RNA–Protein interactions for RNA: ENST00000538120.5

CLIP1-210, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 3

Gene CLIP1, Length 2,472 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-210ENST00000538120 RNF185Q96GF1 192 aa8.09□□□□□ -1.11
CLIP1-210ENST00000538120 IGKV3D-20A0A0C4DH25 116 aa8.08□□□□□ -1.12
CLIP1-210ENST00000538120 ORM1P02763 201 aa8.08□□□□□ -1.12
CLIP1-210ENST00000538120 PDZD2O15018 2839 aa8.08□□□□□ -1.12
CLIP1-210ENST00000538120 DOPEY2Q9Y3R5 2298 aa8.08□□□□□ -1.12
CLIP1-210ENST00000538120 A0A1W2PPM0 123 aa8.08□□□□□ -1.12
CLIP1-210ENST00000538120 LEPP41159 167 aa8.08□□□□□ -1.12
CLIP1-210ENST00000538120 FXYD2P54710 66 aa8.08□□□□□ -1.12
CLIP1-210ENST00000538120 PRR9Q5T870 116 aa8.08□□□□□ -1.12
CLIP1-210ENST00000538120 SPCS1Q9Y6A9 102 aa8.08□□□□□ -1.12
CLIP1-210ENST00000538120 IGKV3-7A0A075B6H7 116 aa8.07□□□□□ -1.12
CLIP1-210ENST00000538120 G3V4G9 280 aa8.07□□□□□ -1.12
CLIP1-210ENST00000538120 K7ERJ3 54 aa8.07□□□□□ -1.12
CLIP1-210ENST00000538120 LGALS1P09382 135 aaKnown RBP8.07□□□□□ -1.12
CLIP1-210ENST00000538120 SRD5A1P18405 259 aa8.07□□□□□ -1.12
CLIP1-210ENST00000538120 HHLA3Q9XRX5 114 aa8.07□□□□□ -1.12
CLIP1-210ENST00000538120 CREBBPQ92793 2442 aa8.07□□□□□ -1.12
CLIP1-210ENST00000538120 OVOL1O14753 267 aa8.07□□□□□ -1.12
CLIP1-210ENST00000538120 GCSHP23434 173 aa8.07□□□□□ -1.12
CLIP1-210ENST00000538120 RPL11P62913 178 aaKnown RBP8.07□□□□□ -1.12
CLIP1-210ENST00000538120 KRTAP1-1Q07627 177 aa8.07□□□□□ -1.12
CLIP1-210ENST00000538120 UFC1Q9Y3C8 167 aa8.07□□□□□ -1.12
CLIP1-210ENST00000538120 ITPR3Q14573 2671 aa8.06□□□□□ -1.12
CLIP1-210ENST00000538120 IGHV4OR15-8A0A075B7B6 117 aa8.06□□□□□ -1.12
CLIP1-210ENST00000538120 A0A087WW49 117 aa8.06□□□□□ -1.12
CLIP1-210ENST00000538120 NEGR1Q7Z3B1 354 aa8.06□□□□□ -1.12
CLIP1-210ENST00000538120 FAM19A4Q96LR4 140 aa8.06□□□□□ -1.12
CLIP1-210ENST00000538120 UBE2E2Q96LR5 201 aa8.06□□□□□ -1.12
CLIP1-210ENST00000538120 LINC00477Q96M19 166 aa8.06□□□□□ -1.12
CLIP1-210ENST00000538120 AKAP9Q99996 3911 aa8.06□□□□□ -1.12
CLIP1-210ENST00000538120 F6UB75 175 aa8.06□□□□□ -1.12
CLIP1-210ENST00000538120 FHL3Q13643 280 aa8.06□□□□□ -1.12
CLIP1-210ENST00000538120 C18orf65Q6ZTR6 163 aa8.06□□□□□ -1.12
CLIP1-210ENST00000538120 GTSCR1Q86UQ5 136 aa8.06□□□□□ -1.12
CLIP1-210ENST00000538120 ZFAND2AQ8N6M9 145 aa8.06□□□□□ -1.12
CLIP1-210ENST00000538120 DCANP1Q8TF63 244 aa8.06□□□□□ -1.12
CLIP1-210ENST00000538120 CNFNQ9BYD5 112 aa8.06□□□□□ -1.12
CLIP1-210ENST00000538120 LENEPQ9Y5L5 61 aa8.06□□□□□ -1.12
CLIP1-210ENST00000538120 ANK3Q12955 4377 aaKnown RBP8.05□□□□□ -1.12
CLIP1-210ENST00000538120 PRSS1P07477 247 aa8.05□□□□□ -1.12
CLIP1-210ENST00000538120 MAP1LC3AQ9H492 121 aa8.05□□□□□ -1.12
CLIP1-210ENST00000538120 OR10J6PQ8NGY7 276 aa8.05□□□□□ -1.12
CLIP1-210ENST00000538120 SS18L2Q9UHA2 77 aa8.05□□□□□ -1.12
CLIP1-210ENST00000538120 LGALS9O00182 355 aa8.04□□□□□ -1.12
CLIP1-210ENST00000538120 SYNJ2BPP57105 145 aa8.04□□□□□ -1.12
CLIP1-210ENST00000538120 TMEM86BQ8N661 226 aa8.04□□□□□ -1.12
CLIP1-210ENST00000538120 TMEM158Q8WZ71 300 aa8.04□□□□□ -1.12
CLIP1-210ENST00000538120 FOXC2Q99958 501 aa8.04□□□□□ -1.12
CLIP1-210ENST00000538120 SMIM13P0DJ93 91 aa8.04□□□□□ -1.12
CLIP1-210ENST00000538120 FCER1GP30273 86 aa8.04□□□□□ -1.12
CLIP1-210ENST00000538120 HOXD3P31249 432 aaPredicted RBP8.04□□□□□ -1.12
CLIP1-210ENST00000538120 CHAC1Q9BUX1 264 aa8.04□□□□□ -1.12
CLIP1-210ENST00000538120 TRBV25-1A0A075B6N4 114 aa8.03□□□□□ -1.12
CLIP1-210ENST00000538120 TRAV26-2A0A0B4J265 109 aa8.03□□□□□ -1.12
CLIP1-210ENST00000538120 FABP2P12104 132 aa8.03□□□□□ -1.12
CLIP1-210ENST00000538120 ZC2HC1BQ5TFG8 222 aa8.03□□□□□ -1.12
CLIP1-210ENST00000538120 APRG1Q8IVJ8 170 aa8.03□□□□□ -1.12
CLIP1-210ENST00000538120 MRAP2Q96G30 205 aa8.03□□□□□ -1.12
CLIP1-210ENST00000538120 IGKCP01834 107 aa8.03□□□□□ -1.12
CLIP1-210ENST00000538120 SMIM20Q8N5G0 67 aa8.03□□□□□ -1.12
CLIP1-210ENST00000538120 ESM1Q9NQ30 184 aa8.03□□□□□ -1.12
CLIP1-210ENST00000538120 NHP2Q9NX24 153 aaKnown RBP8.03□□□□□ -1.12
CLIP1-210ENST00000538120 DNAJC9-AS1A6NH13 148 aa8.02□□□□□ -1.13
CLIP1-210ENST00000538120 RPL24P83731 157 aaKnown RBP8.02□□□□□ -1.13
CLIP1-210ENST00000538120 Q6ZSV7 163 aa8.02□□□□□ -1.13
CLIP1-210ENST00000538120 STHQ8IWL8 128 aa8.02□□□□□ -1.13
CLIP1-210ENST00000538120 MAPKAPK5-AS1Q8N8E1 139 aa8.02□□□□□ -1.13
CLIP1-210ENST00000538120 OR5A1Q8NGJ0 315 aa8.02□□□□□ -1.13
CLIP1-210ENST00000538120 PHLDA1Q8WV24 401 aaPredicted RBP8.02□□□□□ -1.13
CLIP1-210ENST00000538120 HELZ2Q9BYK8 2649 aaKnown RBP8.02□□□□□ -1.13
CLIP1-210ENST00000538120 TEX48A0A1B0GUV7 120 aa8.02□□□□□ -1.13
CLIP1-210ENST00000538120 LINC01546A6NGU7 62 aa8.02□□□□□ -1.13
CLIP1-210ENST00000538120 DEFB136Q30KP8 78 aa8.02□□□□□ -1.13
CLIP1-210ENST00000538120 TEX29Q8N6K0 151 aa8.02□□□□□ -1.13
CLIP1-210ENST00000538120 IGLV2-18A0A075B6J9 118 aa8.01□□□□□ -1.13
CLIP1-210ENST00000538120 SLURP1P55000 103 aa8.01□□□□□ -1.13
CLIP1-210ENST00000538120 HIST2H2BDQ6DRA6 164 aa8.01□□□□□ -1.13
CLIP1-210ENST00000538120 MRPL35Q9NZE8 188 aaKnown RBP8.01□□□□□ -1.13
CLIP1-210ENST00000538120 K7EQG2 157 aa8.01□□□□□ -1.13
CLIP1-210ENST00000538120 SMIM17P0DL12 118 aa8.01□□□□□ -1.13
CLIP1-210ENST00000538120 NXT2Q9NPJ8 142 aaKnown RBP8.01□□□□□ -1.13
CLIP1-210ENST00000538120 TRAV21A0A0B4J279 112 aa8□□□□□ -1.13
CLIP1-210ENST00000538120 RNASE4P34096 147 aaKnown RBP8□□□□□ -1.13
CLIP1-210ENST00000538120 MRAPQ8TCY5 172 aa8□□□□□ -1.13
CLIP1-210ENST00000538120 HIGD1BQ9P298 99 aa8□□□□□ -1.13
CLIP1-210ENST00000538120 CCDC168Q8NDH2 2452 aa8□□□□□ -1.13
CLIP1-210ENST00000538120 IGHV4-4A0A075B6R2 117 aa8□□□□□ -1.13
CLIP1-210ENST00000538120 SPRY2O43597 315 aa8□□□□□ -1.13
CLIP1-210ENST00000538120 DPM2O94777 84 aa8□□□□□ -1.13
CLIP1-210ENST00000538120 ZNF688P0C7X2 276 aa8□□□□□ -1.13
CLIP1-210ENST00000538120 Q8N8P6 123 aa8□□□□□ -1.13
CLIP1-210ENST00000538120 FLNAP21333 2647 aaKnown RBP7.99□□□□□ -1.13
CLIP1-210ENST00000538120 KLLNB2CW77 178 aa7.99□□□□□ -1.13
CLIP1-210ENST00000538120 ANXA2RQ3ZCQ2 193 aa7.99□□□□□ -1.13
CLIP1-210ENST00000538120 CEND1Q8N111 149 aa7.99□□□□□ -1.13
CLIP1-210ENST00000538120 C4orf3Q8WVX3 66 aa7.99□□□□□ -1.13
CLIP1-210ENST00000538120 TLN2Q9Y4G6 2542 aa7.99□□□□□ -1.13
CLIP1-210ENST00000538120 LINC01619G3V211 115 aa7.98□□□□□ -1.13
CLIP1-210ENST00000538120 PSMG4Q5JS54 123 aa7.98□□□□□ -1.13
CLIP1-210ENST00000538120 FAM159AQ6UWV7 190 aa7.98□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms