RNA–Protein interactions for RNA: ENST00000541204.5

RNF4-222, Transcript of ring finger protein 4, humanhuman

TSL 1 (best) BASIC

Gene RNF4, Length 2,796 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-222ENST00000541204 ZNF469Q96JG9 3925 aaPredicted RBP9.4□□□□□ -0.91
RNF4-222ENST00000541204 TMEM238C9JI98 176 aa9.39□□□□□ -0.91
RNF4-222ENST00000541204 H3BUA1 57 aa9.39□□□□□ -0.91
RNF4-222ENST00000541204 Q5PR19 223 aa9.39□□□□□ -0.91
RNF4-222ENST00000541204 MTURNQ8N3F0 131 aa9.39□□□□□ -0.91
RNF4-222ENST00000541204 DAZ1Q9NQZ3 744 aaKnown RBP9.39□□□□□ -0.91
RNF4-222ENST00000541204 CHD6Q8TD26 2715 aa9.39□□□□□ -0.91
RNF4-222ENST00000541204 RNASE3P12724 160 aaKnown RBP9.39□□□□□ -0.91
RNF4-222ENST00000541204 CFHR3Q02985 330 aa9.39□□□□□ -0.91
RNF4-222ENST00000541204 HIST2H2BCQ6DN03 193 aa9.39□□□□□ -0.91
RNF4-222ENST00000541204 ATP6V0BQ99437 205 aa9.39□□□□□ -0.91
RNF4-222ENST00000541204 TENM4Q6N022 2769 aa9.38□□□□□ -0.91
RNF4-222ENST00000541204 PRSS29PA6NIE9 313 aa9.38□□□□□ -0.91
RNF4-222ENST00000541204 LGALS1P09382 135 aaKnown RBP9.38□□□□□ -0.91
RNF4-222ENST00000541204 F8W1H4 67 aa9.38□□□□□ -0.91
RNF4-222ENST00000541204 IGHV4-31P0DP07 118 aa9.38□□□□□ -0.91
RNF4-222ENST00000541204 HIST2H2BDQ6DRA6 164 aa9.38□□□□□ -0.91
RNF4-222ENST00000541204 FAM19A4Q96LR4 140 aa9.38□□□□□ -0.91
RNF4-222ENST00000541204 PRADC1Q9BSG0 188 aa9.38□□□□□ -0.91
RNF4-222ENST00000541204 HOXA3O43365 443 aaPredicted RBP9.37□□□□□ -0.91
RNF4-222ENST00000541204 PSMB8P28062 276 aa9.37□□□□□ -0.91
RNF4-222ENST00000541204 RRN3P1Q2M238 152 aa9.37□□□□□ -0.91
RNF4-222ENST00000541204 SH2D6Q7Z4S9 175 aa9.37□□□□□ -0.91
RNF4-222ENST00000541204 SPANXB1Q9NS25 103 aaPredicted RBP9.37□□□□□ -0.91
RNF4-222ENST00000541204 SCGB2A2Q13296 93 aa9.37□□□□□ -0.91
RNF4-222ENST00000541204 Q96MF0 132 aa9.37□□□□□ -0.91
RNF4-222ENST00000541204 PRRC2AP48634 2157 aaKnown RBP9.37□□□□□ -0.91
RNF4-222ENST00000541204 CUBNO60494 3623 aa9.36□□□□□ -0.91
RNF4-222ENST00000541204 MUC4Q99102 2169 aa9.36□□□□□ -0.91
RNF4-222ENST00000541204 DUSP14O95147 198 aaKnown RBP9.36□□□□□ -0.91
RNF4-222ENST00000541204 ZNF815PA8K554 130 aa9.36□□□□□ -0.91
RNF4-222ENST00000541204 DEFB113Q30KQ7 82 aa9.36□□□□□ -0.91
RNF4-222ENST00000541204 ETDBQ3ZM63 59 aa9.36□□□□□ -0.91
RNF4-222ENST00000541204 JPT2Q9H910 190 aa9.36□□□□□ -0.91
RNF4-222ENST00000541204 A0A1B0GWB2 263 aa9.35□□□□□ -0.91
RNF4-222ENST00000541204 IGKV3-20P01619 116 aa9.35□□□□□ -0.91
RNF4-222ENST00000541204 EMP1P54849 157 aa9.35□□□□□ -0.91
RNF4-222ENST00000541204 PLEKHB2Q96CS7 222 aa9.35□□□□□ -0.91
RNF4-222ENST00000541204 LINC01619G3V211 115 aa9.35□□□□□ -0.91
RNF4-222ENST00000541204 J3QLI3 93 aa9.35□□□□□ -0.91
RNF4-222ENST00000541204 CRYGDP07320 174 aa9.35□□□□□ -0.91
RNF4-222ENST00000541204 MED14OSP0DP75 135 aa9.35□□□□□ -0.91
RNF4-222ENST00000541204 SYNJ2BPP57105 145 aa9.35□□□□□ -0.91
RNF4-222ENST00000541204 MORN3Q6PF18 240 aaPredicted RBP9.35□□□□□ -0.91
RNF4-222ENST00000541204 KLHL30-AS1Q8NEE0 82 aa9.35□□□□□ -0.91
RNF4-222ENST00000541204 VPREB3Q9UKI3 123 aa9.35□□□□□ -0.91
RNF4-222ENST00000541204 ITPR3Q14573 2671 aa9.35□□□□□ -0.91
RNF4-222ENST00000541204 SORL1Q92673 2214 aa9.35□□□□□ -0.91
RNF4-222ENST00000541204 BRI3O95415 125 aa9.35□□□□□ -0.91
RNF4-222ENST00000541204 CD300EQ496F6 205 aaPredicted RBP9.35□□□□□ -0.91
RNF4-222ENST00000541204 GAGE13Q4V321 117 aa9.35□□□□□ -0.91
RNF4-222ENST00000541204 SCGB1D4Q6XE38 83 aa9.35□□□□□ -0.91
RNF4-222ENST00000541204 APRG1Q8IVJ8 170 aa9.35□□□□□ -0.91
RNF4-222ENST00000541204 GTSF1LQ9H1H1 148 aa9.35□□□□□ -0.91
RNF4-222ENST00000541204 TSHBP01222 138 aa9.34□□□□□ -0.91
RNF4-222ENST00000541204 LINC00315P59091 139 aa9.34□□□□□ -0.91
RNF4-222ENST00000541204 TSSC4Q9Y5U2 329 aaPredicted RBP9.34□□□□□ -0.91
RNF4-222ENST00000541204 SETD2Q9BYW2 2564 aaPredicted RBP9.34□□□□□ -0.91
RNF4-222ENST00000541204 NF1P21359 2839 aa9.34□□□□□ -0.91
RNF4-222ENST00000541204 ZNF688P0C7X2 276 aa9.34□□□□□ -0.91
RNF4-222ENST00000541204 PGPEP1Q9NXJ5 209 aa9.34□□□□□ -0.91
RNF4-222ENST00000541204 TP53TG1Q9Y2A0 90 aa9.34□□□□□ -0.91
RNF4-222ENST00000541204 KIF25-AS1Q9Y6Z4 181 aa9.34□□□□□ -0.91
RNF4-222ENST00000541204 A0A087WWL8 130 aa9.33□□□□□ -0.92
RNF4-222ENST00000541204 DEFB136Q30KP8 78 aa9.33□□□□□ -0.92
RNF4-222ENST00000541204 C11orf86A6NJI1 115 aa9.33□□□□□ -0.92
RNF4-222ENST00000541204 PPP1R17O96001 155 aa9.33□□□□□ -0.92
RNF4-222ENST00000541204 RPL39P62891 51 aaKnown RBP9.33□□□□□ -0.92
RNF4-222ENST00000541204 SRSF9Q13242 221 aaKnown RBP eCLIP9.33□□□□□ -0.92
RNF4-222ENST00000541204 SAMD13Q5VXD3 122 aa9.33□□□□□ -0.92
RNF4-222ENST00000541204 SFTA2Q6UW10 78 aa9.33□□□□□ -0.92
RNF4-222ENST00000541204 Q6YL49 198 aa9.33□□□□□ -0.92
RNF4-222ENST00000541204 SPAG8Q99932 426 aaPredicted RBP9.33□□□□□ -0.92
RNF4-222ENST00000541204 MRPL16Q9NX20 251 aaKnown RBP9.33□□□□□ -0.92
RNF4-222ENST00000541204 PRO0461Q9UI25 63 aa9.33□□□□□ -0.92
RNF4-222ENST00000541204 IGLV4-69A0A075B6H9 119 aa9.32□□□□□ -0.92
RNF4-222ENST00000541204 AZU1P20160 251 aa9.32□□□□□ -0.92
RNF4-222ENST00000541204 FAM159AQ6UWV7 190 aa9.32□□□□□ -0.92
RNF4-222ENST00000541204 C18orf65Q6ZTR6 163 aa9.32□□□□□ -0.92
RNF4-222ENST00000541204 POM121L12Q8N7R1 296 aa9.32□□□□□ -0.92
RNF4-222ENST00000541204 FLNAP21333 2647 aaKnown RBP9.32□□□□□ -0.92
RNF4-222ENST00000541204 IGHV4OR15-8A0A075B7B6 117 aa9.32□□□□□ -0.92
RNF4-222ENST00000541204 A0A087WW49 117 aa9.32□□□□□ -0.92
RNF4-222ENST00000541204 LINC01549A6NIU2 74 aa9.32□□□□□ -0.92
RNF4-222ENST00000541204 INSL3P51460 131 aa9.32□□□□□ -0.92
RNF4-222ENST00000541204 SUMO4Q6EEV6 95 aa9.32□□□□□ -0.92
RNF4-222ENST00000541204 ZFP2Q6ZN57 461 aa9.32□□□□□ -0.92
RNF4-222ENST00000541204 ZNF702PQ9H963 129 aa9.32□□□□□ -0.92
RNF4-222ENST00000541204 CR1P17927 2039 aa9.32□□□□□ -0.92
RNF4-222ENST00000541204 GAGE12HA6NDE8 117 aa9.31□□□□□ -0.92
RNF4-222ENST00000541204 F5H697 171 aa9.31□□□□□ -0.92
RNF4-222ENST00000541204 NXPH4O95158 308 aa9.31□□□□□ -0.92
RNF4-222ENST00000541204 DUX3Q96PT4 197 aa9.31□□□□□ -0.92
RNF4-222ENST00000541204 TRAV12-3A0A0B4J271 114 aa9.31□□□□□ -0.92
RNF4-222ENST00000541204 IGIPA6NJ69 53 aa9.31□□□□□ -0.92
RNF4-222ENST00000541204 KLLNB2CW77 178 aa9.31□□□□□ -0.92
RNF4-222ENST00000541204 CD7P09564 240 aa9.31□□□□□ -0.92
RNF4-222ENST00000541204 SMAGPQ0VAQ4 97 aa9.31□□□□□ -0.92
RNF4-222ENST00000541204 DCANP1Q8TF63 244 aa9.31□□□□□ -0.92
RNF4-222ENST00000541204 SIGMAR1Q99720 223 aa9.31□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 63.7 ms