RNA–Protein interactions for RNA: ENST00000539504.5

SYNE1-237, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 3,768 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-237ENST00000539504 RNF223E7ERA6 249 aa8.48□□□□□ -1.05
SYNE1-237ENST00000539504 K7ENP7 123 aa8.48□□□□□ -1.05
SYNE1-237ENST00000539504 TSHBP01222 138 aa8.48□□□□□ -1.05
SYNE1-237ENST00000539504 CRYBA4P53673 196 aa8.48□□□□□ -1.05
SYNE1-237ENST00000539504 ZNF56Q15929 161 aa8.48□□□□□ -1.05
SYNE1-237ENST00000539504 IGLV4-69A0A075B6H9 119 aa8.47□□□□□ -1.05
SYNE1-237ENST00000539504 J3QQQ9 107 aa8.47□□□□□ -1.05
SYNE1-237ENST00000539504 CFC1BP0CG36 223 aa8.47□□□□□ -1.05
SYNE1-237ENST00000539504 CFC1P0CG37 223 aa8.47□□□□□ -1.05
SYNE1-237ENST00000539504 XGP55808 180 aa8.47□□□□□ -1.05
SYNE1-237ENST00000539504 TSPEAR-AS2P59090 65 aa8.47□□□□□ -1.05
SYNE1-237ENST00000539504 Q6ZUT4 128 aa8.47□□□□□ -1.05
SYNE1-237ENST00000539504 PRO1854Q9UHT4 67 aa8.47□□□□□ -1.05
SYNE1-237ENST00000539504 C10orf126Q8N4M7 172 aa8.47□□□□□ -1.05
SYNE1-237ENST00000539504 AJUBAQ96IF1 538 aa8.47□□□□□ -1.05
SYNE1-237ENST00000539504 OPRPNQ99935 248 aaPredicted RBP8.47□□□□□ -1.05
SYNE1-237ENST00000539504 BEX4Q9NWD9 120 aaPredicted RBP8.47□□□□□ -1.05
SYNE1-237ENST00000539504 TRBV20-1A0A075B6N2 111 aa8.47□□□□□ -1.05
SYNE1-237ENST00000539504 IGHV1-69DA0A0B4J2H0 117 aa8.47□□□□□ -1.05
SYNE1-237ENST00000539504 NDUFA4O00483 81 aa8.47□□□□□ -1.05
SYNE1-237ENST00000539504 UBE2D3P61077 147 aa8.47□□□□□ -1.05
SYNE1-237ENST00000539504 UBE2D2P62837 147 aa8.47□□□□□ -1.05
SYNE1-237ENST00000539504 C9JAW5 83 aa8.46□□□□□ -1.05
SYNE1-237ENST00000539504 ANKRD29Q8N6D5 301 aa8.46□□□□□ -1.05
SYNE1-237ENST00000539504 BSNQ9UPA5 3926 aa8.46□□□□□ -1.05
SYNE1-237ENST00000539504 TMEM141Q96I45 108 aa8.46□□□□□ -1.06
SYNE1-237ENST00000539504 CARD19Q96LW7 228 aa8.46□□□□□ -1.06
SYNE1-237ENST00000539504 IGIPA6NJ69 53 aa8.46□□□□□ -1.06
SYNE1-237ENST00000539504 IGHV3-30P01768 117 aa8.46□□□□□ -1.06
SYNE1-237ENST00000539504 IGHV3-30-5P0DP03 117 aa8.46□□□□□ -1.06
SYNE1-237ENST00000539504 A4D1N5 150 aa8.45□□□□□ -1.06
SYNE1-237ENST00000539504 FHL3Q13643 280 aa8.45□□□□□ -1.06
SYNE1-237ENST00000539504 ZNRF2Q8NHG8 242 aa8.45□□□□□ -1.06
SYNE1-237ENST00000539504 A0A1W2PPR1 153 aa8.45□□□□□ -1.06
SYNE1-237ENST00000539504 ZNF688P0C7X2 276 aa8.45□□□□□ -1.06
SYNE1-237ENST00000539504 MED14OSP0DP75 135 aa8.45□□□□□ -1.06
SYNE1-237ENST00000539504 SLC25A29Q8N8R3 303 aa8.45□□□□□ -1.06
SYNE1-237ENST00000539504 TCF15Q12870 199 aa8.45□□□□□ -1.06
SYNE1-237ENST00000539504 SPG11Q96JI7 2443 aa8.44□□□□□ -1.06
SYNE1-237ENST00000539504 POLR2KP53803 58 aaKnown RBP8.44□□□□□ -1.06
SYNE1-237ENST00000539504 ERG28Q9UKR5 140 aa8.44□□□□□ -1.06
SYNE1-237ENST00000539504 SOCS3O14543 225 aa8.44□□□□□ -1.06
SYNE1-237ENST00000539504 SLC25A20O43772 301 aa8.44□□□□□ -1.06
SYNE1-237ENST00000539504 TRPT1Q86TN4 253 aaKnown RBP8.44□□□□□ -1.06
SYNE1-237ENST00000539504 TRAV12-2A0A075B6T6 113 aa8.44□□□□□ -1.06
SYNE1-237ENST00000539504 IGHV4-39P01824 125 aa8.44□□□□□ -1.06
SYNE1-237ENST00000539504 PRSS2P07478 247 aa8.44□□□□□ -1.06
SYNE1-237ENST00000539504 ID1P41134 155 aa8.44□□□□□ -1.06
SYNE1-237ENST00000539504 SORL1Q92673 2214 aa8.44□□□□□ -1.06
SYNE1-237ENST00000539504 LMO4P61968 165 aa8.43□□□□□ -1.06
SYNE1-237ENST00000539504 TIMM17AQ99595 171 aa8.43□□□□□ -1.06
SYNE1-237ENST00000539504 LINC00315P59091 139 aa8.43□□□□□ -1.06
SYNE1-237ENST00000539504 ANAPC13Q9BS18 74 aa8.43□□□□□ -1.06
SYNE1-237ENST00000539504 VCX2Q9H322 139 aa8.43□□□□□ -1.06
SYNE1-237ENST00000539504 KIF25-AS1Q9Y6Z4 181 aa8.43□□□□□ -1.06
SYNE1-237ENST00000539504 IGHV4OR15-8A0A075B7B6 117 aa8.43□□□□□ -1.06
SYNE1-237ENST00000539504 A0A087WW49 117 aa8.43□□□□□ -1.06
SYNE1-237ENST00000539504 HTN1P15515 57 aa8.43□□□□□ -1.06
SYNE1-237ENST00000539504 KLK9Q2XQG4 91 aa8.43□□□□□ -1.06
SYNE1-237ENST00000539504 KLK9Q9UKQ9 250 aa8.43□□□□□ -1.06
SYNE1-237ENST00000539504 ZNF876PQ49A33 203 aa8.42□□□□□ -1.06
SYNE1-237ENST00000539504 TEX29Q8N6K0 151 aa8.42□□□□□ -1.06
SYNE1-237ENST00000539504 ADARB2-AS1A8MUL3 147 aa8.42□□□□□ -1.06
SYNE1-237ENST00000539504 EDN2P20800 178 aa8.42□□□□□ -1.06
SYNE1-237ENST00000539504 RNF183Q96D59 192 aa8.42□□□□□ -1.06
SYNE1-237ENST00000539504 DAZ1Q9NQZ3 744 aaKnown RBP8.42□□□□□ -1.06
SYNE1-237ENST00000539504 MUC4Q99102 2169 aa8.42□□□□□ -1.06
SYNE1-237ENST00000539504 TMEM262E9PQX1 116 aa8.42□□□□□ -1.06
SYNE1-237ENST00000539504 CRIP2P52943 208 aaPredicted RBP8.42□□□□□ -1.06
SYNE1-237ENST00000539504 ZFAND6Q6FIF0 208 aa8.42□□□□□ -1.06
SYNE1-237ENST00000539504 MUSTN1Q8IVN3 82 aa8.42□□□□□ -1.06
SYNE1-237ENST00000539504 H3BUX3 64 aa8.41□□□□□ -1.06
SYNE1-237ENST00000539504 USMG5Q96IX5 58 aa8.41□□□□□ -1.06
SYNE1-237ENST00000539504 MDFICQ9P1T7 246 aa8.41□□□□□ -1.06
SYNE1-237ENST00000539504 A0A0J9YXV3 536 aa8.41□□□□□ -1.06
SYNE1-237ENST00000539504 BLCAPP62952 87 aa8.41□□□□□ -1.06
SYNE1-237ENST00000539504 SPXQ9BT56 116 aa8.41□□□□□ -1.06
SYNE1-237ENST00000539504 IGHV1-69P01742 117 aa8.4□□□□□ -1.06
SYNE1-237ENST00000539504 NTN5Q8WTR8 489 aaPredicted RBP8.4□□□□□ -1.06
SYNE1-237ENST00000539504 HRNRQ86YZ3 2850 aaPredicted RBP8.4□□□□□ -1.06
SYNE1-237ENST00000539504 CSPG4Q6UVK1 2322 aa8.4□□□□□ -1.06
SYNE1-237ENST00000539504 KLRB1Q12918 225 aa8.4□□□□□ -1.06
SYNE1-237ENST00000539504 IGHV3-33P01772 117 aa8.4□□□□□ -1.07
SYNE1-237ENST00000539504 FAM19A4Q96LR4 140 aa8.4□□□□□ -1.07
SYNE1-237ENST00000539504 IGHV3-73A0A0B4J1V6 119 aa8.39□□□□□ -1.07
SYNE1-237ENST00000539504 LEPROTO15243 131 aa8.39□□□□□ -1.07
SYNE1-237ENST00000539504 RPL32P62910 135 aaKnown RBP8.39□□□□□ -1.07
SYNE1-237ENST00000539504 DOPEY2Q9Y3R5 2298 aa8.39□□□□□ -1.07
SYNE1-237ENST00000539504 TRBV27A0A0K0K1C4 114 aa8.39□□□□□ -1.07
SYNE1-237ENST00000539504 KLLNB2CW77 178 aa8.39□□□□□ -1.07
SYNE1-237ENST00000539504 SNCGO76070 127 aa8.39□□□□□ -1.07
SYNE1-237ENST00000539504 NXPH4O95158 308 aa8.39□□□□□ -1.07
SYNE1-237ENST00000539504 NPC2P61916 151 aa8.39□□□□□ -1.07
SYNE1-237ENST00000539504 HIVEP3Q5T1R4 2406 aa8.39□□□□□ -1.07
SYNE1-237ENST00000539504 SPINK13Q1W4C9 94 aa8.39□□□□□ -1.07
SYNE1-237ENST00000539504 ZNF580Q9UK33 172 aa8.38□□□□□ -1.07
SYNE1-237ENST00000539504 TRBV7-9A0A0J9YWB2 115 aa8.38□□□□□ -1.07
SYNE1-237ENST00000539504 IGHV4-38-2P0DP08 117 aa8.38□□□□□ -1.07
SYNE1-237ENST00000539504 RNASE13Q5GAN3 156 aaKnown RBP8.38□□□□□ -1.07
SYNE1-237ENST00000539504 Q8N1Y9 231 aa8.38□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms