RNA–Protein interactions for RNA: ENST00000519664.1

SYNPO-204, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 4,571 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-204ENST00000519664 C12orf74Q32Q52 190 aa9.05□□□□□ -0.96
SYNPO-204ENST00000519664 MAP1AP78559 2803 aaPredicted RBP9.05□□□□□ -0.96
SYNPO-204ENST00000519664 INSP01308 110 aa9.05□□□□□ -0.96
SYNPO-204ENST00000519664 ATG2AQ2TAZ0 1938 aa9.04□□□□□ -0.96
SYNPO-204ENST00000519664 PRSS29PA6NIE9 313 aa9.04□□□□□ -0.96
SYNPO-204ENST00000519664 ZNF80P51504 273 aaPredicted RBP9.04□□□□□ -0.96
SYNPO-204ENST00000519664 PMVKQ15126 192 aa9.04□□□□□ -0.96
SYNPO-204ENST00000519664 LY6G5BQ8NDX9 201 aa9.04□□□□□ -0.96
SYNPO-204ENST00000519664 COPS9Q8WXC6 57 aa9.04□□□□□ -0.96
SYNPO-204ENST00000519664 C2orf70A6NJV1 201 aa9.04□□□□□ -0.96
SYNPO-204ENST00000519664 ATXN8Q156A1 80 aa9.04□□□□□ -0.96
SYNPO-204ENST00000519664 TRPT1Q86TN4 253 aaKnown RBP9.04□□□□□ -0.96
SYNPO-204ENST00000519664 TP53TG3Q9ULZ0 132 aa9.04□□□□□ -0.96
SYNPO-204ENST00000519664 PRIMA1Q86XR5 153 aa9.04□□□□□ -0.96
SYNPO-204ENST00000519664 ZNRF2Q8NHG8 242 aa9.04□□□□□ -0.96
SYNPO-204ENST00000519664 LINC00574Q9H8X3 128 aa9.04□□□□□ -0.96
SYNPO-204ENST00000519664 WI2-2373I1.2A0A1W2PRP0 233 aa9.03□□□□□ -0.96
SYNPO-204ENST00000519664 IGLL5B9A064 214 aa9.03□□□□□ -0.96
SYNPO-204ENST00000519664 INS-IGF2F8WCM5 200 aa9.03□□□□□ -0.96
SYNPO-204ENST00000519664 HOXD3P31249 432 aaPredicted RBP9.03□□□□□ -0.96
SYNPO-204ENST00000519664 SPATA12Q7Z6I5 190 aa9.03□□□□□ -0.96
SYNPO-204ENST00000519664 C19orf71A6NCJ1 209 aa9.03□□□□□ -0.96
SYNPO-204ENST00000519664 VWC2LB2RUY7 222 aa9.03□□□□□ -0.96
SYNPO-204ENST00000519664 C2orf82Q6UX34 121 aa9.03□□□□□ -0.96
SYNPO-204ENST00000519664 PLEKHB2Q96CS7 222 aa9.03□□□□□ -0.96
SYNPO-204ENST00000519664 A0A087WX48 190 aa9.03□□□□□ -0.96
SYNPO-204ENST00000519664 GATA3P23771 443 aa9.03□□□□□ -0.96
SYNPO-204ENST00000519664 C5orf56Q8N8D9 126 aa9.03□□□□□ -0.96
SYNPO-204ENST00000519664 HERV-K104P63124 156 aa9.02□□□□□ -0.96
SYNPO-204ENST00000519664 APRG1Q8IVJ8 170 aa9.02□□□□□ -0.96
SYNPO-204ENST00000519664 CELSR3Q9NYQ7 3312 aa9.02□□□□□ -0.97
SYNPO-204ENST00000519664 TRAV16A0A0A6YYK6 109 aaPredicted RBP9.02□□□□□ -0.97
SYNPO-204ENST00000519664 HLA-DRB4P13762 266 aa9.02□□□□□ -0.97
SYNPO-204ENST00000519664 MALP21145 153 aa9.02□□□□□ -0.97
SYNPO-204ENST00000519664 SPANXDQ9BXN6 97 aa9.02□□□□□ -0.97
SYNPO-204ENST00000519664 HLA-DRB4X5D2U9 266 aa9.02□□□□□ -0.97
SYNPO-204ENST00000519664 MYMXA0A1B0GTQ4 84 aa9.02□□□□□ -0.97
SYNPO-204ENST00000519664 PAX4O43316 350 aa9.02□□□□□ -0.97
SYNPO-204ENST00000519664 MGAQ8IWI9 3026 aa9.02□□□□□ -0.97
SYNPO-204ENST00000519664 LINC01619G3V211 115 aa9.01□□□□□ -0.97
SYNPO-204ENST00000519664 C19orf84I3L1E1 186 aa9.01□□□□□ -0.97
SYNPO-204ENST00000519664 SLURP1P55000 103 aa9.01□□□□□ -0.97
SYNPO-204ENST00000519664 JPT2Q9H910 190 aa9.01□□□□□ -0.97
SYNPO-204ENST00000519664 FLNBO75369 2602 aaKnown RBP9.01□□□□□ -0.97
SYNPO-204ENST00000519664 TRBV25-1A0A075B6N4 114 aa9.01□□□□□ -0.97
SYNPO-204ENST00000519664 TRAV8-3A0A0A6YYJ7 113 aa9.01□□□□□ -0.97
SYNPO-204ENST00000519664 FOXI1Q12951 378 aa9□□□□□ -0.97
SYNPO-204ENST00000519664 MLST8Q9BVC4 326 aa9□□□□□ -0.97
SYNPO-204ENST00000519664 I3L3M4 83 aa9□□□□□ -0.97
SYNPO-204ENST00000519664 CDSNQ15517 529 aa9□□□□□ -0.97
SYNPO-204ENST00000519664 SIRPDQ9H106 197 aa9□□□□□ -0.97
SYNPO-204ENST00000519664 EDA2RQ9HAV5 297 aa9□□□□□ -0.97
SYNPO-204ENST00000519664 RPL39P62891 51 aaKnown RBP9□□□□□ -0.97
SYNPO-204ENST00000519664 MORN3Q6PF18 240 aaPredicted RBP9□□□□□ -0.97
SYNPO-204ENST00000519664 SPAG8Q99932 426 aaPredicted RBP9□□□□□ -0.97
SYNPO-204ENST00000519664 RNF183Q96D59 192 aa9□□□□□ -0.97
SYNPO-204ENST00000519664 RNF114Q9Y508 228 aa9□□□□□ -0.97
SYNPO-204ENST00000519664 IGF1P05019 195 aa8.99□□□□□ -0.97
SYNPO-204ENST00000519664 LMO4P61968 165 aa8.99□□□□□ -0.97
SYNPO-204ENST00000519664 C6orf226Q5I0X4 101 aa8.99□□□□□ -0.97
SYNPO-204ENST00000519664 A0A096LPF7 62 aa8.99□□□□□ -0.97
SYNPO-204ENST00000519664 C10orf105Q8TEF2 133 aa8.99□□□□□ -0.97
SYNPO-204ENST00000519664 VCANP13611 3396 aa8.99□□□□□ -0.97
SYNPO-204ENST00000519664 FXYD2P54710 66 aa8.99□□□□□ -0.97
SYNPO-204ENST00000519664 HIGD1BQ9P298 99 aa8.99□□□□□ -0.97
SYNPO-204ENST00000519664 A0A1B0GXF2 115 aa8.98□□□□□ -0.97
SYNPO-204ENST00000519664 H3BMM0 161 aa8.98□□□□□ -0.97
SYNPO-204ENST00000519664 FBXL19-AS1Q494R0 122 aa8.98□□□□□ -0.97
SYNPO-204ENST00000519664 GATD1Q8NB37 220 aa8.98□□□□□ -0.97
SYNPO-204ENST00000519664 UBE2WQ96B02 151 aa8.98□□□□□ -0.97
SYNPO-204ENST00000519664 SPANXCQ9NY87 97 aa8.98□□□□□ -0.97
SYNPO-204ENST00000519664 J3QQQ9 107 aa8.98□□□□□ -0.97
SYNPO-204ENST00000519664 MBD6Q96DN6 1003 aa8.98□□□□□ -0.97
SYNPO-204ENST00000519664 CCDC140Q96MF4 163 aa8.98□□□□□ -0.97
SYNPO-204ENST00000519664 SLC25A20O43772 301 aa8.98□□□□□ -0.97
SYNPO-204ENST00000519664 PFN2P35080 140 aa8.98□□□□□ -0.97
SYNPO-204ENST00000519664 VPREB3Q9UKI3 123 aa8.98□□□□□ -0.97
SYNPO-204ENST00000519664 SZT2Q5T011 3432 aa8.98□□□□□ -0.97
SYNPO-204ENST00000519664 DNAH14Q0VDD8 3507 aa8.97□□□□□ -0.97
SYNPO-204ENST00000519664 IGKV2D-29A0A075B6S2 120 aaPredicted RBP8.97□□□□□ -0.97
SYNPO-204ENST00000519664 IGKV2-29A2NJV5 120 aaPredicted RBP8.97□□□□□ -0.97
SYNPO-204ENST00000519664 C20orf78Q9BR46 151 aa8.97□□□□□ -0.97
SYNPO-204ENST00000519664 TEN1Q86WV5 123 aa8.97□□□□□ -0.97
SYNPO-204ENST00000519664 TMEM126AQ9H061 195 aa8.97□□□□□ -0.97
SYNPO-204ENST00000519664 NDUFA12Q9UI09 145 aa8.97□□□□□ -0.97
SYNPO-204ENST00000519664 LAMA1P25391 3075 aa8.97□□□□□ -0.97
SYNPO-204ENST00000519664 RBAKDNA6NC62 111 aa8.97□□□□□ -0.97
SYNPO-204ENST00000519664 CRIP1P50238 77 aa8.97□□□□□ -0.97
SYNPO-204ENST00000519664 HIST2H2BDQ6DRA6 164 aa8.97□□□□□ -0.97
SYNPO-204ENST00000519664 C15orf53Q8NAA6 179 aa8.97□□□□□ -0.97
SYNPO-204ENST00000519664 DPH3Q96FX2 82 aa8.97□□□□□ -0.97
SYNPO-204ENST00000519664 ELANEP08246 267 aa8.97□□□□□ -0.97
SYNPO-204ENST00000519664 ATP6V0E2Q8NHE4 81 aa8.97□□□□□ -0.97
SYNPO-204ENST00000519664 CPAMD8Q8IZJ3 1885 aa8.96□□□□□ -0.98
SYNPO-204ENST00000519664 Q8N1Y9 231 aa8.96□□□□□ -0.98
SYNPO-204ENST00000519664 MRPL53Q96EL3 112 aaKnown RBP8.96□□□□□ -0.98
SYNPO-204ENST00000519664 A0A0J9YXV3 536 aa8.96□□□□□ -0.98
SYNPO-204ENST00000519664 SUMO4Q6EEV6 95 aa8.96□□□□□ -0.98
SYNPO-204ENST00000519664 RASL10AQ92737 203 aa8.96□□□□□ -0.98
SYNPO-204ENST00000519664 FGF6P10767 208 aa8.95□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 43.1 ms