RNA–Protein interactions for RNA: ENST00000512632.5

LIMCH1-215, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 4,792 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-215ENST00000512632 KIR2DL4Q99706 377 aa6.93□□□□□ -1.3
LIMCH1-215ENST00000512632 IGHG2P01859 326 aa6.93□□□□□ -1.3
LIMCH1-215ENST00000512632 FAM19A4Q96LR4 140 aa6.93□□□□□ -1.3
LIMCH1-215ENST00000512632 DAZ1Q9NQZ3 744 aaKnown RBP6.93□□□□□ -1.3
LIMCH1-215ENST00000512632 C10orf99Q6UWK7 81 aa6.92□□□□□ -1.3
LIMCH1-215ENST00000512632 MDFICQ9P1T7 246 aa6.92□□□□□ -1.3
LIMCH1-215ENST00000512632 POLQO75417 2590 aa6.92□□□□□ -1.3
LIMCH1-215ENST00000512632 CACNA1AO00555 2505 aa6.92□□□□□ -1.3
LIMCH1-215ENST00000512632 IGLV4-69A0A075B6H9 119 aa6.92□□□□□ -1.3
LIMCH1-215ENST00000512632 IGHV3-64A0A075B6Q5 118 aa6.92□□□□□ -1.3
LIMCH1-215ENST00000512632 COX6B1P14854 86 aa6.92□□□□□ -1.3
LIMCH1-215ENST00000512632 POLR2KP53803 58 aaKnown RBP6.92□□□□□ -1.3
LIMCH1-215ENST00000512632 USP9XQ93008 2570 aaPredicted RBP6.92□□□□□ -1.3
LIMCH1-215ENST00000512632 IGIPA6NJ69 53 aa6.92□□□□□ -1.3
LIMCH1-215ENST00000512632 VCYO14598 125 aa6.92□□□□□ -1.3
LIMCH1-215ENST00000512632 PPP1R17O96001 155 aa6.92□□□□□ -1.3
LIMCH1-215ENST00000512632 PMVKQ15126 192 aa6.92□□□□□ -1.3
LIMCH1-215ENST00000512632 CLEC2AQ6UVW9 174 aa6.92□□□□□ -1.3
LIMCH1-215ENST00000512632 TMEM238LA0A1B0GVL6 79 aa6.92□□□□□ -1.3
LIMCH1-215ENST00000512632 A6NJY4 79 aa6.92□□□□□ -1.3
LIMCH1-215ENST00000512632 NDUFS8O00217 210 aa6.92□□□□□ -1.3
LIMCH1-215ENST00000512632 GNLYP22749 145 aa6.92□□□□□ -1.3
LIMCH1-215ENST00000512632 TSPEAR-AS2P59090 65 aa6.92□□□□□ -1.3
LIMCH1-215ENST00000512632 ATP6V0BQ99437 205 aa6.92□□□□□ -1.3
LIMCH1-215ENST00000512632 ACACBO00763 2458 aa6.91□□□□□ -1.3
LIMCH1-215ENST00000512632 VPS13CQ709C8 3753 aa6.91□□□□□ -1.3
LIMCH1-215ENST00000512632 A0A0J9YY99 117 aa6.91□□□□□ -1.3
LIMCH1-215ENST00000512632 TSPAN13O95857 204 aa6.91□□□□□ -1.3
LIMCH1-215ENST00000512632 MED14OSP0DP75 135 aa6.91□□□□□ -1.3
LIMCH1-215ENST00000512632 HTN1P15515 57 aa6.91□□□□□ -1.3
LIMCH1-215ENST00000512632 CRIP2P52943 208 aaPredicted RBP6.91□□□□□ -1.3
LIMCH1-215ENST00000512632 HERVK_113P61574 105 aa6.91□□□□□ -1.3
LIMCH1-215ENST00000512632 ZNF56Q15929 161 aa6.91□□□□□ -1.3
LIMCH1-215ENST00000512632 SMCPP49901 116 aaPredicted RBP6.91□□□□□ -1.3
LIMCH1-215ENST00000512632 ZNRF2Q8NHG8 242 aa6.91□□□□□ -1.3
LIMCH1-215ENST00000512632 IGHV4OR15-8A0A075B7B6 117 aa6.91□□□□□ -1.3
LIMCH1-215ENST00000512632 A0A087WW49 117 aa6.91□□□□□ -1.3
LIMCH1-215ENST00000512632 KLLNB2CW77 178 aa6.91□□□□□ -1.3
LIMCH1-215ENST00000512632 LINC01619G3V211 115 aa6.91□□□□□ -1.3
LIMCH1-215ENST00000512632 UBE2D1P51668 147 aa6.91□□□□□ -1.3
LIMCH1-215ENST00000512632 DLX4Q92988 240 aaPredicted RBP6.91□□□□□ -1.3
LIMCH1-215ENST00000512632 A6NDX4 124 aa6.9□□□□□ -1.3
LIMCH1-215ENST00000512632 APRG1Q8IVJ8 170 aa6.9□□□□□ -1.3
LIMCH1-215ENST00000512632 DUX5Q96PT3 197 aa6.9□□□□□ -1.3
LIMCH1-215ENST00000512632 SPINK13Q1W4C9 94 aa6.9□□□□□ -1.3
LIMCH1-215ENST00000512632 IGHV4-30-2A0A087WSY4 118 aa6.9□□□□□ -1.31
LIMCH1-215ENST00000512632 AVPP01185 164 aa6.9□□□□□ -1.31
LIMCH1-215ENST00000512632 ID1P41134 155 aa6.9□□□□□ -1.31
LIMCH1-215ENST00000512632 H7C2G1 150 aa6.89□□□□□ -1.31
LIMCH1-215ENST00000512632 DCANP1Q8TF63 244 aa6.89□□□□□ -1.31
LIMCH1-215ENST00000512632 FAM208BQ5VWN6 2430 aa6.89□□□□□ -1.31
LIMCH1-215ENST00000512632 SCGB1C2P0DMR2 95 aa6.89□□□□□ -1.31
LIMCH1-215ENST00000512632 PIMREGQ9BSJ6 248 aa6.89□□□□□ -1.31
LIMCH1-215ENST00000512632 CELSR2Q9HCU4 2923 aa6.89□□□□□ -1.31
LIMCH1-215ENST00000512632 C2CD3Q4AC94 2353 aa6.89□□□□□ -1.31
LIMCH1-215ENST00000512632 ATP5J2P56134 94 aa6.89□□□□□ -1.31
LIMCH1-215ENST00000512632 CENPEQ02224 2701 aa6.89□□□□□ -1.31
LIMCH1-215ENST00000512632 CFAP126Q5VTH2 177 aa6.89□□□□□ -1.31
LIMCH1-215ENST00000512632 NDUFA11Q86Y39 141 aa6.89□□□□□ -1.31
LIMCH1-215ENST00000512632 Q8N1Y9 231 aa6.89□□□□□ -1.31
LIMCH1-215ENST00000512632 SYT8Q8NBV8 401 aa6.89□□□□□ -1.31
LIMCH1-215ENST00000512632 CRYBG3Q68DQ2 2970 aa6.88□□□□□ -1.31
LIMCH1-215ENST00000512632 NXPH4O95158 308 aa6.88□□□□□ -1.31
LIMCH1-215ENST00000512632 NFE4Q86UQ8 179 aa6.88□□□□□ -1.31
LIMCH1-215ENST00000512632 RAX2Q96IS3 184 aa6.88□□□□□ -1.31
LIMCH1-215ENST00000512632 MYO9AB2RTY4 2548 aa6.88□□□□□ -1.31
LIMCH1-215ENST00000512632 J3QQQ9 107 aa6.88□□□□□ -1.31
LIMCH1-215ENST00000512632 CFC1BP0CG36 223 aa6.88□□□□□ -1.31
LIMCH1-215ENST00000512632 CFC1P0CG37 223 aa6.88□□□□□ -1.31
LIMCH1-215ENST00000512632 FOXI1Q12951 378 aa6.88□□□□□ -1.31
LIMCH1-215ENST00000512632 PAPPA-AS1Q5QFB9 102 aa6.88□□□□□ -1.31
LIMCH1-215ENST00000512632 IGHV3-73A0A0B4J1V6 119 aa6.88□□□□□ -1.31
LIMCH1-215ENST00000512632 LGALS3P17931 250 aaKnown RBP6.88□□□□□ -1.31
LIMCH1-215ENST00000512632 IGLV1-40P01703 118 aa6.88□□□□□ -1.31
LIMCH1-215ENST00000512632 TRBV7-9A0A0J9YWB2 115 aa6.87□□□□□ -1.31
LIMCH1-215ENST00000512632 TCL1BO95988 128 aa6.87□□□□□ -1.31
LIMCH1-215ENST00000512632 ZNF876PQ49A33 203 aa6.87□□□□□ -1.31
LIMCH1-215ENST00000512632 POM121L12Q8N7R1 296 aa6.87□□□□□ -1.31
LIMCH1-215ENST00000512632 C10orf105Q8TEF2 133 aa6.87□□□□□ -1.31
LIMCH1-215ENST00000512632 CCL19Q99731 98 aa6.87□□□□□ -1.31
LIMCH1-215ENST00000512632 PKD1L2Q7Z442 2459 aa6.87□□□□□ -1.31
LIMCH1-215ENST00000512632 FLNCQ14315 2725 aa6.87□□□□□ -1.31
LIMCH1-215ENST00000512632 IGHV3-16A0A0C4DH30 117 aa6.87□□□□□ -1.31
LIMCH1-215ENST00000512632 H3BUA1 57 aa6.87□□□□□ -1.31
LIMCH1-215ENST00000512632 TMEM141Q96I45 108 aa6.87□□□□□ -1.31
LIMCH1-215ENST00000512632 TIMM17AQ99595 171 aa6.87□□□□□ -1.31
LIMCH1-215ENST00000512632 SPATA25Q9BR10 227 aa6.87□□□□□ -1.31
LIMCH1-215ENST00000512632 ZNF580Q9UK33 172 aa6.87□□□□□ -1.31
LIMCH1-215ENST00000512632 TRAV2A0A0B4J234 112 aa6.87□□□□□ -1.31
LIMCH1-215ENST00000512632 A0A0J9YXV3 536 aa6.87□□□□□ -1.31
LIMCH1-215ENST00000512632 TRBV27A0A0K0K1C4 114 aa6.87□□□□□ -1.31
LIMCH1-215ENST00000512632 M0QY20 66 aa6.87□□□□□ -1.31
LIMCH1-215ENST00000512632 IGHV4-59P01825 116 aa6.87□□□□□ -1.31
LIMCH1-215ENST00000512632 PRM2P04554 102 aa6.87□□□□□ -1.31
LIMCH1-215ENST00000512632 P0DMU3 169 aa6.87□□□□□ -1.31
LIMCH1-215ENST00000512632 FAM231AP0DMU4 169 aa6.87□□□□□ -1.31
LIMCH1-215ENST00000512632 FAM231CP0DMU5 169 aa6.87□□□□□ -1.31
LIMCH1-215ENST00000512632 SYNJ2BPP57105 145 aa6.87□□□□□ -1.31
LIMCH1-215ENST00000512632 SLC25A29Q8N8R3 303 aa6.87□□□□□ -1.31
LIMCH1-215ENST00000512632 ZANQ9Y493 2812 aa6.87□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 188.6 ms