RNA–Protein interactions for RNA: ENST00000546378.1

HOXC11-202, Transcript of homeobox C11, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXC11, Length 3,261 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11-202ENST00000546378 GATA3P23771 443 aa11.14□□□□□ -0.63
HOXC11-202ENST00000546378 EEF1AKMT3Q96AZ1 226 aa11.14□□□□□ -0.63
HOXC11-202ENST00000546378 ANKRD17O75179 2603 aaKnown RBP11.14□□□□□ -0.63
HOXC11-202ENST00000546378 C16orf54Q6UWD8 224 aa11.14□□□□□ -0.63
HOXC11-202ENST00000546378 NRACQ8N912 160 aa11.14□□□□□ -0.63
HOXC11-202ENST00000546378 RASL10AQ92737 203 aa11.14□□□□□ -0.63
HOXC11-202ENST00000546378 SS18L2Q9UHA2 77 aa11.14□□□□□ -0.63
HOXC11-202ENST00000546378 HELZ2Q9BYK8 2649 aaKnown RBP11.14□□□□□ -0.63
HOXC11-202ENST00000546378 LY6LH3BQJ8 138 aa11.13□□□□□ -0.63
HOXC11-202ENST00000546378 ZNF843Q8N446 348 aa11.13□□□□□ -0.63
HOXC11-202ENST00000546378 ATP6V0BQ99437 205 aa11.13□□□□□ -0.63
HOXC11-202ENST00000546378 IGHV7-4-1A0A0J9YVY3 117 aa11.13□□□□□ -0.63
HOXC11-202ENST00000546378 C10orf99Q6UWK7 81 aa11.13□□□□□ -0.63
HOXC11-202ENST00000546378 FAM159AQ6UWV7 190 aa11.13□□□□□ -0.63
HOXC11-202ENST00000546378 Q6ZSV7 163 aa11.13□□□□□ -0.63
HOXC11-202ENST00000546378 BAALCQ8WXS3 180 aa11.13□□□□□ -0.63
HOXC11-202ENST00000546378 PRSS47A8MTI9 375 aa11.13□□□□□ -0.63
HOXC11-202ENST00000546378 E9PLD3 99 aa11.13□□□□□ -0.63
HOXC11-202ENST00000546378 NFE4Q86UQ8 179 aa11.13□□□□□ -0.63
HOXC11-202ENST00000546378 ZNF575Q86XF7 245 aa11.13□□□□□ -0.63
HOXC11-202ENST00000546378 P0DMU3 169 aa11.12□□□□□ -0.63
HOXC11-202ENST00000546378 FAM231AP0DMU4 169 aa11.12□□□□□ -0.63
HOXC11-202ENST00000546378 FAM231CP0DMU5 169 aa11.12□□□□□ -0.63
HOXC11-202ENST00000546378 ATP5J2P56134 94 aa11.12□□□□□ -0.63
HOXC11-202ENST00000546378 IGHV3-38A0A0C4DH36 116 aa11.12□□□□□ -0.63
HOXC11-202ENST00000546378 CLPSL1A2RUU4 121 aa11.12□□□□□ -0.63
HOXC11-202ENST00000546378 LGALS3P17931 250 aaKnown RBP11.12□□□□□ -0.63
HOXC11-202ENST00000546378 PSMG4Q5JS54 123 aa11.12□□□□□ -0.63
HOXC11-202ENST00000546378 PLNP26678 52 aa11.11□□□□□ -0.63
HOXC11-202ENST00000546378 SPINK13Q1W4C9 94 aa11.11□□□□□ -0.63
HOXC11-202ENST00000546378 CCL19Q99731 98 aa11.11□□□□□ -0.63
HOXC11-202ENST00000546378 SIVA1O15304 175 aa11.11□□□□□ -0.63
HOXC11-202ENST00000546378 CRIP2P52943 208 aaPredicted RBP11.11□□□□□ -0.63
HOXC11-202ENST00000546378 C11orf71Q6IPW1 123 aa11.11□□□□□ -0.63
HOXC11-202ENST00000546378 C11orf44Q8N8P7 122 aa11.11□□□□□ -0.63
HOXC11-202ENST00000546378 PHLDA1Q8WV24 401 aaPredicted RBP11.11□□□□□ -0.63
HOXC11-202ENST00000546378 CRYBA4P53673 196 aa11.11□□□□□ -0.63
HOXC11-202ENST00000546378 DLX4Q92988 240 aaPredicted RBP11.11□□□□□ -0.63
HOXC11-202ENST00000546378 MUC4Q99102 2169 aa11.11□□□□□ -0.63
HOXC11-202ENST00000546378 IGKV3OR2-268A0A0C4DH90 116 aa11.1□□□□□ -0.63
HOXC11-202ENST00000546378 F8W1H4 67 aa11.1□□□□□ -0.63
HOXC11-202ENST00000546378 H3BUX3 64 aa11.1□□□□□ -0.63
HOXC11-202ENST00000546378 TSPAN13O95857 204 aa11.1□□□□□ -0.63
HOXC11-202ENST00000546378 RHPN1-AS1Q9BWJ2 59 aa11.1□□□□□ -0.63
HOXC11-202ENST00000546378 TEX15Q9BXT5 2789 aa11.1□□□□□ -0.63
HOXC11-202ENST00000546378 TRAV41A0A0B4J266 112 aa11.1□□□□□ -0.63
HOXC11-202ENST00000546378 IGHV3-16A0A0C4DH30 117 aa11.1□□□□□ -0.63
HOXC11-202ENST00000546378 RBAKDNA6NC62 111 aa11.1□□□□□ -0.63
HOXC11-202ENST00000546378 TCL1BO95988 128 aa11.1□□□□□ -0.63
HOXC11-202ENST00000546378 LINC01559Q495D7 138 aa11.1□□□□□ -0.63
HOXC11-202ENST00000546378 ZFAND3Q9H8U3 227 aa11.1□□□□□ -0.63
HOXC11-202ENST00000546378 SDHAF1A6NFY7 115 aa11.09□□□□□ -0.63
HOXC11-202ENST00000546378 MORN3Q6PF18 240 aaPredicted RBP11.09□□□□□ -0.63
HOXC11-202ENST00000546378 DPH3P1Q9H4G8 78 aa11.09□□□□□ -0.63
HOXC11-202ENST00000546378 XGP55808 180 aa11.09□□□□□ -0.63
HOXC11-202ENST00000546378 C8orf31Q8N9H6 132 aa11.09□□□□□ -0.63
HOXC11-202ENST00000546378 SLC50A1Q9BRV3 221 aa11.09□□□□□ -0.63
HOXC11-202ENST00000546378 TSPEAR-AS2P59090 65 aa11.08□□□□□ -0.64
HOXC11-202ENST00000546378 MDFICQ9P1T7 246 aa11.08□□□□□ -0.64
HOXC11-202ENST00000546378 HECTD1Q9ULT8 2610 aa11.08□□□□□ -0.64
HOXC11-202ENST00000546378 RS1O15537 224 aa11.08□□□□□ -0.64
HOXC11-202ENST00000546378 FOXI1Q12951 378 aa11.08□□□□□ -0.64
HOXC11-202ENST00000546378 TRAV8-3A0A0A6YYJ7 113 aa11.08□□□□□ -0.64
HOXC11-202ENST00000546378 TRAV21A0A0B4J279 112 aa11.08□□□□□ -0.64
HOXC11-202ENST00000546378 B5MCH6 92 aa11.08□□□□□ -0.64
HOXC11-202ENST00000546378 PROK1P58294 105 aa11.08□□□□□ -0.64
HOXC11-202ENST00000546378 ORMDL2Q53FV1 153 aa11.08□□□□□ -0.64
HOXC11-202ENST00000546378 HIST2H2BCQ6DN03 193 aa11.08□□□□□ -0.64
HOXC11-202ENST00000546378 OR11H6Q8NGC7 330 aa11.08□□□□□ -0.64
HOXC11-202ENST00000546378 RNF183Q96D59 192 aa11.08□□□□□ -0.64
HOXC11-202ENST00000546378 NPBQ8NG41 125 aa11.07□□□□□ -0.64
HOXC11-202ENST00000546378 ANAPC13Q9BS18 74 aa11.07□□□□□ -0.64
HOXC11-202ENST00000546378 TM2D2Q9BX73 214 aa11.07□□□□□ -0.64
HOXC11-202ENST00000546378 MXRA5Q9NR99 2828 aa11.07□□□□□ -0.64
HOXC11-202ENST00000546378 HERVK_113P61574 105 aa11.07□□□□□ -0.64
HOXC11-202ENST00000546378 A0A0J9YXV3 536 aa11.06□□□□□ -0.64
HOXC11-202ENST00000546378 TMEM238LA0A1B0GVL6 79 aa11.06□□□□□ -0.64
HOXC11-202ENST00000546378 A4D1N5 150 aa11.06□□□□□ -0.64
HOXC11-202ENST00000546378 A6NJY4 79 aa11.06□□□□□ -0.64
HOXC11-202ENST00000546378 COX6B1P14854 86 aa11.06□□□□□ -0.64
HOXC11-202ENST00000546378 ZNF876PQ49A33 203 aa11.06□□□□□ -0.64
HOXC11-202ENST00000546378 IGLV2-18A0A075B6J9 118 aa11.06□□□□□ -0.64
HOXC11-202ENST00000546378 IGHV4-38-2P0DP08 117 aa11.06□□□□□ -0.64
HOXC11-202ENST00000546378 ANKRD29Q8N6D5 301 aa11.06□□□□□ -0.64
HOXC11-202ENST00000546378 FHL3Q13643 280 aa11.06□□□□□ -0.64
HOXC11-202ENST00000546378 SMPXQ9UHP9 88 aa11.06□□□□□ -0.64
HOXC11-202ENST00000546378 A8MWV9 139 aa11.05□□□□□ -0.64
HOXC11-202ENST00000546378 SMCPP49901 116 aaPredicted RBP11.05□□□□□ -0.64
HOXC11-202ENST00000546378 NTN5Q8WTR8 489 aaPredicted RBP11.05□□□□□ -0.64
HOXC11-202ENST00000546378 GCN1Q92616 2671 aaKnown RBP11.05□□□□□ -0.64
HOXC11-202ENST00000546378 NPFFO15130 113 aa11.04□□□□□ -0.64
HOXC11-202ENST00000546378 FAM110DQ8TAY7 271 aaPredicted RBP11.04□□□□□ -0.64
HOXC11-202ENST00000546378 RNF5Q99942 180 aa11.04□□□□□ -0.64
HOXC11-202ENST00000546378 TRBV7-3A0A075B6L6 115 aa11.04□□□□□ -0.64
HOXC11-202ENST00000546378 SYNJ2BPP57105 145 aa11.04□□□□□ -0.64
HOXC11-202ENST00000546378 SUMO4Q6EEV6 95 aa11.04□□□□□ -0.64
HOXC11-202ENST00000546378 Q9UF83 564 aa11.04□□□□□ -0.64
HOXC11-202ENST00000546378 DEFB136Q30KP8 78 aa11.03□□□□□ -0.64
HOXC11-202ENST00000546378 HIGD1BQ9P298 99 aa11.03□□□□□ -0.64
HOXC11-202ENST00000546378 TTC32Q5I0X7 151 aa11.03□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 53.9 ms