RNA–Protein interactions for RNA: ENST00000507257.5

NUP54-205, Transcript of nucleoporin 54, humanhuman

TSL 5

Gene NUP54, Length 1,938 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-205ENST00000507257 RHODO00212 210 aa13.31□□□□□ -0.28
NUP54-205ENST00000507257 SAA4P35542 130 aa13.31□□□□□ -0.28
NUP54-205ENST00000507257 RHOHQ15669 191 aa13.31□□□□□ -0.28
NUP54-205ENST00000507257 NSUN5P1Q3KNT7 163 aa13.31□□□□□ -0.28
NUP54-205ENST00000507257 TMEM223A0PJW6 202 aa13.3□□□□□ -0.28
NUP54-205ENST00000507257 GRNP28799 593 aaKnown RBP13.3□□□□□ -0.28
NUP54-205ENST00000507257 RPL13AP40429 203 aaKnown RBP13.3□□□□□ -0.28
NUP54-205ENST00000507257 PIEZO2Q9H5I5 2752 aa13.3□□□□□ -0.28
NUP54-205ENST00000507257 SDHAF1A6NFY7 115 aa13.29□□□□□ -0.28
NUP54-205ENST00000507257 EMP1P54849 157 aa13.29□□□□□ -0.28
NUP54-205ENST00000507257 RPL39P62891 51 aaKnown RBP13.29□□□□□ -0.28
NUP54-205ENST00000507257 ANKHD1Q8IWZ3 2542 aaKnown RBP13.29□□□□□ -0.28
NUP54-205ENST00000507257 C9JAW5 83 aa13.29□□□□□ -0.28
NUP54-205ENST00000507257 ATXN8Q156A1 80 aa13.28□□□□□ -0.28
NUP54-205ENST00000507257 UNQ9165/PRO28630Q6UXU0 137 aa13.28□□□□□ -0.28
NUP54-205ENST00000507257 MOB4Q9Y3A3 225 aa13.28□□□□□ -0.28
NUP54-205ENST00000507257 ABCA4P78363 2273 aa13.28□□□□□ -0.28
NUP54-205ENST00000507257 MGAQ8IWI9 3026 aa13.27□□□□□ -0.28
NUP54-205ENST00000507257 H3BUA1 57 aa13.27□□□□□ -0.28
NUP54-205ENST00000507257 EIF4EBP3O60516 100 aaPredicted RBP13.27□□□□□ -0.28
NUP54-205ENST00000507257 MDFICQ9P1T7 246 aa13.27□□□□□ -0.28
NUP54-205ENST00000507257 ACACAQ13085 2346 aa13.27□□□□□ -0.29
NUP54-205ENST00000507257 EP300Q09472 2414 aaPredicted RBP13.27□□□□□ -0.29
NUP54-205ENST00000507257 TRBV30A0A0K0K1B3 111 aa13.27□□□□□ -0.29
NUP54-205ENST00000507257 TACC2O95359 2948 aa13.27□□□□□ -0.29
NUP54-205ENST00000507257 NPFFO15130 113 aa13.26□□□□□ -0.29
NUP54-205ENST00000507257 FAM159AQ6UWV7 190 aa13.26□□□□□ -0.29
NUP54-205ENST00000507257 SPANXA1Q9NS26 97 aa13.26□□□□□ -0.29
NUP54-205ENST00000507257 M0R2P5 195 aa13.25□□□□□ -0.29
NUP54-205ENST00000507257 NHLRC4P0CG21 123 aaPredicted RBP13.25□□□□□ -0.29
NUP54-205ENST00000507257 GAGE2BQ13066 116 aa13.25□□□□□ -0.29
NUP54-205ENST00000507257 LINC01620Q4KN68 170 aa13.25□□□□□ -0.29
NUP54-205ENST00000507257 GAGE2EQ4V326 116 aa13.25□□□□□ -0.29
NUP54-205ENST00000507257 USMG5Q96IX5 58 aa13.25□□□□□ -0.29
NUP54-205ENST00000507257 GAGE2DQ9UEU5 116 aa13.25□□□□□ -0.29
NUP54-205ENST00000507257 SNCGO76070 127 aa13.25□□□□□ -0.29
NUP54-205ENST00000507257 ZNF22P17026 224 aaPredicted RBP13.24□□□□□ -0.29
NUP54-205ENST00000507257 GATA3P23771 443 aa13.24□□□□□ -0.29
NUP54-205ENST00000507257 TRPT1Q86TN4 253 aaKnown RBP13.24□□□□□ -0.29
NUP54-205ENST00000507257 Q8N1Y9 231 aa13.24□□□□□ -0.29
NUP54-205ENST00000507257 C9orf85Q96MD7 179 aa13.24□□□□□ -0.29
NUP54-205ENST00000507257 ODF3Q96PU9 254 aa13.24□□□□□ -0.29
NUP54-205ENST00000507257 TRBV10-2A0A0K0K1G8 114 aa13.23□□□□□ -0.29
NUP54-205ENST00000507257 MUSTN1Q8IVN3 82 aa13.23□□□□□ -0.29
NUP54-205ENST00000507257 RAX2Q96IS3 184 aa13.23□□□□□ -0.29
NUP54-205ENST00000507257 ANKRD11Q6UB99 2663 aaPredicted RBP13.23□□□□□ -0.29
NUP54-205ENST00000507257 F6UB75 175 aa13.23□□□□□ -0.29
NUP54-205ENST00000507257 TGFAP01135 160 aa13.23□□□□□ -0.29
NUP54-205ENST00000507257 NDUFV3P56181 108 aaKnown RBP13.23□□□□□ -0.29
NUP54-205ENST00000507257 DEFB1P60022 68 aa13.23□□□□□ -0.29
NUP54-205ENST00000507257 MRPL23Q16540 153 aaKnown RBP13.23□□□□□ -0.29
NUP54-205ENST00000507257 M0QY20 66 aa13.22□□□□□ -0.29
NUP54-205ENST00000507257 JPT2Q9H910 190 aa13.22□□□□□ -0.29
NUP54-205ENST00000507257 TRAV2A0A0B4J234 112 aa13.21□□□□□ -0.29
NUP54-205ENST00000507257 F5H697 171 aa13.21□□□□□ -0.29
NUP54-205ENST00000507257 TRBV12-3P01733 135 aa13.21□□□□□ -0.29
NUP54-205ENST00000507257 C20orf203Q8NBC4 194 aa13.21□□□□□ -0.29
NUP54-205ENST00000507257 NTN5Q8WTR8 489 aaPredicted RBP13.21□□□□□ -0.29
NUP54-205ENST00000507257 ID1P41134 155 aa13.2□□□□□ -0.3
NUP54-205ENST00000507257 RHPN1-AS1Q9BWJ2 59 aa13.2□□□□□ -0.3
NUP54-205ENST00000507257 A0A087WWL8 130 aa13.19□□□□□ -0.3
NUP54-205ENST00000507257 A0A0J9YXY3 114 aa13.19□□□□□ -0.3
NUP54-205ENST00000507257 IGHV3-16A0A0C4DH30 117 aa13.19□□□□□ -0.3
NUP54-205ENST00000507257 H3BT86 120 aa13.19□□□□□ -0.3
NUP54-205ENST00000507257 CCL21O00585 134 aa13.19□□□□□ -0.3
NUP54-205ENST00000507257 IFITM1P13164 125 aa13.19□□□□□ -0.3
NUP54-205ENST00000507257 TRAV8-4A0A0B4J246 113 aa13.18□□□□□ -0.3
NUP54-205ENST00000507257 TRAV4A0A0B4J268 109 aa13.18□□□□□ -0.3
NUP54-205ENST00000507257 K7EMT4 169 aa13.18□□□□□ -0.3
NUP54-205ENST00000507257 LMO4P61968 165 aa13.18□□□□□ -0.3
NUP54-205ENST00000507257 RPL11P62913 178 aaKnown RBP13.18□□□□□ -0.3
NUP54-205ENST00000507257 SPANXDQ9BXN6 97 aa13.18□□□□□ -0.3
NUP54-205ENST00000507257 SPANXCQ9NY87 97 aa13.18□□□□□ -0.3
NUP54-205ENST00000507257 PYGO1Q9Y3Y4 419 aa13.18□□□□□ -0.3
NUP54-205ENST00000507257 IGLV4-3A0A075B6K6 122 aa13.17□□□□□ -0.3
NUP54-205ENST00000507257 FAM240AA0A1B0GVK7 77 aa13.17□□□□□ -0.3
NUP54-205ENST00000507257 GAGE12JA6NER3 117 aa13.17□□□□□ -0.3
NUP54-205ENST00000507257 H3BMM0 161 aa13.17□□□□□ -0.3
NUP54-205ENST00000507257 GAGE7O76087 117 aa13.17□□□□□ -0.3
NUP54-205ENST00000507257 GAGE12FP0CL80 117 aa13.17□□□□□ -0.3
NUP54-205ENST00000507257 GAGE12GP0CL81 117 aa13.17□□□□□ -0.3
NUP54-205ENST00000507257 GAGE12IP0CL82 117 aa13.17□□□□□ -0.3
NUP54-205ENST00000507257 GAGE4Q13068 117 aa13.17□□□□□ -0.3
NUP54-205ENST00000507257 TTC32Q5I0X7 151 aa13.17□□□□□ -0.3
NUP54-205ENST00000507257 UBE2WQ96B02 151 aa13.17□□□□□ -0.3
NUP54-205ENST00000507257 LITAFQ99732 161 aa13.17□□□□□ -0.3
NUP54-205ENST00000507257 EDA2RQ9HAV5 297 aa13.17□□□□□ -0.3
NUP54-205ENST00000507257 DAZ1Q9NQZ3 744 aaKnown RBP13.17□□□□□ -0.3
NUP54-205ENST00000507257 ZNF256Q9Y2P7 627 aaPredicted RBP13.17□□□□□ -0.3
NUP54-205ENST00000507257 I3L3M4 83 aa13.17□□□□□ -0.3
NUP54-205ENST00000507257 K7ENP7 123 aa13.17□□□□□ -0.3
NUP54-205ENST00000507257 ADORA2A-AS1P86434 159 aa13.17□□□□□ -0.3
NUP54-205ENST00000507257 Q1RN00 199 aa13.17□□□□□ -0.3
NUP54-205ENST00000507257 SS18L2Q9UHA2 77 aa13.17□□□□□ -0.3
NUP54-205ENST00000507257 TRIAP1O43715 76 aa13.16□□□□□ -0.3
NUP54-205ENST00000507257 ELANEP08246 267 aa13.16□□□□□ -0.3
NUP54-205ENST00000507257 TCF15Q12870 199 aa13.16□□□□□ -0.3
NUP54-205ENST00000507257 TMEM219Q86XT9 240 aa13.16□□□□□ -0.3
NUP54-205ENST00000507257 IGHG2P01859 326 aa13.15□□□□□ -0.3
NUP54-205ENST00000507257 MRPS36P82909 103 aaKnown RBP13.15□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms