RNA–Protein interactions for RNA: ENST00000543995.5

TNFRSF1A-216, Transcript of TNF receptor superfamily member 1A, humanhuman

TSL 5

Gene TNFRSF1A, Length 1,531 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF1A-216ENST00000543995 AP1S3Q96PC3 154 aa10.16□□□□□ -0.78
TNFRSF1A-216ENST00000543995 MSRB1Q9NZV6 116 aa10.16□□□□□ -0.78
TNFRSF1A-216ENST00000543995 CARHSP1Q9Y2V2 147 aaKnown RBP10.16□□□□□ -0.78
TNFRSF1A-216ENST00000543995 RHODO00212 210 aa10.15□□□□□ -0.78
TNFRSF1A-216ENST00000543995 PAX4O43316 350 aa10.15□□□□□ -0.78
TNFRSF1A-216ENST00000543995 CRYBA4P53673 196 aa10.15□□□□□ -0.78
TNFRSF1A-216ENST00000543995 WDR73Q6P4I2 378 aa10.15□□□□□ -0.78
TNFRSF1A-216ENST00000543995 ZFP2Q6ZN57 461 aa10.15□□□□□ -0.78
TNFRSF1A-216ENST00000543995 C14orf178Q8N769 122 aaPredicted RBP10.15□□□□□ -0.78
TNFRSF1A-216ENST00000543995 NAT8BQ9UHF3 227 aa10.15□□□□□ -0.78
TNFRSF1A-216ENST00000543995 NUDT3O95989 172 aa10.14□□□□□ -0.79
TNFRSF1A-216ENST00000543995 CRYGDP07320 174 aa10.14□□□□□ -0.79
TNFRSF1A-216ENST00000543995 TRGC1P0CF51 173 aa10.14□□□□□ -0.79
TNFRSF1A-216ENST00000543995 C15orf53Q8NAA6 179 aa10.14□□□□□ -0.79
TNFRSF1A-216ENST00000543995 CNFNQ9BYD5 112 aa10.14□□□□□ -0.79
TNFRSF1A-216ENST00000543995 APLNQ9ULZ1 77 aa10.14□□□□□ -0.79
TNFRSF1A-216ENST00000543995 STARD9Q9P2P6 4700 aa10.13□□□□□ -0.79
TNFRSF1A-216ENST00000543995 CSMD3Q7Z407 3707 aa10.13□□□□□ -0.79
TNFRSF1A-216ENST00000543995 SMIM27A0A1W2PRY6 76 aa10.13□□□□□ -0.79
TNFRSF1A-216ENST00000543995 APOC3P02656 99 aa10.13□□□□□ -0.79
TNFRSF1A-216ENST00000543995 GATA1P15976 413 aaPredicted RBP10.13□□□□□ -0.79
TNFRSF1A-216ENST00000543995 ZNF56Q15929 161 aa10.13□□□□□ -0.79
TNFRSF1A-216ENST00000543995 UFSP1Q6NVU6 142 aa10.13□□□□□ -0.79
TNFRSF1A-216ENST00000543995 NUP35Q8NFH5 326 aa10.13□□□□□ -0.79
TNFRSF1A-216ENST00000543995 VSIG2Q96IQ7 327 aa10.13□□□□□ -0.79
TNFRSF1A-216ENST00000543995 A0A1B0GUT8 65 aa10.12□□□□□ -0.79
TNFRSF1A-216ENST00000543995 H3BNG1 76 aa10.12□□□□□ -0.79
TNFRSF1A-216ENST00000543995 SMIM15Q7Z3B0 74 aa10.12□□□□□ -0.79
TNFRSF1A-216ENST00000543995 SLC25A29Q8N8R3 303 aa10.12□□□□□ -0.79
TNFRSF1A-216ENST00000543995 TRBV6-4A0A1B0GX49 114 aa10.12□□□□□ -0.79
TNFRSF1A-216ENST00000543995 F5H697 171 aa10.12□□□□□ -0.79
TNFRSF1A-216ENST00000543995 MGPP08493 103 aa10.12□□□□□ -0.79
TNFRSF1A-216ENST00000543995 EVI2AP22794 236 aa10.12□□□□□ -0.79
TNFRSF1A-216ENST00000543995 RHOHQ15669 191 aa10.12□□□□□ -0.79
TNFRSF1A-216ENST00000543995 PRADC1Q9BSG0 188 aa10.12□□□□□ -0.79
TNFRSF1A-216ENST00000543995 GYPEP15421 78 aa10.11□□□□□ -0.79
TNFRSF1A-216ENST00000543995 RIGQ13278 110 aa10.11□□□□□ -0.79
TNFRSF1A-216ENST00000543995 Q6ZSN1 163 aa10.11□□□□□ -0.79
TNFRSF1A-216ENST00000543995 DPH3P1Q9H4G8 78 aa10.11□□□□□ -0.79
TNFRSF1A-216ENST00000543995 ICOSQ9Y6W8 199 aa10.11□□□□□ -0.79
TNFRSF1A-216ENST00000543995 K7EQD1 137 aa10.1□□□□□ -0.79
TNFRSF1A-216ENST00000543995 ATP6V1G1O75348 118 aa10.1□□□□□ -0.79
TNFRSF1A-216ENST00000543995 RAB4BP61018 213 aa10.1□□□□□ -0.79
TNFRSF1A-216ENST00000543995 CLRN3Q8NCR9 226 aa10.1□□□□□ -0.79
TNFRSF1A-216ENST00000543995 CTDSP1Q9GZU7 261 aa10.1□□□□□ -0.79
TNFRSF1A-216ENST00000543995 KIF25-AS1Q9Y6Z4 181 aa10.1□□□□□ -0.79
TNFRSF1A-216ENST00000543995 DYNC2H1Q8NCM8 4307 aaKnown RBP10.09□□□□□ -0.79
TNFRSF1A-216ENST00000543995 LOC100131303A0A0U1RQF7 123 aa10.09□□□□□ -0.79
TNFRSF1A-216ENST00000543995 SVBPQ8N300 66 aa10.09□□□□□ -0.79
TNFRSF1A-216ENST00000543995 RPS10P5Q9NQ39 176 aa10.09□□□□□ -0.79
TNFRSF1A-216ENST00000543995 C7orf77A4D0Y5 90 aa10.08□□□□□ -0.8
TNFRSF1A-216ENST00000543995 SNAPINO95295 136 aa10.08□□□□□ -0.8
TNFRSF1A-216ENST00000543995 FAM3BP58499 235 aaPredicted RBP10.08□□□□□ -0.8
TNFRSF1A-216ENST00000543995 RHEBQ15382 184 aa10.08□□□□□ -0.8
TNFRSF1A-216ENST00000543995 MRPL23Q16540 153 aaKnown RBP10.08□□□□□ -0.8
TNFRSF1A-216ENST00000543995 A0A096LPF7 62 aa10.07□□□□□ -0.8
TNFRSF1A-216ENST00000543995 SRIP30626 198 aa10.07□□□□□ -0.8
TNFRSF1A-216ENST00000543995 MRPL54Q6P161 138 aaKnown RBP10.07□□□□□ -0.8
TNFRSF1A-216ENST00000543995 P0DMU3 169 aa10.07□□□□□ -0.8
TNFRSF1A-216ENST00000543995 FAM231AP0DMU4 169 aa10.07□□□□□ -0.8
TNFRSF1A-216ENST00000543995 FAM231CP0DMU5 169 aa10.07□□□□□ -0.8
TNFRSF1A-216ENST00000543995 S100A1P23297 94 aa10.07□□□□□ -0.8
TNFRSF1A-216ENST00000543995 CAMPP49913 170 aa10.07□□□□□ -0.8
TNFRSF1A-216ENST00000543995 LINC00315P59091 139 aa10.07□□□□□ -0.8
TNFRSF1A-216ENST00000543995 KCNIP4Q6PIL6 250 aa10.07□□□□□ -0.8
TNFRSF1A-216ENST00000543995 ATRAIDQ6UW56 229 aa10.07□□□□□ -0.8
TNFRSF1A-216ENST00000543995 UBE2DNLQ8IWF7 75 aa10.07□□□□□ -0.8
TNFRSF1A-216ENST00000543995 IMMP2LQ96T52 175 aa10.07□□□□□ -0.8
TNFRSF1A-216ENST00000543995 A0A087WWC5 75 aa10.06□□□□□ -0.8
TNFRSF1A-216ENST00000543995 GAGE12JA6NER3 117 aa10.06□□□□□ -0.8
TNFRSF1A-216ENST00000543995 GAGE1Q13065 139 aa10.06□□□□□ -0.8
TNFRSF1A-216ENST00000543995 GAGE4Q13068 117 aa10.06□□□□□ -0.8
TNFRSF1A-216ENST00000543995 GAGE5Q13069 117 aa10.06□□□□□ -0.8
TNFRSF1A-216ENST00000543995 GAGE13Q4V321 117 aa10.06□□□□□ -0.8
TNFRSF1A-216ENST00000543995 TMEM191AQ9H0A3 160 aa10.06□□□□□ -0.8
TNFRSF1A-216ENST00000543995 A0A1B0GW15 77 aa10.05□□□□□ -0.8
TNFRSF1A-216ENST00000543995 H7C1H1 209 aa10.05□□□□□ -0.8
TNFRSF1A-216ENST00000543995 LY6G6CO95867 125 aa10.05□□□□□ -0.8
TNFRSF1A-216ENST00000543995 S100A8P05109 93 aa10.05□□□□□ -0.8
TNFRSF1A-216ENST00000543995 S100PP25815 95 aa10.05□□□□□ -0.8
TNFRSF1A-216ENST00000543995 CCL18P55774 89 aa10.05□□□□□ -0.8
TNFRSF1A-216ENST00000543995 HBBP68871 147 aa10.05□□□□□ -0.8
TNFRSF1A-216ENST00000543995 SUMO4Q6EEV6 95 aa10.05□□□□□ -0.8
TNFRSF1A-216ENST00000543995 NEGR1Q7Z3B1 354 aa10.05□□□□□ -0.8
TNFRSF1A-216ENST00000543995 TMEM242Q9NWH2 141 aa10.05□□□□□ -0.8
TNFRSF1A-216ENST00000543995 TRBV10-1A0A0K0K1A3 114 aa10.04□□□□□ -0.8
TNFRSF1A-216ENST00000543995 LGALS9CQ6DKI2 356 aa10.04□□□□□ -0.8
TNFRSF1A-216ENST00000543995 SH2D6Q7Z4S9 175 aa10.04□□□□□ -0.8
TNFRSF1A-216ENST00000543995 ATP5L2Q7Z4Y8 100 aa10.04□□□□□ -0.8
TNFRSF1A-216ENST00000543995 ZNRF2Q8NHG8 242 aa10.04□□□□□ -0.8
TNFRSF1A-216ENST00000543995 LINC00476Q8WZB0 136 aa10.04□□□□□ -0.8
TNFRSF1A-216ENST00000543995 BTF3L4Q96K17 158 aa10.04□□□□□ -0.8
TNFRSF1A-216ENST00000543995 Q9UF83 564 aa10.04□□□□□ -0.8
TNFRSF1A-216ENST00000543995 URGCP-MRPS24S4R325 110 aa10.04□□□□□ -0.8
TNFRSF1A-216ENST00000543995 TRAV26-2A0A0B4J265 109 aa10.03□□□□□ -0.8
TNFRSF1A-216ENST00000543995 RPL36AP83881 106 aaKnown RBP10.03□□□□□ -0.8
TNFRSF1A-216ENST00000543995 PLECQ15149 4684 aaKnown RBP10.03□□□□□ -0.8
TNFRSF1A-216ENST00000543995 RPL36ALQ969Q0 106 aaKnown RBP10.03□□□□□ -0.8
TNFRSF1A-216ENST00000543995 TRBV7-3A0A075B6L6 115 aa10.02□□□□□ -0.8
TNFRSF1A-216ENST00000543995 A0A1B0GXF2 115 aa10.02□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 105.5 ms