RNA–Protein interactions for RNA: ENST00000535493.5

HDAC4-214, Transcript of histone deacetylase 4, humanhuman

TSL 2

Gene HDAC4, Length 2,743 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-214ENST00000535493 ZNRF2Q8NHG8 242 aa10.08□□□□□ -0.8
HDAC4-214ENST00000535493 ITPR1Q14643 2758 aa10.07□□□□□ -0.8
HDAC4-214ENST00000535493 TRAV41A0A0B4J266 112 aa10.07□□□□□ -0.8
HDAC4-214ENST00000535493 OOSP1A8MZH6 123 aa10.07□□□□□ -0.8
HDAC4-214ENST00000535493 CFC1BP0CG36 223 aa10.07□□□□□ -0.8
HDAC4-214ENST00000535493 CFC1P0CG37 223 aa10.07□□□□□ -0.8
HDAC4-214ENST00000535493 NDUFA11Q86Y39 141 aa10.07□□□□□ -0.8
HDAC4-214ENST00000535493 SCGB1A1P11684 91 aa10.07□□□□□ -0.8
HDAC4-214ENST00000535493 CRIP2P52943 208 aaPredicted RBP10.07□□□□□ -0.8
HDAC4-214ENST00000535493 C1orf122Q6ZSJ8 110 aa10.07□□□□□ -0.8
HDAC4-214ENST00000535493 C9orf139Q6ZV77 190 aa10.06□□□□□ -0.8
HDAC4-214ENST00000535493 GEMIN7Q9H840 131 aaKnown RBP10.06□□□□□ -0.8
HDAC4-214ENST00000535493 ZNF580Q9UK33 172 aa10.06□□□□□ -0.8
HDAC4-214ENST00000535493 C2CD3Q4AC94 2353 aa10.06□□□□□ -0.8
HDAC4-214ENST00000535493 TRAV12-3A0A0B4J271 114 aa10.06□□□□□ -0.8
HDAC4-214ENST00000535493 TMEM238LA0A1B0GVL6 79 aa10.06□□□□□ -0.8
HDAC4-214ENST00000535493 A6NJY4 79 aa10.06□□□□□ -0.8
HDAC4-214ENST00000535493 TRPT1Q86TN4 253 aaKnown RBP10.06□□□□□ -0.8
HDAC4-214ENST00000535493 LINC00477Q96M19 166 aa10.06□□□□□ -0.8
HDAC4-214ENST00000535493 TRAV12-2A0A075B6T6 113 aa10.06□□□□□ -0.8
HDAC4-214ENST00000535493 SUMO4Q6EEV6 95 aa10.06□□□□□ -0.8
HDAC4-214ENST00000535493 MRPL53Q96EL3 112 aaKnown RBP10.06□□□□□ -0.8
HDAC4-214ENST00000535493 FLNCQ14315 2725 aa10.05□□□□□ -0.8
HDAC4-214ENST00000535493 NPFFO15130 113 aa10.05□□□□□ -0.8
HDAC4-214ENST00000535493 GATA3P23771 443 aa10.05□□□□□ -0.8
HDAC4-214ENST00000535493 LINC00315P59091 139 aa10.05□□□□□ -0.8
HDAC4-214ENST00000535493 IGIPA6NJ69 53 aa10.05□□□□□ -0.8
HDAC4-214ENST00000535493 ADARB2-AS1A8MUL3 147 aa10.05□□□□□ -0.8
HDAC4-214ENST00000535493 CRYBA4P53673 196 aa10.05□□□□□ -0.8
HDAC4-214ENST00000535493 UBE2D3P61077 147 aa10.05□□□□□ -0.8
HDAC4-214ENST00000535493 UBE2D2P62837 147 aa10.05□□□□□ -0.8
HDAC4-214ENST00000535493 POLQO75417 2590 aa10.05□□□□□ -0.8
HDAC4-214ENST00000535493 SDHAF1A6NFY7 115 aa10.04□□□□□ -0.8
HDAC4-214ENST00000535493 Q6ZUT4 128 aa10.04□□□□□ -0.8
HDAC4-214ENST00000535493 NACAE9PAV3 2078 aa10.04□□□□□ -0.8
HDAC4-214ENST00000535493 SOCS3O14543 225 aa10.04□□□□□ -0.8
HDAC4-214ENST00000535493 IGHV3-30P01768 117 aa10.04□□□□□ -0.8
HDAC4-214ENST00000535493 IGHV3-30-5P0DP03 117 aa10.04□□□□□ -0.8
HDAC4-214ENST00000535493 BLCAPP62952 87 aa10.04□□□□□ -0.8
HDAC4-214ENST00000535493 K7ENP7 123 aa10.03□□□□□ -0.8
HDAC4-214ENST00000535493 PF4V1P10720 104 aa10.03□□□□□ -0.8
HDAC4-214ENST00000535493 RHPN1-AS1Q9BWJ2 59 aa10.03□□□□□ -0.8
HDAC4-214ENST00000535493 BEX4Q9NWD9 120 aaPredicted RBP10.03□□□□□ -0.8
HDAC4-214ENST00000535493 KIF25-AS1Q9Y6Z4 181 aa10.03□□□□□ -0.8
HDAC4-214ENST00000535493 TRAV2A0A0B4J234 112 aa10.03□□□□□ -0.8
HDAC4-214ENST00000535493 EIF4EBP3O60516 100 aaPredicted RBP10.03□□□□□ -0.8
HDAC4-214ENST00000535493 ELANEP08246 267 aa10.03□□□□□ -0.8
HDAC4-214ENST00000535493 PMVKQ15126 192 aa10.03□□□□□ -0.8
HDAC4-214ENST00000535493 ANKRD29Q8N6D5 301 aa10.03□□□□□ -0.8
HDAC4-214ENST00000535493 LINC01619G3V211 115 aa10.02□□□□□ -0.81
HDAC4-214ENST00000535493 LMO4P61968 165 aa10.02□□□□□ -0.81
HDAC4-214ENST00000535493 FAM159AQ6UWV7 190 aa10.02□□□□□ -0.81
HDAC4-214ENST00000535493 MDFICQ9P1T7 246 aa10.02□□□□□ -0.81
HDAC4-214ENST00000535493 MXRA5Q9NR99 2828 aa10.02□□□□□ -0.81
HDAC4-214ENST00000535493 A4D1N5 150 aa10.02□□□□□ -0.81
HDAC4-214ENST00000535493 FBXL19-AS1Q494R0 122 aa10.02□□□□□ -0.81
HDAC4-214ENST00000535493 SVIPQ8NHG7 77 aa10.02□□□□□ -0.81
HDAC4-214ENST00000535493 J3QQQ9 107 aa10.01□□□□□ -0.81
HDAC4-214ENST00000535493 OVOL1O14753 267 aa10.01□□□□□ -0.81
HDAC4-214ENST00000535493 HTN1P15515 57 aa10.01□□□□□ -0.81
HDAC4-214ENST00000535493 POLR2KP53803 58 aaKnown RBP10.01□□□□□ -0.81
HDAC4-214ENST00000535493 TEN1Q86WV5 123 aa10.01□□□□□ -0.81
HDAC4-214ENST00000535493 KLK9Q9UKQ9 250 aa10.01□□□□□ -0.81
HDAC4-214ENST00000535493 C9JAW5 83 aa10□□□□□ -0.81
HDAC4-214ENST00000535493 HERVK_113P61574 105 aa10□□□□□ -0.81
HDAC4-214ENST00000535493 TMEM95Q3KNT9 176 aa10□□□□□ -0.81
HDAC4-214ENST00000535493 RNASE13Q5GAN3 156 aaKnown RBP10□□□□□ -0.81
HDAC4-214ENST00000535493 C10orf126Q8N4M7 172 aa10□□□□□ -0.81
HDAC4-214ENST00000535493 SLC25A29Q8N8R3 303 aa10□□□□□ -0.81
HDAC4-214ENST00000535493 LENEPQ9Y5L5 61 aa10□□□□□ -0.81
HDAC4-214ENST00000535493 A8MWV9 139 aa10□□□□□ -0.81
HDAC4-214ENST00000535493 ZNF56Q15929 161 aa10□□□□□ -0.81
HDAC4-214ENST00000535493 RNF183Q96D59 192 aa10□□□□□ -0.81
HDAC4-214ENST00000535493 AMELXQ99217 191 aa10□□□□□ -0.81
HDAC4-214ENST00000535493 MYO9AB2RTY4 2548 aa10□□□□□ -0.81
HDAC4-214ENST00000535493 AKAP9Q99996 3911 aa9.99□□□□□ -0.81
HDAC4-214ENST00000535493 IGHV3-73A0A0B4J1V6 119 aa9.99□□□□□ -0.81
HDAC4-214ENST00000535493 LGALS3P17931 250 aaKnown RBP9.99□□□□□ -0.81
HDAC4-214ENST00000535493 TCTEX1D4Q5JR98 221 aa9.99□□□□□ -0.81
HDAC4-214ENST00000535493 PPDPFLQ8WWR9 84 aa9.99□□□□□ -0.81
HDAC4-214ENST00000535493 PRO1854Q9UHT4 67 aa9.99□□□□□ -0.81
HDAC4-214ENST00000535493 NIPBLQ6KC79 2804 aaeCLIP9.99□□□□□ -0.81
HDAC4-214ENST00000535493 PRM2P04554 102 aa9.99□□□□□ -0.81
HDAC4-214ENST00000535493 ZNF688P0C7X2 276 aa9.99□□□□□ -0.81
HDAC4-214ENST00000535493 NPC2P61916 151 aa9.99□□□□□ -0.81
HDAC4-214ENST00000535493 MOB4Q9Y3A3 225 aa9.99□□□□□ -0.81
HDAC4-214ENST00000535493 VCYO14598 125 aa9.98□□□□□ -0.81
HDAC4-214ENST00000535493 IGHV4-39P01824 125 aa9.98□□□□□ -0.81
HDAC4-214ENST00000535493 IGHV4-38-2P0DP08 117 aa9.98□□□□□ -0.81
HDAC4-214ENST00000535493 CEMP1Q6PRD7 247 aaPredicted RBP9.98□□□□□ -0.81
HDAC4-214ENST00000535493 USP9XQ93008 2570 aaPredicted RBP9.98□□□□□ -0.81
HDAC4-214ENST00000535493 NDUFA4O00483 81 aa9.98□□□□□ -0.81
HDAC4-214ENST00000535493 MUSTN1Q8IVN3 82 aa9.98□□□□□ -0.81
HDAC4-214ENST00000535493 FAM19A4Q96LR4 140 aa9.98□□□□□ -0.81
HDAC4-214ENST00000535493 FBN2P35556 2912 aa9.98□□□□□ -0.81
HDAC4-214ENST00000535493 SETD2Q9BYW2 2564 aaPredicted RBP9.98□□□□□ -0.81
HDAC4-214ENST00000535493 A0A0J9YXV3 536 aa9.98□□□□□ -0.81
HDAC4-214ENST00000535493 Q1RN00 199 aa9.98□□□□□ -0.81
HDAC4-214ENST00000535493 ZNF876PQ49A33 203 aa9.98□□□□□ -0.81
HDAC4-214ENST00000535493 C10orf99Q6UWK7 81 aa9.98□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 105 ms