RNA–Protein interactions for RNA: ENST00000540798.5

RTN3-210, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 3,124 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-210ENST00000540798 C20orf78Q9BR46 151 aa10.23□□□□□ -0.77
RTN3-210ENST00000540798 DNAJC9-AS1A6NH13 148 aa10.23□□□□□ -0.77
RTN3-210ENST00000540798 DUSP14O95147 198 aaKnown RBP10.23□□□□□ -0.77
RTN3-210ENST00000540798 LAGE3Q14657 143 aa10.23□□□□□ -0.77
RTN3-210ENST00000540798 C14orf178Q8N769 122 aaPredicted RBP10.23□□□□□ -0.77
RTN3-210ENST00000540798 TMEM158Q8WZ71 300 aa10.23□□□□□ -0.77
RTN3-210ENST00000540798 C9orf85Q96MD7 179 aa10.23□□□□□ -0.77
RTN3-210ENST00000540798 SMIM2Q9BVW6 85 aa10.23□□□□□ -0.77
RTN3-210ENST00000540798 ZMAT4Q9H898 229 aa10.23□□□□□ -0.77
RTN3-210ENST00000540798 TRAV12-3A0A0B4J271 114 aa10.22□□□□□ -0.77
RTN3-210ENST00000540798 SLC25A34Q6PIV7 304 aa10.22□□□□□ -0.77
RTN3-210ENST00000540798 IGHV3-16A0A0C4DH30 117 aa10.22□□□□□ -0.77
RTN3-210ENST00000540798 OR11H1Q8NG94 326 aa10.22□□□□□ -0.77
RTN3-210ENST00000540798 OR9G4Q8NGQ1 327 aa10.22□□□□□ -0.77
RTN3-210ENST00000540798 K7EMI3 77 aa10.21□□□□□ -0.77
RTN3-210ENST00000540798 COX8AP10176 69 aa10.21□□□□□ -0.77
RTN3-210ENST00000540798 SIGMAR1Q99720 223 aa10.21□□□□□ -0.77
RTN3-210ENST00000540798 TEX48A0A1B0GUV7 120 aa10.21□□□□□ -0.78
RTN3-210ENST00000540798 ODF1Q14990 250 aa10.21□□□□□ -0.78
RTN3-210ENST00000540798 ZNF479Q96JC4 524 aa10.21□□□□□ -0.78
RTN3-210ENST00000540798 FOXC2Q99958 501 aa10.21□□□□□ -0.78
RTN3-210ENST00000540798 ESM1Q9NQ30 184 aa10.21□□□□□ -0.78
RTN3-210ENST00000540798 PEMTQ9UBM1 199 aa10.21□□□□□ -0.78
RTN3-210ENST00000540798 TSSC4Q9Y5U2 329 aaPredicted RBP10.21□□□□□ -0.78
RTN3-210ENST00000540798 ANK3Q12955 4377 aaKnown RBP10.21□□□□□ -0.78
RTN3-210ENST00000540798 SUMO2P61956 95 aaKnown RBP10.2□□□□□ -0.78
RTN3-210ENST00000540798 CD7P09564 240 aa10.2□□□□□ -0.78
RTN3-210ENST00000540798 SMIM17P0DL12 118 aa10.2□□□□□ -0.78
RTN3-210ENST00000540798 FGF6P10767 208 aa10.2□□□□□ -0.78
RTN3-210ENST00000540798 HERV-K104P63124 156 aa10.2□□□□□ -0.78
RTN3-210ENST00000540798 C18orf15Q96N68 181 aa10.2□□□□□ -0.78
RTN3-210ENST00000540798 TRAV12-2A0A075B6T6 113 aa10.19□□□□□ -0.78
RTN3-210ENST00000540798 H3BUT2 72 aa10.19□□□□□ -0.78
RTN3-210ENST00000540798 RPL32P62910 135 aaKnown RBP10.19□□□□□ -0.78
RTN3-210ENST00000540798 RPL39LQ96EH5 51 aaKnown RBP10.19□□□□□ -0.78
RTN3-210ENST00000540798 DKK2Q9UBU2 259 aa10.19□□□□□ -0.78
RTN3-210ENST00000540798 ATP5LO75964 103 aa10.19□□□□□ -0.78
RTN3-210ENST00000540798 PPP1R17O96001 155 aa10.19□□□□□ -0.78
RTN3-210ENST00000540798 DLX4Q92988 240 aaPredicted RBP10.19□□□□□ -0.78
RTN3-210ENST00000540798 RAB37Q96AX2 223 aa10.19□□□□□ -0.78
RTN3-210ENST00000540798 IGHV1OR15-1A0A075B7D0 117 aa10.18□□□□□ -0.78
RTN3-210ENST00000540798 SPINK13Q1W4C9 94 aa10.18□□□□□ -0.78
RTN3-210ENST00000540798 GEMIN7Q9H840 131 aaKnown RBP10.18□□□□□ -0.78
RTN3-210ENST00000540798 IGKV3-20P01619 116 aa10.18□□□□□ -0.78
RTN3-210ENST00000540798 HLA-DRB4P13762 266 aa10.18□□□□□ -0.78
RTN3-210ENST00000540798 TCTAP57738 103 aa10.18□□□□□ -0.78
RTN3-210ENST00000540798 UFSP1Q6NVU6 142 aa10.18□□□□□ -0.78
RTN3-210ENST00000540798 KLHL30-AS1Q8NEE0 82 aa10.18□□□□□ -0.78
RTN3-210ENST00000540798 HLA-DRB4X5D2U9 266 aa10.18□□□□□ -0.78
RTN3-210ENST00000540798 FLNAP21333 2647 aaKnown RBP10.18□□□□□ -0.78
RTN3-210ENST00000540798 AGRNO00468 2067 aa10.18□□□□□ -0.78
RTN3-210ENST00000540798 Q8N1Y9 231 aa10.18□□□□□ -0.78
RTN3-210ENST00000540798 MGPP08493 103 aa10.17□□□□□ -0.78
RTN3-210ENST00000540798 FHL3Q13643 280 aa10.17□□□□□ -0.78
RTN3-210ENST00000540798 ORMDL2Q53FV1 153 aa10.17□□□□□ -0.78
RTN3-210ENST00000540798 C2orf91Q6ZV80 131 aa10.17□□□□□ -0.78
RTN3-210ENST00000540798 NEGR1Q7Z3B1 354 aa10.17□□□□□ -0.78
RTN3-210ENST00000540798 DUX3Q96PT4 197 aa10.17□□□□□ -0.78
RTN3-210ENST00000540798 MDFICQ9P1T7 246 aa10.17□□□□□ -0.78
RTN3-210ENST00000540798 MAST4O15021 2626 aa10.17□□□□□ -0.78
RTN3-210ENST00000540798 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP10.17□□□□□ -0.78
RTN3-210ENST00000540798 TMEM61Q8N0U2 210 aa10.17□□□□□ -0.78
RTN3-210ENST00000540798 HHLA3Q9XRX5 114 aa10.17□□□□□ -0.78
RTN3-210ENST00000540798 CUBNO60494 3623 aa10.17□□□□□ -0.78
RTN3-210ENST00000540798 TOMM6Q96B49 74 aa10.16□□□□□ -0.78
RTN3-210ENST00000540798 JPT2Q9H910 190 aa10.16□□□□□ -0.78
RTN3-210ENST00000540798 CYSRT1A8MQ03 144 aa10.16□□□□□ -0.78
RTN3-210ENST00000540798 H3BMM0 161 aa10.16□□□□□ -0.78
RTN3-210ENST00000540798 RBMY1A1P0DJD3 496 aaKnown RBP10.16□□□□□ -0.78
RTN3-210ENST00000540798 RBMY1CP0DJD4 496 aa10.16□□□□□ -0.78
RTN3-210ENST00000540798 HSD52Q0P140 79 aa10.16□□□□□ -0.78
RTN3-210ENST00000540798 RBMY1FQ15415 496 aaKnown RBP10.16□□□□□ -0.78
RTN3-210ENST00000540798 DEFB114Q30KQ6 69 aa10.16□□□□□ -0.78
RTN3-210ENST00000540798 BOD1L2Q8IYS8 172 aa10.16□□□□□ -0.78
RTN3-210ENST00000540798 DEFB131AP59861 70 aa10.16□□□□□ -0.78
RTN3-210ENST00000540798 SUMO4Q6EEV6 95 aa10.16□□□□□ -0.78
RTN3-210ENST00000540798 RAX2Q96IS3 184 aa10.16□□□□□ -0.78
RTN3-210ENST00000540798 C16orf95Q9H693 158 aa10.16□□□□□ -0.78
RTN3-210ENST00000540798 RBMY1BA6NDE4 496 aaKnown RBP10.15□□□□□ -0.78
RTN3-210ENST00000540798 RBMY1EA6NEQ0 496 aaKnown RBP10.15□□□□□ -0.78
RTN3-210ENST00000540798 KNCNA6PVL3 124 aa10.15□□□□□ -0.78
RTN3-210ENST00000540798 RBMY1DP0C7P1 496 aaKnown RBP10.15□□□□□ -0.78
RTN3-210ENST00000540798 PGPEP1Q9NXJ5 209 aa10.15□□□□□ -0.78
RTN3-210ENST00000540798 GAGE12HA6NDE8 117 aa10.15□□□□□ -0.79
RTN3-210ENST00000540798 RNASE1P07998 156 aaKnown RBP10.15□□□□□ -0.79
RTN3-210ENST00000540798 GTF2H5Q6ZYL4 71 aa10.15□□□□□ -0.79
RTN3-210ENST00000540798 PRSS1P07477 247 aa10.14□□□□□ -0.79
RTN3-210ENST00000540798 POLR2KP53803 58 aaKnown RBP10.14□□□□□ -0.79
RTN3-210ENST00000540798 SYT8Q8NBV8 401 aa10.14□□□□□ -0.79
RTN3-210ENST00000540798 TRAV12-1A0A0B4J245 112 aa10.14□□□□□ -0.79
RTN3-210ENST00000540798 TRBV6-5A0A0K0K1A5 114 aa10.14□□□□□ -0.79
RTN3-210ENST00000540798 KHDC1LQ5JSQ8 128 aa10.14□□□□□ -0.79
RTN3-210ENST00000540798 MAP6D1Q9H9H5 199 aa10.14□□□□□ -0.79
RTN3-210ENST00000540798 UNC79Q9P2D8 2635 aa10.14□□□□□ -0.79
RTN3-210ENST00000540798 TRGV11A0A075B6L2 103 aa10.13□□□□□ -0.79
RTN3-210ENST00000540798 IGKCP01834 107 aa10.13□□□□□ -0.79
RTN3-210ENST00000540798 ZNF256Q9Y2P7 627 aaPredicted RBP10.13□□□□□ -0.79
RTN3-210ENST00000540798 A0A087WX48 190 aa10.13□□□□□ -0.79
RTN3-210ENST00000540798 CRYGDP07320 174 aa10.13□□□□□ -0.79
RTN3-210ENST00000540798 ITPR2Q14571 2701 aa10.13□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 57.4 ms