RNA–Protein interactions for RNA: ENST00000542460.5

LIG1-204, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 1,527 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-204ENST00000542460 FAM210BQ96KR6 192 aa12.05□□□□□ -0.48
LIG1-204ENST00000542460 TRGV4A0A0C4DH28 118 aa12.04□□□□□ -0.48
LIG1-204ENST00000542460 CASC10Q5T4H9 136 aa12.04□□□□□ -0.48
LIG1-204ENST00000542460 NUP35Q8NFH5 326 aa12.04□□□□□ -0.48
LIG1-204ENST00000542460 IGLL5B9A064 214 aa12.03□□□□□ -0.48
LIG1-204ENST00000542460 TWIST1Q15672 202 aa12.03□□□□□ -0.48
LIG1-204ENST00000542460 AP1S3Q96PC3 154 aa12.03□□□□□ -0.48
LIG1-204ENST00000542460 SAMD10Q9BYL1 202 aa12.03□□□□□ -0.48
LIG1-204ENST00000542460 CTDSP1Q9GZU7 261 aa12.03□□□□□ -0.48
LIG1-204ENST00000542460 MSRB1Q9NZV6 116 aa12.03□□□□□ -0.48
LIG1-204ENST00000542460 HHLA3Q9XRX5 114 aa12.03□□□□□ -0.48
LIG1-204ENST00000542460 A0A087WWL8 130 aa12.02□□□□□ -0.48
LIG1-204ENST00000542460 A0A1B0GUT8 65 aa12.02□□□□□ -0.48
LIG1-204ENST00000542460 RHODO00212 210 aa12.02□□□□□ -0.48
LIG1-204ENST00000542460 CRYGDP07320 174 aa12.02□□□□□ -0.48
LIG1-204ENST00000542460 FAM74A4Q5TZK3 123 aa12.02□□□□□ -0.48
LIG1-204ENST00000542460 UFSP1Q6NVU6 142 aa12.02□□□□□ -0.48
LIG1-204ENST00000542460 CLRN3Q8NCR9 226 aa12.02□□□□□ -0.48
LIG1-204ENST00000542460 PRO0255Q9UI72 69 aa12.02□□□□□ -0.48
LIG1-204ENST00000542460 CSMD3Q7Z407 3707 aa12.02□□□□□ -0.48
LIG1-204ENST00000542460 TRAV26-1A0A087WT03 109 aa12.01□□□□□ -0.49
LIG1-204ENST00000542460 IGHV3-73A0A0B4J1V6 119 aa12.01□□□□□ -0.49
LIG1-204ENST00000542460 TRGC1P0CF51 173 aa12.01□□□□□ -0.49
LIG1-204ENST00000542460 RHEBQ15382 184 aa12.01□□□□□ -0.49
LIG1-204ENST00000542460 TMEM88Q6PEY1 159 aa12.01□□□□□ -0.49
LIG1-204ENST00000542460 C14orf178Q8N769 122 aaPredicted RBP12.01□□□□□ -0.49
LIG1-204ENST00000542460 C7orf77A4D0Y5 90 aa12.01□□□□□ -0.49
LIG1-204ENST00000542460 SMIM17P0DL12 118 aa12.01□□□□□ -0.49
LIG1-204ENST00000542460 H3BNG1 76 aa12□□□□□ -0.49
LIG1-204ENST00000542460 GATA1P15976 413 aaPredicted RBP12□□□□□ -0.49
LIG1-204ENST00000542460 CRYBA4P53673 196 aa12□□□□□ -0.49
LIG1-204ENST00000542460 TCTAP57738 103 aa12□□□□□ -0.49
LIG1-204ENST00000542460 TMEM242Q9NWH2 141 aa12□□□□□ -0.49
LIG1-204ENST00000542460 A0A087WWC5 75 aa11.99□□□□□ -0.49
LIG1-204ENST00000542460 A0A0J9YY99 117 aa11.99□□□□□ -0.49
LIG1-204ENST00000542460 PAX4O43316 350 aa11.99□□□□□ -0.49
LIG1-204ENST00000542460 EVI2AP22794 236 aa11.99□□□□□ -0.49
LIG1-204ENST00000542460 RIGQ13278 110 aa11.99□□□□□ -0.49
LIG1-204ENST00000542460 SMIM15Q7Z3B0 74 aa11.99□□□□□ -0.49
LIG1-204ENST00000542460 IMMP2LQ96T52 175 aa11.99□□□□□ -0.49
LIG1-204ENST00000542460 RPS10P5Q9NQ39 176 aa11.99□□□□□ -0.49
LIG1-204ENST00000542460 KIF25-AS1Q9Y6Z4 181 aa11.99□□□□□ -0.49
LIG1-204ENST00000542460 TRBV6-4A0A1B0GX49 114 aa11.98□□□□□ -0.49
LIG1-204ENST00000542460 FAM3BP58499 235 aaPredicted RBP11.98□□□□□ -0.49
LIG1-204ENST00000542460 SLC25A29Q8N8R3 303 aa11.98□□□□□ -0.49
LIG1-204ENST00000542460 C15orf53Q8NAA6 179 aa11.98□□□□□ -0.49
LIG1-204ENST00000542460 VSIG2Q96IQ7 327 aa11.98□□□□□ -0.49
LIG1-204ENST00000542460 Q6ZSN1 163 aa11.97□□□□□ -0.49
LIG1-204ENST00000542460 CBLN2Q8IUK8 224 aa11.97□□□□□ -0.49
LIG1-204ENST00000542460 DPH3P1Q9H4G8 78 aa11.97□□□□□ -0.49
LIG1-204ENST00000542460 A0A1B0GW15 77 aa11.96□□□□□ -0.49
LIG1-204ENST00000542460 LINC00315P59091 139 aa11.96□□□□□ -0.49
LIG1-204ENST00000542460 RAB4BP61018 213 aa11.96□□□□□ -0.49
LIG1-204ENST00000542460 ZNF56Q15929 161 aa11.96□□□□□ -0.49
LIG1-204ENST00000542460 APLNQ9ULZ1 77 aa11.96□□□□□ -0.49
LIG1-204ENST00000542460 STARD9Q9P2P6 4700 aa11.96□□□□□ -0.49
LIG1-204ENST00000542460 F5H697 171 aa11.96□□□□□ -0.5
LIG1-204ENST00000542460 RHOHQ15669 191 aa11.96□□□□□ -0.5
LIG1-204ENST00000542460 KCNIP4Q6PIL6 250 aa11.96□□□□□ -0.5
LIG1-204ENST00000542460 PRADC1Q9BSG0 188 aa11.96□□□□□ -0.5
LIG1-204ENST00000542460 DYNC2H1Q8NCM8 4307 aaKnown RBP11.95□□□□□ -0.5
LIG1-204ENST00000542460 NUDT3O95989 172 aa11.95□□□□□ -0.5
LIG1-204ENST00000542460 TMEM191AQ9H0A3 160 aa11.95□□□□□ -0.5
LIG1-204ENST00000542460 K7EQD1 137 aa11.94□□□□□ -0.5
LIG1-204ENST00000542460 MGPP08493 103 aa11.94□□□□□ -0.5
LIG1-204ENST00000542460 GYPEP15421 78 aa11.94□□□□□ -0.5
LIG1-204ENST00000542460 MRPL54Q6P161 138 aaKnown RBP11.94□□□□□ -0.5
LIG1-204ENST00000542460 ATP5L2Q7Z4Y8 100 aa11.94□□□□□ -0.5
LIG1-204ENST00000542460 BTF3L4Q96K17 158 aa11.94□□□□□ -0.5
LIG1-204ENST00000542460 NACAE9PAV3 2078 aa11.93□□□□□ -0.5
LIG1-204ENST00000542460 S100A8P05109 93 aa11.93□□□□□ -0.5
LIG1-204ENST00000542460 S100PP25815 95 aa11.93□□□□□ -0.5
LIG1-204ENST00000542460 CAMPP49913 170 aa11.93□□□□□ -0.5
LIG1-204ENST00000542460 HBBP68871 147 aa11.93□□□□□ -0.5
LIG1-204ENST00000542460 MRPL23Q16540 153 aaKnown RBP11.93□□□□□ -0.5
LIG1-204ENST00000542460 SMCO4Q9NRQ5 59 aa11.93□□□□□ -0.5
LIG1-204ENST00000542460 ICOSQ9Y6W8 199 aa11.93□□□□□ -0.5
LIG1-204ENST00000542460 A0A1B0GXF2 115 aa11.92□□□□□ -0.5
LIG1-204ENST00000542460 TRAV9-1A0A075B6T8 112 aa11.91□□□□□ -0.5
LIG1-204ENST00000542460 A0A096LPF7 62 aa11.91□□□□□ -0.5
LIG1-204ENST00000542460 TRBV10-1A0A0K0K1A3 114 aa11.91□□□□□ -0.5
LIG1-204ENST00000542460 LOC100131303A0A0U1RQF7 123 aa11.91□□□□□ -0.5
LIG1-204ENST00000542460 TENM2Q9NT68 2774 aa11.91□□□□□ -0.5
LIG1-204ENST00000542460 H7C1H1 209 aa11.91□□□□□ -0.5
LIG1-204ENST00000542460 URGCP-MRPS24S4R325 110 aa11.91□□□□□ -0.5
LIG1-204ENST00000542460 RYR2Q92736 4967 aa11.9□□□□□ -0.5
LIG1-204ENST00000542460 M0QY20 66 aa11.9□□□□□ -0.5
LIG1-204ENST00000542460 SRIP30626 198 aa11.9□□□□□ -0.5
LIG1-204ENST00000542460 SUMO4Q6EEV6 95 aa11.9□□□□□ -0.5
LIG1-204ENST00000542460 LYSTQ99698 3801 aa11.9□□□□□ -0.5
LIG1-204ENST00000542460 P0DMU3 169 aa11.89□□□□□ -0.51
LIG1-204ENST00000542460 FAM231AP0DMU4 169 aa11.89□□□□□ -0.51
LIG1-204ENST00000542460 FAM231CP0DMU5 169 aa11.89□□□□□ -0.51
LIG1-204ENST00000542460 NEGR1Q7Z3B1 354 aa11.89□□□□□ -0.51
LIG1-204ENST00000542460 SH2D6Q7Z4S9 175 aa11.89□□□□□ -0.51
LIG1-204ENST00000542460 GATD1Q8NB37 220 aa11.89□□□□□ -0.51
LIG1-204ENST00000542460 FRZBQ92765 325 aa11.89□□□□□ -0.51
LIG1-204ENST00000542460 Q9UF83 564 aa11.89□□□□□ -0.51
LIG1-204ENST00000542460 SACSQ9NZJ4 4579 aa11.89□□□□□ -0.51
LIG1-204ENST00000542460 GAGE12JA6NER3 117 aa11.88□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 85.2 ms