RNA–Protein interactions for RNA: ENST00000537004.5

CLIP1-208, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,000 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-208ENST00000537004 C3orf79P0CE67 100 aa8.79□□□□□ -1
CLIP1-208ENST00000537004 IGLC3P0DOY3 106 aa8.79□□□□□ -1
CLIP1-208ENST00000537004 CKS2P33552 79 aa8.79□□□□□ -1
CLIP1-208ENST00000537004 ANXA2RQ3ZCQ2 193 aa8.79□□□□□ -1
CLIP1-208ENST00000537004 WFDC10AQ9H1F0 79 aa8.79□□□□□ -1
CLIP1-208ENST00000537004 IGHV4-4A0A075B6R2 117 aa8.78□□□□□ -1
CLIP1-208ENST00000537004 CD7P09564 240 aa8.78□□□□□ -1
CLIP1-208ENST00000537004 HNRNPA3P51991 378 aaKnown RBP8.78□□□□□ -1
CLIP1-208ENST00000537004 CACNG7P62955 275 aa8.78□□□□□ -1
CLIP1-208ENST00000537004 EBLN2Q6P2I7 272 aa8.78□□□□□ -1
CLIP1-208ENST00000537004 TMEM61Q8N0U2 210 aa8.78□□□□□ -1
CLIP1-208ENST00000537004 RNF185Q96GF1 192 aa8.78□□□□□ -1
CLIP1-208ENST00000537004 ODF3Q96PU9 254 aa8.78□□□□□ -1
CLIP1-208ENST00000537004 MRPS16Q9Y3D3 137 aaKnown RBP8.78□□□□□ -1
CLIP1-208ENST00000537004 PRSS47A8MTI9 375 aa8.78□□□□□ -1
CLIP1-208ENST00000537004 SMKR1H3BMG3 65 aa8.78□□□□□ -1
CLIP1-208ENST00000537004 ASIPP42127 132 aa8.78□□□□□ -1
CLIP1-208ENST00000537004 SPANXN1Q5VSR9 72 aa8.78□□□□□ -1
CLIP1-208ENST00000537004 Q6ZN92 141 aa8.78□□□□□ -1
CLIP1-208ENST00000537004 PRSS3P2Q8NHM4 247 aa8.78□□□□□ -1
CLIP1-208ENST00000537004 TIMM8BQ9Y5J9 83 aaPredicted RBP8.78□□□□□ -1
CLIP1-208ENST00000537004 COX11Q9Y6N1 276 aa8.78□□□□□ -1
CLIP1-208ENST00000537004 NCR2O95944 276 aa8.77□□□□□ -1.01
CLIP1-208ENST00000537004 LEPP41159 167 aa8.77□□□□□ -1.01
CLIP1-208ENST00000537004 GTSCR1Q86UQ5 136 aa8.77□□□□□ -1.01
CLIP1-208ENST00000537004 AP5S1Q9NUS5 200 aa8.77□□□□□ -1.01
CLIP1-208ENST00000537004 NPYP01303 97 aa8.76□□□□□ -1.01
CLIP1-208ENST00000537004 IGKV3-20P01619 116 aa8.76□□□□□ -1.01
CLIP1-208ENST00000537004 PPBPP02775 128 aa8.76□□□□□ -1.01
CLIP1-208ENST00000537004 NHLRC4P0CG21 123 aaPredicted RBP8.76□□□□□ -1.01
CLIP1-208ENST00000537004 EVI2AP22794 236 aa8.76□□□□□ -1.01
CLIP1-208ENST00000537004 S100A4P26447 101 aaKnown RBP8.76□□□□□ -1.01
CLIP1-208ENST00000537004 IFI27P40305 119 aaPredicted RBP8.76□□□□□ -1.01
CLIP1-208ENST00000537004 FOXI2Q6ZQN5 318 aa8.76□□□□□ -1.01
CLIP1-208ENST00000537004 FA2HQ7L5A8 372 aa8.76□□□□□ -1.01
CLIP1-208ENST00000537004 SMIM15Q7Z3B0 74 aa8.76□□□□□ -1.01
CLIP1-208ENST00000537004 C19orf73Q9NVV2 129 aa8.76□□□□□ -1.01
CLIP1-208ENST00000537004 LOC389332A0A1B0GUA5 103 aa8.76□□□□□ -1.01
CLIP1-208ENST00000537004 C7orf71A4D174 169 aa8.76□□□□□ -1.01
CLIP1-208ENST00000537004 GNRH2O43555 120 aa8.76□□□□□ -1.01
CLIP1-208ENST00000537004 DNAH7Q8WXX0 4024 aa8.75□□□□□ -1.01
CLIP1-208ENST00000537004 TRAV12-3A0A0B4J271 114 aa8.75□□□□□ -1.01
CLIP1-208ENST00000537004 DUSP14O95147 198 aaKnown RBP8.75□□□□□ -1.01
CLIP1-208ENST00000537004 MED14OSP0DP75 135 aa8.75□□□□□ -1.01
CLIP1-208ENST00000537004 DEFB125Q8N687 156 aa8.75□□□□□ -1.01
CLIP1-208ENST00000537004 OR2K2Q8NGT1 345 aa8.75□□□□□ -1.01
CLIP1-208ENST00000537004 TRAV2A0A0B4J234 112 aa8.75□□□□□ -1.01
CLIP1-208ENST00000537004 GAS8-AS1O95177 125 aa8.75□□□□□ -1.01
CLIP1-208ENST00000537004 LEPROTL1O95214 131 aa8.75□□□□□ -1.01
CLIP1-208ENST00000537004 FAM159AQ6UWV7 190 aa8.75□□□□□ -1.01
CLIP1-208ENST00000537004 SCRT2Q9NQ03 307 aa8.75□□□□□ -1.01
CLIP1-208ENST00000537004 PHLDA3Q9Y5J5 127 aa8.75□□□□□ -1.01
CLIP1-208ENST00000537004 TRAV12-2A0A075B6T6 113 aa8.74□□□□□ -1.01
CLIP1-208ENST00000537004 M0R381 172 aa8.74□□□□□ -1.01
CLIP1-208ENST00000537004 SPRY2O43597 315 aa8.74□□□□□ -1.01
CLIP1-208ENST00000537004 RNASE3P12724 160 aaKnown RBP8.74□□□□□ -1.01
CLIP1-208ENST00000537004 TSPOP30536 169 aa8.74□□□□□ -1.01
CLIP1-208ENST00000537004 SPINK13Q1W4C9 94 aa8.74□□□□□ -1.01
CLIP1-208ENST00000537004 LINC00173Q6ZV60 143 aa8.74□□□□□ -1.01
CLIP1-208ENST00000537004 CSMD3Q7Z407 3707 aa8.73□□□□□ -1.01
CLIP1-208ENST00000537004 OR11H12B2RN74 326 aa8.73□□□□□ -1.01
CLIP1-208ENST00000537004 DEFB131AP59861 70 aa8.73□□□□□ -1.01
CLIP1-208ENST00000537004 TMEM70Q9BUB7 260 aa8.73□□□□□ -1.01
CLIP1-208ENST00000537004 A8MZ25 164 aa8.73□□□□□ -1.01
CLIP1-208ENST00000537004 TNFRSF6BO95407 300 aa8.73□□□□□ -1.01
CLIP1-208ENST00000537004 AMTNQ6UX39 209 aa8.73□□□□□ -1.01
CLIP1-208ENST00000537004 WWC2-AS2Q96NR7 200 aa8.73□□□□□ -1.01
CLIP1-208ENST00000537004 MAP1LC3AQ9H492 121 aa8.73□□□□□ -1.01
CLIP1-208ENST00000537004 RBMY1BA6NDE4 496 aaKnown RBP8.72□□□□□ -1.01
CLIP1-208ENST00000537004 RBMY1EA6NEQ0 496 aaKnown RBP8.72□□□□□ -1.01
CLIP1-208ENST00000537004 KNCNA6PVL3 124 aa8.72□□□□□ -1.01
CLIP1-208ENST00000537004 RBMY1DP0C7P1 496 aaKnown RBP8.72□□□□□ -1.01
CLIP1-208ENST00000537004 GATA1P15976 413 aaPredicted RBP8.72□□□□□ -1.01
CLIP1-208ENST00000537004 OR4C5Q8NGB2 326 aa8.72□□□□□ -1.01
CLIP1-208ENST00000537004 HSPB8Q9UJY1 196 aa8.72□□□□□ -1.01
CLIP1-208ENST00000537004 TRAV26-2A0A0B4J265 109 aa8.71□□□□□ -1.01
CLIP1-208ENST00000537004 CRXO43186 299 aaPredicted RBP8.71□□□□□ -1.01
CLIP1-208ENST00000537004 HLA-DRB4P13762 266 aa8.71□□□□□ -1.01
CLIP1-208ENST00000537004 TM2D3Q9BRN9 247 aa8.71□□□□□ -1.01
CLIP1-208ENST00000537004 RETNQ9HD89 108 aa8.71□□□□□ -1.01
CLIP1-208ENST00000537004 HLA-DRB4X5D2U9 266 aa8.71□□□□□ -1.01
CLIP1-208ENST00000537004 A0A096LNJ9 63 aa8.71□□□□□ -1.02
CLIP1-208ENST00000537004 SYS1-DBNDD2H3BUS1 97 aa8.71□□□□□ -1.02
CLIP1-208ENST00000537004 NXPH4O95158 308 aa8.71□□□□□ -1.02
CLIP1-208ENST00000537004 HINT1P49773 126 aaPredicted RBP8.71□□□□□ -1.02
CLIP1-208ENST00000537004 SPATA12Q7Z6I5 190 aa8.71□□□□□ -1.02
CLIP1-208ENST00000537004 SPAG8Q99932 426 aaPredicted RBP8.71□□□□□ -1.02
CLIP1-208ENST00000537004 ZMAT4Q9H898 229 aa8.71□□□□□ -1.02
CLIP1-208ENST00000537004 MAP6D1Q9H9H5 199 aa8.71□□□□□ -1.02
CLIP1-208ENST00000537004 OR4C46A6NHA9 309 aa8.7□□□□□ -1.02
CLIP1-208ENST00000537004 A8MTW9 85 aa8.7□□□□□ -1.02
CLIP1-208ENST00000537004 H3BMM0 161 aa8.7□□□□□ -1.02
CLIP1-208ENST00000537004 ATOH7Q8N100 152 aa8.7□□□□□ -1.02
CLIP1-208ENST00000537004 C14orf178Q8N769 122 aaPredicted RBP8.7□□□□□ -1.02
CLIP1-208ENST00000537004 NRACQ8N912 160 aa8.7□□□□□ -1.02
CLIP1-208ENST00000537004 MRAP2Q96G30 205 aa8.7□□□□□ -1.02
CLIP1-208ENST00000537004 AP1S3Q96PC3 154 aa8.7□□□□□ -1.02
CLIP1-208ENST00000537004 MAP1LC3CQ9BXW4 147 aa8.7□□□□□ -1.02
CLIP1-208ENST00000537004 DPH3P1Q9H4G8 78 aa8.7□□□□□ -1.02
CLIP1-208ENST00000537004 TRAV9-2A0A087WT02 112 aa8.7□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 55.6 ms