RNA–Protein interactions for RNA: ENST00000529288.1

CPSF1-204, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 588 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-204ENST00000529288 HIST1H2BAQ96A08 127 aa8.65□□□□□ -1.02
CPSF1-204ENST00000529288 ZC2HC1AQ96GY0 325 aa8.65□□□□□ -1.02
CPSF1-204ENST00000529288 TMEM70Q9BUB7 260 aa8.65□□□□□ -1.02
CPSF1-204ENST00000529288 ZNF471Q9BX82 626 aaPredicted RBP8.65□□□□□ -1.02
CPSF1-204ENST00000529288 MAP1LC3BQ9GZQ8 125 aa8.65□□□□□ -1.02
CPSF1-204ENST00000529288 IL36BQ9NZH7 164 aa8.65□□□□□ -1.02
CPSF1-204ENST00000529288 URGCP-MRPS24S4R325 110 aa8.65□□□□□ -1.02
CPSF1-204ENST00000529288 HERC1Q15751 4861 aa8.64□□□□□ -1.03
CPSF1-204ENST00000529288 TRAV8-3A0A0A6YYJ7 113 aa8.64□□□□□ -1.03
CPSF1-204ENST00000529288 KRBOX1C9JBD0 128 aa8.64□□□□□ -1.03
CPSF1-204ENST00000529288 M0R381 172 aa8.64□□□□□ -1.03
CPSF1-204ENST00000529288 C1QBP02746 253 aa8.64□□□□□ -1.03
CPSF1-204ENST00000529288 TOR2AQ5JU69 321 aa8.64□□□□□ -1.03
CPSF1-204ENST00000529288 BAALCQ8WXS3 180 aa8.64□□□□□ -1.03
CPSF1-204ENST00000529288 NKX6-2Q9C056 277 aaPredicted RBP8.64□□□□□ -1.03
CPSF1-204ENST00000529288 FAM30AQ9NZY2 134 aa8.64□□□□□ -1.03
CPSF1-204ENST00000529288 PHLDA3Q9Y5J5 127 aa8.64□□□□□ -1.03
CPSF1-204ENST00000529288 VPS13BQ7Z7G8 4022 aa8.63□□□□□ -1.03
CPSF1-204ENST00000529288 hCG_2014768A0A024R1R8 64 aa8.63□□□□□ -1.03
CPSF1-204ENST00000529288 A0A087WWC5 75 aa8.63□□□□□ -1.03
CPSF1-204ENST00000529288 UMAD1C9J7I0 102 aa8.63□□□□□ -1.03
CPSF1-204ENST00000529288 RHODO00212 210 aa8.63□□□□□ -1.03
CPSF1-204ENST00000529288 TPT1P13693 172 aaKnown RBP8.63□□□□□ -1.03
CPSF1-204ENST00000529288 LAGE3Q14657 143 aa8.63□□□□□ -1.03
CPSF1-204ENST00000529288 FAM162BQ5T6X4 162 aa8.63□□□□□ -1.03
CPSF1-204ENST00000529288 MBD3L1Q8WWY6 194 aa8.63□□□□□ -1.03
CPSF1-204ENST00000529288 ZFP30Q9Y2G7 519 aa8.63□□□□□ -1.03
CPSF1-204ENST00000529288 IGKV2D-24A0A075B6R9 120 aa8.62□□□□□ -1.03
CPSF1-204ENST00000529288 A0A1B0GVG6 124 aa8.62□□□□□ -1.03
CPSF1-204ENST00000529288 PIK3CD-AS1Q5SR53 167 aa8.62□□□□□ -1.03
CPSF1-204ENST00000529288 UFSP1Q6NVU6 142 aa8.62□□□□□ -1.03
CPSF1-204ENST00000529288 FMC1Q96HJ9 113 aa8.62□□□□□ -1.03
CPSF1-204ENST00000529288 A0A1B0GV50 99 aa8.61□□□□□ -1.03
CPSF1-204ENST00000529288 PFDN1O60925 122 aa8.61□□□□□ -1.03
CPSF1-204ENST00000529288 LINC00694P0DN24 101 aa8.61□□□□□ -1.03
CPSF1-204ENST00000529288 AKR1C3P42330 323 aa8.61□□□□□ -1.03
CPSF1-204ENST00000529288 KCNIP4Q6PIL6 250 aa8.61□□□□□ -1.03
CPSF1-204ENST00000529288 FAM213BQ8TBF2 198 aa8.61□□□□□ -1.03
CPSF1-204ENST00000529288 SFRP2Q96HF1 295 aa8.61□□□□□ -1.03
CPSF1-204ENST00000529288 KLK12Q9UKR0 248 aa8.61□□□□□ -1.03
CPSF1-204ENST00000529288 DNAH8Q96JB1 4490 aa8.6□□□□□ -1.03
CPSF1-204ENST00000529288 A0A087WX48 190 aa8.6□□□□□ -1.03
CPSF1-204ENST00000529288 RBFOX3A6NFN3 312 aa8.6□□□□□ -1.03
CPSF1-204ENST00000529288 TMEM262E9PQX1 116 aa8.6□□□□□ -1.03
CPSF1-204ENST00000529288 EIF5AP63241 154 aaKnown RBP8.6□□□□□ -1.03
CPSF1-204ENST00000529288 LINC01620Q4KN68 170 aa8.6□□□□□ -1.03
CPSF1-204ENST00000529288 AKAP14Q86UN6 197 aa8.6□□□□□ -1.03
CPSF1-204ENST00000529288 ZFP82Q8N141 532 aa8.6□□□□□ -1.03
CPSF1-204ENST00000529288 C9orf62Q8N4C0 152 aa8.6□□□□□ -1.03
CPSF1-204ENST00000529288 SFT2D1Q8WV19 159 aa8.6□□□□□ -1.03
CPSF1-204ENST00000529288 UBE2WQ96B02 151 aa8.6□□□□□ -1.03
CPSF1-204ENST00000529288 RMI2Q96E14 147 aa8.6□□□□□ -1.03
CPSF1-204ENST00000529288 DNAJC30Q96LL9 226 aa8.6□□□□□ -1.03
CPSF1-204ENST00000529288 PAGE4O60829 102 aa8.59□□□□□ -1.03
CPSF1-204ENST00000529288 SSTP61278 116 aa8.59□□□□□ -1.03
CPSF1-204ENST00000529288 RPL36AP83881 106 aaKnown RBP8.59□□□□□ -1.03
CPSF1-204ENST00000529288 ZNF674Q2M3X9 581 aa8.59□□□□□ -1.03
CPSF1-204ENST00000529288 DNLZQ5SXM8 178 aa8.59□□□□□ -1.03
CPSF1-204ENST00000529288 NIT1Q86X76 327 aa8.59□□□□□ -1.03
CPSF1-204ENST00000529288 RPL36ALQ969Q0 106 aaKnown RBP8.59□□□□□ -1.03
CPSF1-204ENST00000529288 COX11Q9Y6N1 276 aa8.59□□□□□ -1.03
CPSF1-204ENST00000529288 J3QL48 77 aa8.58□□□□□ -1.04
CPSF1-204ENST00000529288 LTAP01374 205 aa8.58□□□□□ -1.04
CPSF1-204ENST00000529288 CCL20P78556 96 aa8.58□□□□□ -1.04
CPSF1-204ENST00000529288 LINC01559Q495D7 138 aa8.58□□□□□ -1.04
CPSF1-204ENST00000529288 COX8CQ7Z4L0 72 aa8.58□□□□□ -1.04
CPSF1-204ENST00000529288 TRAV1-1A0A0B4J248 108 aa8.57□□□□□ -1.04
CPSF1-204ENST00000529288 MUC21A0A0G2JKD1 596 aa8.57□□□□□ -1.04
CPSF1-204ENST00000529288 MUC21A0A140T8X8 626 aa8.57□□□□□ -1.04
CPSF1-204ENST00000529288 H2AFB1P0C5Y9 115 aa8.57□□□□□ -1.04
CPSF1-204ENST00000529288 SULT1A2P50226 295 aa8.57□□□□□ -1.04
CPSF1-204ENST00000529288 RPL19P84098 196 aaKnown RBP8.57□□□□□ -1.04
CPSF1-204ENST00000529288 ELOBQ15370 118 aa8.57□□□□□ -1.04
CPSF1-204ENST00000529288 ZNF56Q15929 161 aa8.57□□□□□ -1.04
CPSF1-204ENST00000529288 SLC51BQ86UW2 128 aa8.57□□□□□ -1.04
CPSF1-204ENST00000529288 TCEAL7Q9BRU2 100 aa8.57□□□□□ -1.04
CPSF1-204ENST00000529288 TRBV7-3A0A075B6L6 115 aa8.56□□□□□ -1.04
CPSF1-204ENST00000529288 TRBV6-1A0A0K0K1D8 114 aa8.56□□□□□ -1.04
CPSF1-204ENST00000529288 F5H697 171 aa8.56□□□□□ -1.04
CPSF1-204ENST00000529288 PLA2G1BP04054 148 aaKnown RBP8.56□□□□□ -1.04
CPSF1-204ENST00000529288 PRR27Q6MZM9 219 aa8.56□□□□□ -1.04
CPSF1-204ENST00000529288 LINC00528Q8N1L1 170 aa8.56□□□□□ -1.04
CPSF1-204ENST00000529288 Q8N976 141 aa8.56□□□□□ -1.04
CPSF1-204ENST00000529288 SRRM2Q9UQ35 2752 aaKnown RBP8.55□□□□□ -1.04
CPSF1-204ENST00000529288 TRBV10-1A0A0K0K1A3 114 aa8.55□□□□□ -1.04
CPSF1-204ENST00000529288 SCO2A0A1W2PP80 73 aa8.55□□□□□ -1.04
CPSF1-204ENST00000529288 RAB5CP51148 216 aa8.55□□□□□ -1.04
CPSF1-204ENST00000529288 UBE2D3P61077 147 aa8.55□□□□□ -1.04
CPSF1-204ENST00000529288 UBE2D2P62837 147 aa8.55□□□□□ -1.04
CPSF1-204ENST00000529288 BAGE2Q86Y30 109 aa8.55□□□□□ -1.04
CPSF1-204ENST00000529288 OR10AG1Q8NH19 301 aa8.55□□□□□ -1.04
CPSF1-204ENST00000529288 MYCBP2O75592 4640 aa8.55□□□□□ -1.04
CPSF1-204ENST00000529288 CRPP02741 224 aa8.54□□□□□ -1.04
CPSF1-204ENST00000529288 S100A9P06702 114 aaKnown RBP8.54□□□□□ -1.04
CPSF1-204ENST00000529288 RAB4BP61018 213 aa8.54□□□□□ -1.04
CPSF1-204ENST00000529288 SPANXN1Q5VSR9 72 aa8.54□□□□□ -1.04
CPSF1-204ENST00000529288 C15orf54Q8N8G6 183 aa8.54□□□□□ -1.04
CPSF1-204ENST00000529288 NKX2-5P52952 324 aaPredicted RBP8.53□□□□□ -1.04
CPSF1-204ENST00000529288 EIF5AL1Q6IS14 154 aaKnown RBP8.53□□□□□ -1.04
CPSF1-204ENST00000529288 SREK1IP1Q8N9Q2 155 aaPredicted RBP8.53□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 107.1 ms