RNA–Protein interactions for RNA: ENST00000545686.6

TDP1-204, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

TSL 1 (best)

Gene TDP1, Length 2,488 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-204ENST00000545686 DEFB1P60022 68 aa6.55□□□□□ -1.36
TDP1-204ENST00000545686 RPL11P62913 178 aaKnown RBP6.55□□□□□ -1.36
TDP1-204ENST00000545686 RHOHQ15669 191 aa6.55□□□□□ -1.36
TDP1-204ENST00000545686 NSUN5P1Q3KNT7 163 aa6.55□□□□□ -1.36
TDP1-204ENST00000545686 CLEC2AQ6UVW9 174 aa6.55□□□□□ -1.36
TDP1-204ENST00000545686 AMELXQ99217 191 aa6.55□□□□□ -1.36
TDP1-204ENST00000545686 RHPN1-AS1Q9BWJ2 59 aa6.55□□□□□ -1.36
TDP1-204ENST00000545686 SPTA1P02549 2419 aa6.55□□□□□ -1.36
TDP1-204ENST00000545686 SDHAF1A6NFY7 115 aa6.55□□□□□ -1.36
TDP1-204ENST00000545686 CFC1BP0CG36 223 aa6.55□□□□□ -1.36
TDP1-204ENST00000545686 CFC1P0CG37 223 aa6.55□□□□□ -1.36
TDP1-204ENST00000545686 CRYBA4P53673 196 aa6.55□□□□□ -1.36
TDP1-204ENST00000545686 TSPEAR-AS2P59090 65 aa6.55□□□□□ -1.36
TDP1-204ENST00000545686 CKS1BP61024 79 aa6.55□□□□□ -1.36
TDP1-204ENST00000545686 ZNF418Q8TF45 676 aaPredicted RBP6.55□□□□□ -1.36
TDP1-204ENST00000545686 PRO1854Q9UHT4 67 aa6.55□□□□□ -1.36
TDP1-204ENST00000545686 LINC00527Q9UJ94 153 aa6.55□□□□□ -1.36
TDP1-204ENST00000545686 SPTBN1Q01082 2364 aaKnown RBP6.54□□□□□ -1.36
TDP1-204ENST00000545686 A8MWV9 139 aa6.54□□□□□ -1.36
TDP1-204ENST00000545686 J3QQQ9 107 aa6.54□□□□□ -1.36
TDP1-204ENST00000545686 K7EMT4 169 aa6.54□□□□□ -1.36
TDP1-204ENST00000545686 TCL1BO95988 128 aa6.54□□□□□ -1.36
TDP1-204ENST00000545686 LGALS3P17931 250 aaKnown RBP6.54□□□□□ -1.36
TDP1-204ENST00000545686 C9orf85Q96MD7 179 aa6.54□□□□□ -1.36
TDP1-204ENST00000545686 LEPROTO15243 131 aa6.54□□□□□ -1.36
TDP1-204ENST00000545686 RPL39P62891 51 aaKnown RBP6.54□□□□□ -1.36
TDP1-204ENST00000545686 TMEM170BQ5T4T1 132 aa6.54□□□□□ -1.36
TDP1-204ENST00000545686 ZNRF2Q8NHG8 242 aa6.54□□□□□ -1.36
TDP1-204ENST00000545686 A0A0J9YX75 114 aa6.53□□□□□ -1.36
TDP1-204ENST00000545686 IGLV1-40P01703 118 aa6.53□□□□□ -1.36
TDP1-204ENST00000545686 Q6ZS46 218 aa6.53□□□□□ -1.36
TDP1-204ENST00000545686 A0A0B4J2C4 111 aa6.53□□□□□ -1.36
TDP1-204ENST00000545686 A6NDX4 124 aa6.53□□□□□ -1.36
TDP1-204ENST00000545686 F5H697 171 aa6.53□□□□□ -1.36
TDP1-204ENST00000545686 EMP1P54849 157 aa6.53□□□□□ -1.36
TDP1-204ENST00000545686 Q6ZUT4 128 aa6.53□□□□□ -1.36
TDP1-204ENST00000545686 CARD19Q96LW7 228 aa6.53□□□□□ -1.36
TDP1-204ENST00000545686 ZNF580Q9UK33 172 aa6.53□□□□□ -1.36
TDP1-204ENST00000545686 CEP295Q9C0D2 2601 aa6.53□□□□□ -1.36
TDP1-204ENST00000545686 IGHV3-16A0A0C4DH30 117 aa6.52□□□□□ -1.37
TDP1-204ENST00000545686 TMEM223A0PJW6 202 aa6.52□□□□□ -1.37
TDP1-204ENST00000545686 IGHV3-11P01762 117 aa6.52□□□□□ -1.37
TDP1-204ENST00000545686 SPINK8P0C7L1 97 aa6.52□□□□□ -1.37
TDP1-204ENST00000545686 PF4V1P10720 104 aa6.52□□□□□ -1.37
TDP1-204ENST00000545686 TRPT1Q86TN4 253 aaKnown RBP6.52□□□□□ -1.37
TDP1-204ENST00000545686 DCANP1Q8TF63 244 aa6.52□□□□□ -1.37
TDP1-204ENST00000545686 MDFICQ9P1T7 246 aa6.52□□□□□ -1.37
TDP1-204ENST00000545686 HIVEP3Q5T1R4 2406 aa6.52□□□□□ -1.37
TDP1-204ENST00000545686 MUC6Q6W4X9 2439 aa6.52□□□□□ -1.37
TDP1-204ENST00000545686 A0A087WWL8 130 aa6.52□□□□□ -1.37
TDP1-204ENST00000545686 TMEM262E9PQX1 116 aa6.52□□□□□ -1.37
TDP1-204ENST00000545686 M0QY20 66 aa6.52□□□□□ -1.37
TDP1-204ENST00000545686 ZNF688P0C7X2 276 aa6.52□□□□□ -1.37
TDP1-204ENST00000545686 P0DMU3 169 aa6.52□□□□□ -1.37
TDP1-204ENST00000545686 FAM231AP0DMU4 169 aa6.52□□□□□ -1.37
TDP1-204ENST00000545686 FAM231CP0DMU5 169 aa6.52□□□□□ -1.37
TDP1-204ENST00000545686 FHL3Q13643 280 aa6.52□□□□□ -1.37
TDP1-204ENST00000545686 JPT2Q9H910 190 aa6.52□□□□□ -1.37
TDP1-204ENST00000545686 CFHR3Q02985 330 aa6.51□□□□□ -1.37
TDP1-204ENST00000545686 SFTA2Q6UW10 78 aa6.51□□□□□ -1.37
TDP1-204ENST00000545686 LINC01600Q96MT4 127 aa6.51□□□□□ -1.37
TDP1-204ENST00000545686 ASH1LQ9NR48 2969 aaKnown RBP6.51□□□□□ -1.37
TDP1-204ENST00000545686 IGKV3-7A0A075B6H7 116 aa6.51□□□□□ -1.37
TDP1-204ENST00000545686 TRAV16A0A0A6YYK6 109 aaPredicted RBP6.51□□□□□ -1.37
TDP1-204ENST00000545686 TRAV12-3A0A0B4J271 114 aa6.51□□□□□ -1.37
TDP1-204ENST00000545686 XGP55808 180 aa6.51□□□□□ -1.37
TDP1-204ENST00000545686 BRD3OSQ6XYD6 125 aa6.51□□□□□ -1.37
TDP1-204ENST00000545686 ANKRD29Q8N6D5 301 aa6.51□□□□□ -1.37
TDP1-204ENST00000545686 C20orf203Q8NBC4 194 aa6.51□□□□□ -1.37
TDP1-204ENST00000545686 PTH2Q96A98 100 aa6.51□□□□□ -1.37
TDP1-204ENST00000545686 GEMIN7Q9H840 131 aaKnown RBP6.51□□□□□ -1.37
TDP1-204ENST00000545686 COL6A6A6NMZ7 2263 aa6.5□□□□□ -1.37
TDP1-204ENST00000545686 IGHV3OR16-10A0A075B7F0 116 aa6.5□□□□□ -1.37
TDP1-204ENST00000545686 IGHV3-33P01772 117 aa6.5□□□□□ -1.37
TDP1-204ENST00000545686 MT-ATP8P03928 68 aa6.5□□□□□ -1.37
TDP1-204ENST00000545686 SCGB1C2P0DMR2 95 aa6.5□□□□□ -1.37
TDP1-204ENST00000545686 ZNF56Q15929 161 aa6.5□□□□□ -1.37
TDP1-204ENST00000545686 TMEM263Q8WUH6 116 aaKnown RBP6.5□□□□□ -1.37
TDP1-204ENST00000545686 ZNF256Q9Y2P7 627 aaPredicted RBP6.5□□□□□ -1.37
TDP1-204ENST00000545686 NBASA2RRP1 2371 aa6.5□□□□□ -1.37
TDP1-204ENST00000545686 A4D1N5 150 aa6.5□□□□□ -1.37
TDP1-204ENST00000545686 H3BUX3 64 aa6.5□□□□□ -1.37
TDP1-204ENST00000545686 RHODO00212 210 aa6.5□□□□□ -1.37
TDP1-204ENST00000545686 SLC25A20O43772 301 aa6.5□□□□□ -1.37
TDP1-204ENST00000545686 ZNF22P17026 224 aaPredicted RBP6.5□□□□□ -1.37
TDP1-204ENST00000545686 EDA2RQ9HAV5 297 aa6.5□□□□□ -1.37
TDP1-204ENST00000545686 RELNP78509 3460 aa6.49□□□□□ -1.37
TDP1-204ENST00000545686 I3L3M4 83 aa6.49□□□□□ -1.37
TDP1-204ENST00000545686 IGHV4-39P01824 125 aa6.49□□□□□ -1.37
TDP1-204ENST00000545686 LY6EQ16553 131 aa6.49□□□□□ -1.37
TDP1-204ENST00000545686 FAM74A4Q5TZK3 123 aa6.49□□□□□ -1.37
TDP1-204ENST00000545686 RNF152Q8N8N0 203 aa6.49□□□□□ -1.37
TDP1-204ENST00000545686 PIMREGQ9BSJ6 248 aa6.49□□□□□ -1.37
TDP1-204ENST00000545686 ERG28Q9UKR5 140 aa6.49□□□□□ -1.37
TDP1-204ENST00000545686 IGHV1OR15-1A0A075B7D0 117 aa6.49□□□□□ -1.37
TDP1-204ENST00000545686 SNRPD3P62318 126 aaKnown RBP6.49□□□□□ -1.37
TDP1-204ENST00000545686 M0R2P5 195 aa6.48□□□□□ -1.37
TDP1-204ENST00000545686 IGHV4-38-2P0DP08 117 aa6.48□□□□□ -1.37
TDP1-204ENST00000545686 SRD5A1P18405 259 aa6.48□□□□□ -1.37
TDP1-204ENST00000545686 PRRC2AP48634 2157 aaKnown RBP6.48□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms