RNA–Protein interactions for RNA: ENST00000545694.1

SYNE1-239, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 3

Gene SYNE1, Length 526 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-239ENST00000545694 TRAV12-3A0A0B4J271 114 aa4.57□□□□□ -1.68
SYNE1-239ENST00000545694 IGHV3-16A0A0C4DH30 117 aa4.57□□□□□ -1.68
SYNE1-239ENST00000545694 IGHV1-24A0A0C4DH33 117 aa4.57□□□□□ -1.68
SYNE1-239ENST00000545694 TCAPO15273 167 aa4.57□□□□□ -1.68
SYNE1-239ENST00000545694 TNFRSF6BO95407 300 aa4.57□□□□□ -1.68
SYNE1-239ENST00000545694 INSP01308 110 aa4.57□□□□□ -1.68
SYNE1-239ENST00000545694 IGLV1-51P01701 117 aa4.57□□□□□ -1.68
SYNE1-239ENST00000545694 HBDP02042 147 aa4.57□□□□□ -1.68
SYNE1-239ENST00000545694 CD7P09564 240 aa4.57□□□□□ -1.68
SYNE1-239ENST00000545694 RNASE3P12724 160 aaKnown RBP4.57□□□□□ -1.68
SYNE1-239ENST00000545694 FHL2Q14192 279 aa4.57□□□□□ -1.68
SYNE1-239ENST00000545694 TEX43Q6ZNM6 134 aa4.57□□□□□ -1.68
SYNE1-239ENST00000545694 Q8N8P6 123 aa4.57□□□□□ -1.68
SYNE1-239ENST00000545694 URB1-AS1Q96HZ7 61 aa4.57□□□□□ -1.68
SYNE1-239ENST00000545694 SPXQ9BT56 116 aa4.57□□□□□ -1.68
SYNE1-239ENST00000545694 ATRQ13535 2644 aa4.57□□□□□ -1.68
SYNE1-239ENST00000545694 NIPBLQ6KC79 2804 aaeCLIP4.56□□□□□ -1.68
SYNE1-239ENST00000545694 INAFM1C9JVW0 142 aa4.56□□□□□ -1.68
SYNE1-239ENST00000545694 C3orf79P0CE67 100 aa4.56□□□□□ -1.68
SYNE1-239ENST00000545694 EVI2AP22794 236 aa4.56□□□□□ -1.68
SYNE1-239ENST00000545694 KRTDAPP60985 99 aa4.56□□□□□ -1.68
SYNE1-239ENST00000545694 BEAN1Q3B7T3 259 aa4.56□□□□□ -1.68
SYNE1-239ENST00000545694 MUC21Q5SSG8 566 aa4.56□□□□□ -1.68
SYNE1-239ENST00000545694 MORN3Q6PF18 240 aaPredicted RBP4.56□□□□□ -1.68
SYNE1-239ENST00000545694 MRPL52Q86TS9 123 aaKnown RBP4.56□□□□□ -1.68
SYNE1-239ENST00000545694 STHQ8IWL8 128 aa4.56□□□□□ -1.68
SYNE1-239ENST00000545694 MCRIP2Q9BUT9 160 aaKnown RBP4.56□□□□□ -1.68
SYNE1-239ENST00000545694 VAMP8Q9BV40 100 aa4.56□□□□□ -1.68
SYNE1-239ENST00000545694 C1QTNF4Q9BXJ3 329 aa4.56□□□□□ -1.68
SYNE1-239ENST00000545694 EDA2RQ9HAV5 297 aa4.56□□□□□ -1.68
SYNE1-239ENST00000545694 MSRB1Q9NZV6 116 aa4.56□□□□□ -1.68
SYNE1-239ENST00000545694 KIR2DL5BA0A0G2JN68 375 aa4.55□□□□□ -1.68
SYNE1-239ENST00000545694 KIR2DL5BA0A0G2JPC4 375 aa4.55□□□□□ -1.68
SYNE1-239ENST00000545694 A0A1W2PRX2 142 aa4.55□□□□□ -1.68
SYNE1-239ENST00000545694 A8MWV9 139 aa4.55□□□□□ -1.68
SYNE1-239ENST00000545694 SYS1-DBNDD2H3BUS1 97 aa4.55□□□□□ -1.68
SYNE1-239ENST00000545694 H7C1H1 209 aa4.55□□□□□ -1.68
SYNE1-239ENST00000545694 J3KRW8 73 aa4.55□□□□□ -1.68
SYNE1-239ENST00000545694 GNRH2O43555 120 aa4.55□□□□□ -1.68
SYNE1-239ENST00000545694 CIDEAO60543 219 aa4.55□□□□□ -1.68
SYNE1-239ENST00000545694 SAP30O75446 220 aa4.55□□□□□ -1.68
SYNE1-239ENST00000545694 ATP5LO75964 103 aa4.55□□□□□ -1.68
SYNE1-239ENST00000545694 NPYP01303 97 aa4.55□□□□□ -1.68
SYNE1-239ENST00000545694 PRB4P10163 310 aaPredicted RBP4.55□□□□□ -1.68
SYNE1-239ENST00000545694 FCER1GP30273 86 aa4.55□□□□□ -1.68
SYNE1-239ENST00000545694 IFI27P40305 119 aaPredicted RBP4.55□□□□□ -1.68
SYNE1-239ENST00000545694 DEFB1P60022 68 aa4.55□□□□□ -1.68
SYNE1-239ENST00000545694 ZNF415Q09FC8 603 aa4.55□□□□□ -1.68
SYNE1-239ENST00000545694 SPINK13Q1W4C9 94 aa4.55□□□□□ -1.68
SYNE1-239ENST00000545694 ORMDL2Q53FV1 153 aa4.55□□□□□ -1.68
SYNE1-239ENST00000545694 KIR2DL5AQ8N109 375 aa4.55□□□□□ -1.68
SYNE1-239ENST00000545694 FAM19A2Q8N3H0 131 aa4.55□□□□□ -1.68
SYNE1-239ENST00000545694 NRACQ8N912 160 aa4.55□□□□□ -1.68
SYNE1-239ENST00000545694 DUX3Q96PT4 197 aa4.55□□□□□ -1.68
SYNE1-239ENST00000545694 SMR3AQ99954 134 aa4.55□□□□□ -1.68
SYNE1-239ENST00000545694 CDIP1Q9H305 208 aa4.55□□□□□ -1.68
SYNE1-239ENST00000545694 MUC21A0A0G2JKD1 596 aa4.54□□□□□ -1.68
SYNE1-239ENST00000545694 TRBV6-5A0A0K0K1A5 114 aa4.54□□□□□ -1.68
SYNE1-239ENST00000545694 MUC21A0A140T8X8 626 aa4.54□□□□□ -1.68
SYNE1-239ENST00000545694 CBY3A6NI87 242 aa4.54□□□□□ -1.68
SYNE1-239ENST00000545694 PCP4L1A6NKN8 68 aa4.54□□□□□ -1.68
SYNE1-239ENST00000545694 KNCNA6PVL3 124 aa4.54□□□□□ -1.68
SYNE1-239ENST00000545694 HSBP1L1C9JCN9 74 aa4.54□□□□□ -1.68
SYNE1-239ENST00000545694 M0R2P5 195 aa4.54□□□□□ -1.68
SYNE1-239ENST00000545694 RHODO00212 210 aa4.54□□□□□ -1.68
SYNE1-239ENST00000545694 SUMO2P61956 95 aaKnown RBP4.54□□□□□ -1.68
SYNE1-239ENST00000545694 LAGE3Q14657 143 aa4.54□□□□□ -1.68
SYNE1-239ENST00000545694 NSUN5P1Q3KNT7 163 aa4.54□□□□□ -1.68
SYNE1-239ENST00000545694 ODF3L2Q3SX64 289 aa4.54□□□□□ -1.68
SYNE1-239ENST00000545694 LBHQ53QV2 105 aaPredicted RBP4.54□□□□□ -1.68
SYNE1-239ENST00000545694 C9orf66Q5T8R8 295 aa4.54□□□□□ -1.68
SYNE1-239ENST00000545694 TRPT1Q86TN4 253 aaKnown RBP4.54□□□□□ -1.68
SYNE1-239ENST00000545694 ZNF664Q8N3J9 261 aa4.54□□□□□ -1.68
SYNE1-239ENST00000545694 C14orf178Q8N769 122 aaPredicted RBP4.54□□□□□ -1.68
SYNE1-239ENST00000545694 SMIM2Q9BVW6 85 aa4.54□□□□□ -1.68
SYNE1-239ENST00000545694 KIF25-AS1Q9Y6Z4 181 aa4.54□□□□□ -1.68
SYNE1-239ENST00000545694 BAHCC1Q9P281 2608 aa4.53□□□□□ -1.68
SYNE1-239ENST00000545694 IGLV2-18A0A075B6J9 118 aa4.53□□□□□ -1.68
SYNE1-239ENST00000545694 TRAV12-2A0A075B6T6 113 aa4.53□□□□□ -1.68
SYNE1-239ENST00000545694 TRAV9-2A0A087WT02 112 aa4.53□□□□□ -1.68
SYNE1-239ENST00000545694 LOC389332A0A1B0GUA5 103 aa4.53□□□□□ -1.68
SYNE1-239ENST00000545694 VCYO14598 125 aa4.53□□□□□ -1.68
SYNE1-239ENST00000545694 IGKV3-20P01619 116 aa4.53□□□□□ -1.68
SYNE1-239ENST00000545694 DDTP30046 118 aa4.53□□□□□ -1.68
SYNE1-239ENST00000545694 SSTP61278 116 aa4.53□□□□□ -1.68
SYNE1-239ENST00000545694 LGALS9BQ3B8N2 356 aa4.53□□□□□ -1.68
SYNE1-239ENST00000545694 ZNF876PQ49A33 203 aa4.53□□□□□ -1.68
SYNE1-239ENST00000545694 LINC01545Q5VT33 79 aa4.53□□□□□ -1.68
SYNE1-239ENST00000545694 LGALS9CQ6DKI2 356 aa4.53□□□□□ -1.68
SYNE1-239ENST00000545694 ZFP2Q6ZN57 461 aa4.53□□□□□ -1.68
SYNE1-239ENST00000545694 Q6ZQT7 251 aa4.53□□□□□ -1.68
SYNE1-239ENST00000545694 C11orf44Q8N8P7 122 aa4.53□□□□□ -1.68
SYNE1-239ENST00000545694 Q8N976 141 aa4.53□□□□□ -1.68
SYNE1-239ENST00000545694 LINC01587Q99440 93 aa4.53□□□□□ -1.68
SYNE1-239ENST00000545694 CITED1Q99966 193 aa4.53□□□□□ -1.68
SYNE1-239ENST00000545694 ST20Q9HBF5 79 aa4.53□□□□□ -1.68
SYNE1-239ENST00000545694 GOLT1BQ9Y3E0 138 aa4.53□□□□□ -1.68
SYNE1-239ENST00000545694 TIMM8BQ9Y5J9 83 aaPredicted RBP4.53□□□□□ -1.68
SYNE1-239ENST00000545694 NACAE9PAV3 2078 aa4.53□□□□□ -1.68
SYNE1-239ENST00000545694 RBMY1BA6NDE4 496 aaKnown RBP4.52□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms