RNA–Protein interactions for RNA: ENST00000539522.2

CCDC42-202, Transcript of coiled-coil domain containing 42, humanhuman

TSL 1 (best) BASIC

Gene CCDC42, Length 1,087 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42-202ENST00000539522 C9orf85Q96MD7 179 aa9.19□□□□□ -0.94
CCDC42-202ENST00000539522 TIMM8BQ9Y5J9 83 aaPredicted RBP9.19□□□□□ -0.94
CCDC42-202ENST00000539522 HYDINQ4G0P3 5121 aa9.19□□□□□ -0.94
CCDC42-202ENST00000539522 ALMS1Q8TCU4 4167 aa9.18□□□□□ -0.94
CCDC42-202ENST00000539522 MUC21A0A0G2JKD1 596 aa9.18□□□□□ -0.94
CCDC42-202ENST00000539522 MUC21A0A140T8X8 626 aa9.18□□□□□ -0.94
CCDC42-202ENST00000539522 LYRM9A8MSI8 78 aa9.18□□□□□ -0.94
CCDC42-202ENST00000539522 PHOX2AO14813 284 aa9.18□□□□□ -0.94
CCDC42-202ENST00000539522 SPART-AS1P0CW21 52 aa9.18□□□□□ -0.94
CCDC42-202ENST00000539522 SSTP61278 116 aa9.18□□□□□ -0.94
CCDC42-202ENST00000539522 ZFAND6Q6FIF0 208 aa9.18□□□□□ -0.94
CCDC42-202ENST00000539522 SMIM15Q7Z3B0 74 aa9.18□□□□□ -0.94
CCDC42-202ENST00000539522 TMA7Q9Y2S6 64 aaKnown RBP9.18□□□□□ -0.94
CCDC42-202ENST00000539522 CASC10Q5T4H9 136 aa9.17□□□□□ -0.94
CCDC42-202ENST00000539522 ZFP82Q8N141 532 aa9.17□□□□□ -0.94
CCDC42-202ENST00000539522 POM121L12Q8N7R1 296 aa9.17□□□□□ -0.94
CCDC42-202ENST00000539522 SYT8Q8NBV8 401 aa9.17□□□□□ -0.94
CCDC42-202ENST00000539522 OR10AG1Q8NH19 301 aa9.17□□□□□ -0.94
CCDC42-202ENST00000539522 PTH2Q96A98 100 aa9.17□□□□□ -0.94
CCDC42-202ENST00000539522 SPXQ9BT56 116 aa9.17□□□□□ -0.94
CCDC42-202ENST00000539522 TMEM191AQ9H0A3 160 aa9.17□□□□□ -0.94
CCDC42-202ENST00000539522 MRPL16Q9NX20 251 aaKnown RBP9.17□□□□□ -0.94
CCDC42-202ENST00000539522 TEX48A0A1B0GUV7 120 aa9.16□□□□□ -0.94
CCDC42-202ENST00000539522 TRGC1P0CF51 173 aa9.16□□□□□ -0.94
CCDC42-202ENST00000539522 DEFB130BP0DP73 79 aa9.16□□□□□ -0.94
CCDC42-202ENST00000539522 DEFB130AP0DP74 79 aa9.16□□□□□ -0.94
CCDC42-202ENST00000539522 FAM104BQ5XKR9 115 aa9.16□□□□□ -0.94
CCDC42-202ENST00000539522 PHLDA1Q8WV24 401 aaPredicted RBP9.16□□□□□ -0.94
CCDC42-202ENST00000539522 MSRB1Q9NZV6 116 aa9.16□□□□□ -0.94
CCDC42-202ENST00000539522 GAGE12BA1L429 117 aa9.15□□□□□ -0.94
CCDC42-202ENST00000539522 M0R381 172 aa9.15□□□□□ -0.94
CCDC42-202ENST00000539522 GAGE7O76087 117 aa9.15□□□□□ -0.94
CCDC42-202ENST00000539522 NXPH4O95158 308 aa9.15□□□□□ -0.94
CCDC42-202ENST00000539522 GAGE12FP0CL80 117 aa9.15□□□□□ -0.94
CCDC42-202ENST00000539522 GAGE12GP0CL81 117 aa9.15□□□□□ -0.94
CCDC42-202ENST00000539522 GAGE12IP0CL82 117 aa9.15□□□□□ -0.94
CCDC42-202ENST00000539522 HOXA5P20719 270 aa9.15□□□□□ -0.94
CCDC42-202ENST00000539522 PIK3CD-AS1Q5SR53 167 aa9.15□□□□□ -0.94
CCDC42-202ENST00000539522 DMRTA1Q5VZB9 504 aa9.15□□□□□ -0.94
CCDC42-202ENST00000539522 RYR2Q92736 4967 aa9.14□□□□□ -0.95
CCDC42-202ENST00000539522 RYR3Q15413 4870 aa9.14□□□□□ -0.95
CCDC42-202ENST00000539522 M0R2P5 195 aa9.14□□□□□ -0.95
CCDC42-202ENST00000539522 HIST1H2BKO60814 126 aa9.14□□□□□ -0.95
CCDC42-202ENST00000539522 HIST1H2BJP06899 126 aa9.14□□□□□ -0.95
CCDC42-202ENST00000539522 HIST1H2BOP23527 126 aa9.14□□□□□ -0.95
CCDC42-202ENST00000539522 HIST1H2BBP33778 126 aa9.14□□□□□ -0.95
CCDC42-202ENST00000539522 HIST1H2BDP58876 126 aa9.14□□□□□ -0.95
CCDC42-202ENST00000539522 HIST1H2BCP62807 126 aa9.14□□□□□ -0.95
CCDC42-202ENST00000539522 SLAQ13239 276 aa9.14□□□□□ -0.95
CCDC42-202ENST00000539522 HIST2H2BEQ16778 126 aa9.14□□□□□ -0.95
CCDC42-202ENST00000539522 LGALS9BQ3B8N2 356 aa9.14□□□□□ -0.95
CCDC42-202ENST00000539522 HIST2H2BFQ5QNW6 126 aaPredicted RBP9.14□□□□□ -0.95
CCDC42-202ENST00000539522 RASL10AQ92737 203 aa9.14□□□□□ -0.95
CCDC42-202ENST00000539522 HIST1H2BHQ93079 126 aa9.14□□□□□ -0.95
CCDC42-202ENST00000539522 C18orf15Q96N68 181 aa9.14□□□□□ -0.95
CCDC42-202ENST00000539522 HIST1H2BNQ99877 126 aa9.14□□□□□ -0.95
CCDC42-202ENST00000539522 HIST1H2BMQ99879 126 aa9.14□□□□□ -0.95
CCDC42-202ENST00000539522 TRGV1A0A0A0MS02 117 aa9.13□□□□□ -0.95
CCDC42-202ENST00000539522 DAD1P61803 113 aa9.13□□□□□ -0.95
CCDC42-202ENST00000539522 KIAA1644Q3SXP7 199 aa9.13□□□□□ -0.95
CCDC42-202ENST00000539522 CEMP1Q6PRD7 247 aaPredicted RBP9.13□□□□□ -0.95
CCDC42-202ENST00000539522 C3orf84H3BNL1 204 aa9.12□□□□□ -0.95
CCDC42-202ENST00000539522 PPBPP02775 128 aa9.12□□□□□ -0.95
CCDC42-202ENST00000539522 S100A6P06703 90 aa9.12□□□□□ -0.95
CCDC42-202ENST00000539522 RAB4AP20338 218 aa9.12□□□□□ -0.95
CCDC42-202ENST00000539522 EVI2AP22794 236 aa9.12□□□□□ -0.95
CCDC42-202ENST00000539522 ZNF876PQ49A33 203 aa9.12□□□□□ -0.95
CCDC42-202ENST00000539522 NDUFAF3Q9BU61 184 aa9.12□□□□□ -0.95
CCDC42-202ENST00000539522 DEFB131BA0A096LNP1 70 aa9.11□□□□□ -0.95
CCDC42-202ENST00000539522 TRAV10A0A0B4J240 114 aa9.11□□□□□ -0.95
CCDC42-202ENST00000539522 SMIM17P0DL12 118 aa9.11□□□□□ -0.95
CCDC42-202ENST00000539522 NDUFA6P56556 154 aa9.11□□□□□ -0.95
CCDC42-202ENST00000539522 Q0VG73 95 aa9.11□□□□□ -0.95
CCDC42-202ENST00000539522 MRPL51Q4U2R6 128 aaKnown RBP9.11□□□□□ -0.95
CCDC42-202ENST00000539522 AMN1Q8IY45 258 aa9.11□□□□□ -0.95
CCDC42-202ENST00000539522 C14orf178Q8N769 122 aaPredicted RBP9.11□□□□□ -0.95
CCDC42-202ENST00000539522 RNF185Q96GF1 192 aa9.11□□□□□ -0.95
CCDC42-202ENST00000539522 ZNF479Q96JC4 524 aa9.11□□□□□ -0.95
CCDC42-202ENST00000539522 AP1S3Q96PC3 154 aa9.11□□□□□ -0.95
CCDC42-202ENST00000539522 ALKBH7Q9BT30 221 aaPredicted RBP9.11□□□□□ -0.95
CCDC42-202ENST00000539522 DPH3P1Q9H4G8 78 aa9.11□□□□□ -0.95
CCDC42-202ENST00000539522 JPT2Q9H910 190 aa9.11□□□□□ -0.95
CCDC42-202ENST00000539522 SRIP30626 198 aa9.1□□□□□ -0.95
CCDC42-202ENST00000539522 CKS2P33552 79 aa9.1□□□□□ -0.95
CCDC42-202ENST00000539522 OR10J3Q5JRS4 329 aa9.1□□□□□ -0.95
CCDC42-202ENST00000539522 UFSP1Q6NVU6 142 aa9.1□□□□□ -0.95
CCDC42-202ENST00000539522 SAMD10Q9BYL1 202 aa9.1□□□□□ -0.95
CCDC42-202ENST00000539522 KMT2AQ03164 3969 aa9.09□□□□□ -0.95
CCDC42-202ENST00000539522 TRGV2A0A075B6R0 118 aa9.09□□□□□ -0.95
CCDC42-202ENST00000539522 A8MWV9 139 aa9.09□□□□□ -0.95
CCDC42-202ENST00000539522 RS1O15537 224 aa9.09□□□□□ -0.95
CCDC42-202ENST00000539522 IGHV3-53P01767 116 aa9.09□□□□□ -0.95
CCDC42-202ENST00000539522 HTN3P15516 51 aa9.09□□□□□ -0.95
CCDC42-202ENST00000539522 FHL2Q14192 279 aa9.09□□□□□ -0.95
CCDC42-202ENST00000539522 CFAP126Q5VTH2 177 aa9.09□□□□□ -0.95
CCDC42-202ENST00000539522 ORMDL3Q8N138 153 aa9.09□□□□□ -0.95
CCDC42-202ENST00000539522 MRAP2Q96G30 205 aa9.09□□□□□ -0.95
CCDC42-202ENST00000539522 VSIG2Q96IQ7 327 aa9.09□□□□□ -0.95
CCDC42-202ENST00000539522 APLNQ9ULZ1 77 aa9.09□□□□□ -0.95
CCDC42-202ENST00000539522 KIF25-AS1Q9Y6Z4 181 aa9.09□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms