.34
VPS29-205ENST00000548539 RPS25P62851 125 aaKnown RBP0.43□□□□□ -2.34
VPS29-205ENST00000548539 SSBP1Q04837 148 aaKnown RBP0.43□□□□□ -2.34
VPS29-205ENST00000548539 RPL7L1Q6DKI1 246 aaKnown RBP0.43□□□□□ -2.34
VPS29-205ENST00000548539 VMO1Q7Z5L0 202 aa0.43□□□□□ -2.34
VPS29-205ENST00000548539 SDF2Q99470 211 aa0.43□□□□□ -2.34
VPS29-205ENST00000548539 TSC22D3Q99576 134 aa0.43□□□□□ -2.34
VPS29-205ENST00000548539 SNHG12Q9BXW3 62 aa0.43□□□□□ -2.34
VPS29-205ENST00000548539 PRO1933Q9H354 126 aa0.43□□□□□ -2.34
VPS29-205ENST00000548539 PROK2Q9HC23 129 aa0.43□□□□□ -2.34
VPS29-205ENST00000548539 FAIMQ9NVQ4 179 aa0.43□□□□□ -2.34
VPS29-205ENST00000548539 SCN3BQ9NY72 215 aa0.43□□□□□ -2.34
VPS29-205ENST00000548539 TANC1Q9C0D5 1861 aa0.42□□□□□ -2.34
VPS29-205ENST00000548539 FAM92AA1XBS5 289 aa0.42□□□□□ -2.34
VPS29-205ENST00000548539 F6UZH7 168 aa0.42□□□□□ -2.34
VPS29-205ENST00000548539 CORTO00230 105 aa0.42□□□□□ -2.34
VPS29-205ENST00000548539 IL5P05113 134 aa0.42□□□□□ -2.34
VPS29-205ENST00000548539 GNG2P59768 71 aa0.42□□□□□ -2.34
VPS29-205ENST00000548539 UBE2G1P62253 170 aa0.42□□□□□ -2.34
VPS29-205ENST00000548539 Q5BKY6 102 aa0.42□□□□□ -2.34
VPS29-205ENST00000548539 FAM74A4Q5TZK3 123 aa0.42□□□□□ -2.34
VPS29-205ENST00000548539 C10orf82Q8WW14 230 aa0.42□□□□□ -2.34
VPS29-205ENST00000548539 LSM10Q969L4 123 aaKnown RBP0.42□□□□□ -2.34
VPS29-205ENST00000548539 LINC00470Q9BZP3 86 aa0.42□□□□□ -2.34
VPS29-205ENST00000548539 TMEM242Q9NWH2 141 aa0.42□□□□□ -2.34
VPS29-205ENST00000548539 GNG8Q9UK08 70 aa0.42□□□□□ -2.34
VPS29-205ENST00000548539 PARP14Q460N5 1801 aa0.42□□□□□ -2.34
VPS29-205ENST00000548539 GPR98Q8WXG9 6306 aa0.42□□□□□ -2.34
VPS29-205ENST00000548539 ABCC10Q5T3U5 1492 aa0.41□□□□□ -2.34
VPS29-205ENST00000548539 MBD5Q9P267 1494 aa0.41□□□□□ -2.34
VPS29-205ENST00000548539 KNTC1P50748 2209 aa0.41□□□□□ -2.34
VPS29-205ENST00000548539 DOCK2Q92608 1830 aa0.41□□□□□ -2.34
VPS29-205ENST00000548539 APCP25054 2843 aa0.41□□□□□ -2.34
VPS29-205ENST00000548539 GVQW2A0A096LPI5 108 aaPredicted RBP0.41□□□□□ -2.34
VPS29-205ENST00000548539 TRBV7-1A0A0A6YYK4 115 aa0.41□□□□□ -2.34
VPS29-205ENST00000548539 PVALEFA0A1B0GWK0 134 aa0.41□□□□□ -2.34
Retrieved 100 of 20,778 RNA–protein pairs in 51.2 ms