RNA–Protein interactions for RNA: ENST00000512228.5

LIMCH1-214, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 4

Gene LIMCH1, Length 473 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-214ENST00000512228 MAP1LC3B2A6NCE7 125 aa7.37□□□□□ -1.23
LIMCH1-214ENST00000512228 S100A4P26447 101 aaKnown RBP7.37□□□□□ -1.23
LIMCH1-214ENST00000512228 PIK3CD-AS1Q5SR53 167 aa7.37□□□□□ -1.23
LIMCH1-214ENST00000512228 BAALCQ8WXS3 180 aa7.37□□□□□ -1.23
LIMCH1-214ENST00000512228 HIST1H2BAQ96A08 127 aa7.37□□□□□ -1.23
LIMCH1-214ENST00000512228 MAP1LC3BQ9GZQ8 125 aa7.37□□□□□ -1.23
LIMCH1-214ENST00000512228 PAGE4O60829 102 aa7.36□□□□□ -1.23
LIMCH1-214ENST00000512228 LTAP01374 205 aa7.36□□□□□ -1.23
LIMCH1-214ENST00000512228 RPL19P84098 196 aaKnown RBP7.36□□□□□ -1.23
LIMCH1-214ENST00000512228 AKR1C8PQ5T2L2 129 aa7.36□□□□□ -1.23
LIMCH1-214ENST00000512228 FAM74A4Q5TZK3 123 aa7.36□□□□□ -1.23
LIMCH1-214ENST00000512228 SFRP2Q96HF1 295 aa7.36□□□□□ -1.23
LIMCH1-214ENST00000512228 HERC1Q15751 4861 aa7.36□□□□□ -1.23
LIMCH1-214ENST00000512228 MUC21A0A0G2JKD1 596 aa7.35□□□□□ -1.23
LIMCH1-214ENST00000512228 MUC21A0A140T8X8 626 aa7.35□□□□□ -1.23
LIMCH1-214ENST00000512228 A0A1B0GV50 99 aa7.35□□□□□ -1.23
LIMCH1-214ENST00000512228 M0R381 172 aa7.35□□□□□ -1.23
LIMCH1-214ENST00000512228 BCL2L11O43521 198 aa7.35□□□□□ -1.23
LIMCH1-214ENST00000512228 PFDN1O60925 122 aa7.35□□□□□ -1.23
LIMCH1-214ENST00000512228 LINC01559Q495D7 138 aa7.35□□□□□ -1.23
LIMCH1-214ENST00000512228 FAM162BQ5T6X4 162 aa7.35□□□□□ -1.23
LIMCH1-214ENST00000512228 CST9LP1Q5W188 147 aa7.35□□□□□ -1.23
LIMCH1-214ENST00000512228 NTN5Q8WTR8 489 aaPredicted RBP7.35□□□□□ -1.23
LIMCH1-214ENST00000512228 FRZBQ92765 325 aa7.35□□□□□ -1.23
LIMCH1-214ENST00000512228 ZFP30Q9Y2G7 519 aa7.35□□□□□ -1.23
LIMCH1-214ENST00000512228 IGLV2-33A0A075B6J2 118 aaPredicted RBP7.34□□□□□ -1.23
LIMCH1-214ENST00000512228 TRBV6-1A0A0K0K1D8 114 aa7.34□□□□□ -1.23
LIMCH1-214ENST00000512228 LAGE3Q14657 143 aa7.34□□□□□ -1.23
LIMCH1-214ENST00000512228 EIF5AL1Q6IS14 154 aaKnown RBP7.34□□□□□ -1.23
LIMCH1-214ENST00000512228 TMUB2Q71RG4 321 aa7.34□□□□□ -1.23
LIMCH1-214ENST00000512228 NIT1Q86X76 327 aa7.34□□□□□ -1.23
LIMCH1-214ENST00000512228 TMEM70Q9BUB7 260 aa7.34□□□□□ -1.23
LIMCH1-214ENST00000512228 ZNF471Q9BX82 626 aaPredicted RBP7.34□□□□□ -1.23
LIMCH1-214ENST00000512228 NKX6-2Q9C056 277 aaPredicted RBP7.34□□□□□ -1.23
LIMCH1-214ENST00000512228 VPS13BQ7Z7G8 4022 aa7.34□□□□□ -1.24
LIMCH1-214ENST00000512228 A0A1B0GVG6 124 aa7.33□□□□□ -1.24
LIMCH1-214ENST00000512228 SEC11BP0C7V7 166 aa7.33□□□□□ -1.24
LIMCH1-214ENST00000512228 TPT1P13693 172 aaKnown RBP7.33□□□□□ -1.24
LIMCH1-214ENST00000512228 CCL20P78556 96 aa7.33□□□□□ -1.24
LIMCH1-214ENST00000512228 Q6ZSA8 131 aa7.33□□□□□ -1.24
LIMCH1-214ENST00000512228 OR10AG1Q8NH19 301 aa7.33□□□□□ -1.24
LIMCH1-214ENST00000512228 MBD3L1Q8WWY6 194 aa7.33□□□□□ -1.24
LIMCH1-214ENST00000512228 FMC1Q96HJ9 113 aa7.33□□□□□ -1.24
LIMCH1-214ENST00000512228 MLST8Q9BVC4 326 aa7.33□□□□□ -1.24
LIMCH1-214ENST00000512228 KLK12Q9UKR0 248 aa7.33□□□□□ -1.24
LIMCH1-214ENST00000512228 PHLDA3Q9Y5J5 127 aa7.33□□□□□ -1.24
LIMCH1-214ENST00000512228 SCO2A0A1W2PP80 73 aa7.32□□□□□ -1.24
LIMCH1-214ENST00000512228 UMAD1C9J7I0 102 aa7.32□□□□□ -1.24
LIMCH1-214ENST00000512228 UBE2D3P61077 147 aa7.32□□□□□ -1.24
LIMCH1-214ENST00000512228 SSTP61278 116 aa7.32□□□□□ -1.24
LIMCH1-214ENST00000512228 UBE2D2P62837 147 aa7.32□□□□□ -1.24
LIMCH1-214ENST00000512228 SLC51BQ86UW2 128 aa7.32□□□□□ -1.24
LIMCH1-214ENST00000512228 STOML3Q8TAV4 291 aa7.32□□□□□ -1.24
LIMCH1-214ENST00000512228 SFT2D1Q8WV19 159 aa7.32□□□□□ -1.24
LIMCH1-214ENST00000512228 TRAV8-3A0A0A6YYJ7 113 aa7.31□□□□□ -1.24
LIMCH1-214ENST00000512228 UBE2G1P62253 170 aa7.31□□□□□ -1.24
LIMCH1-214ENST00000512228 ENHOQ6UWT2 76 aa7.31□□□□□ -1.24
LIMCH1-214ENST00000512228 SYT8Q8NBV8 401 aa7.31□□□□□ -1.24
LIMCH1-214ENST00000512228 FAM213BQ8TBF2 198 aa7.31□□□□□ -1.24
LIMCH1-214ENST00000512228 SSBP4Q9BWG4 385 aaPredicted RBP7.31□□□□□ -1.24
LIMCH1-214ENST00000512228 TM2D2Q9BX73 214 aa7.31□□□□□ -1.24
LIMCH1-214ENST00000512228 TRBV7-3A0A075B6L6 115 aa7.3□□□□□ -1.24
LIMCH1-214ENST00000512228 A0A087WWC5 75 aa7.3□□□□□ -1.24
LIMCH1-214ENST00000512228 FAM229AH3BQW9 127 aa7.3□□□□□ -1.24
LIMCH1-214ENST00000512228 RHODO00212 210 aa7.3□□□□□ -1.24
LIMCH1-214ENST00000512228 AKR1C3P42330 323 aa7.3□□□□□ -1.24
LIMCH1-214ENST00000512228 RAB5CP51148 216 aa7.3□□□□□ -1.24
LIMCH1-214ENST00000512228 KRTAP10-4P60372 401 aaPredicted RBP7.3□□□□□ -1.24
LIMCH1-214ENST00000512228 PRR27Q6MZM9 219 aa7.3□□□□□ -1.24
LIMCH1-214ENST00000512228 NTM-AS1Q6ZSK4 140 aa7.3□□□□□ -1.24
LIMCH1-214ENST00000512228 NEXN-AS1Q8NBZ9 246 aa7.3□□□□□ -1.24
LIMCH1-214ENST00000512228 UBE2WQ96B02 151 aa7.3□□□□□ -1.24
LIMCH1-214ENST00000512228 DERL1Q9BUN8 251 aa7.3□□□□□ -1.24
LIMCH1-214ENST00000512228 KIF25-AS1Q9Y6Z4 181 aa7.3□□□□□ -1.24
LIMCH1-214ENST00000512228 IGKV2D-24A0A075B6R9 120 aa7.29□□□□□ -1.24
LIMCH1-214ENST00000512228 BAGE2Q86Y30 109 aa7.29□□□□□ -1.24
LIMCH1-214ENST00000512228 ZFP82Q8N141 532 aa7.29□□□□□ -1.24
LIMCH1-214ENST00000512228 C9orf62Q8N4C0 152 aa7.29□□□□□ -1.24
LIMCH1-214ENST00000512228 OR10G8Q8NGN5 311 aa7.29□□□□□ -1.24
LIMCH1-214ENST00000512228 BOLA1Q9Y3E2 137 aa7.29□□□□□ -1.24
LIMCH1-214ENST00000512228 MYCBP2O75592 4640 aa7.29□□□□□ -1.24
LIMCH1-214ENST00000512228 SNAI2O43623 268 aa7.28□□□□□ -1.24
LIMCH1-214ENST00000512228 GZMBP10144 247 aa7.28□□□□□ -1.24
LIMCH1-214ENST00000512228 RAB4BP61018 213 aa7.28□□□□□ -1.24
LIMCH1-214ENST00000512228 ATRAIDQ6UW56 229 aa7.28□□□□□ -1.24
LIMCH1-214ENST00000512228 SCXQ7RTU7 201 aa7.28□□□□□ -1.24
LIMCH1-214ENST00000512228 TRBV6-8A0A0A6YYG3 113 aa7.27□□□□□ -1.25
LIMCH1-214ENST00000512228 TRBV10-1A0A0K0K1A3 114 aa7.27□□□□□ -1.25
LIMCH1-214ENST00000512228 RBFOX3A6NFN3 312 aa7.27□□□□□ -1.25
LIMCH1-214ENST00000512228 TMEM262E9PQX1 116 aa7.27□□□□□ -1.25
LIMCH1-214ENST00000512228 TEX46H3BTG2 121 aa7.27□□□□□ -1.25
LIMCH1-214ENST00000512228 IGLV2-8P01709 118 aa7.27□□□□□ -1.25
LIMCH1-214ENST00000512228 RPL36AP83881 106 aaKnown RBP7.27□□□□□ -1.25
LIMCH1-214ENST00000512228 MPV17L2Q567V2 206 aa7.27□□□□□ -1.25
LIMCH1-214ENST00000512228 KRTAP26-1Q6PEX3 210 aa7.27□□□□□ -1.25
LIMCH1-214ENST00000512228 LINC00528Q8N1L1 170 aa7.27□□□□□ -1.25
LIMCH1-214ENST00000512228 Q8N976 141 aa7.27□□□□□ -1.25
LIMCH1-214ENST00000512228 RPL36ALQ969Q0 106 aaKnown RBP7.27□□□□□ -1.25
LIMCH1-214ENST00000512228 TCEAL7Q9BRU2 100 aa7.27□□□□□ -1.25
LIMCH1-214ENST00000512228 SRRM2Q9UQ35 2752 aaKnown RBP7.27□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms