RNA–Protein interactions for RNA: ENST00000506098.5

NUP54-204, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 548 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-204ENST00000506098 Q6ZQT7 251 aa5.24□□□□□ -1.57
NUP54-204ENST00000506098 Q6ZWC4 215 aa5.24□□□□□ -1.57
NUP54-204ENST00000506098 ZNF575Q86XF7 245 aa5.24□□□□□ -1.57
NUP54-204ENST00000506098 C1orf158Q8N1D5 194 aa5.24□□□□□ -1.57
NUP54-204ENST00000506098 STPG4Q8N801 248 aa5.24□□□□□ -1.57
NUP54-204ENST00000506098 FRZBQ92765 325 aa5.24□□□□□ -1.57
NUP54-204ENST00000506098 PYGO2Q9BRQ0 406 aa5.24□□□□□ -1.57
NUP54-204ENST00000506098 VAMP8Q9BV40 100 aa5.24□□□□□ -1.57
NUP54-204ENST00000506098 C11orf21Q9P2W6 132 aa5.24□□□□□ -1.57
NUP54-204ENST00000506098 XCL2Q9UBD3 114 aa5.24□□□□□ -1.57
NUP54-204ENST00000506098 ERG28Q9UKR5 140 aa5.24□□□□□ -1.57
NUP54-204ENST00000506098 IGKV3D-20A0A0C4DH25 116 aa5.23□□□□□ -1.57
NUP54-204ENST00000506098 H7BYZ3 331 aa5.23□□□□□ -1.57
NUP54-204ENST00000506098 CA1P00915 261 aaPredicted RBP5.23□□□□□ -1.57
NUP54-204ENST00000506098 PRB2P02812 416 aaPredicted RBP5.23□□□□□ -1.57
NUP54-204ENST00000506098 CXCL1P09341 107 aa5.23□□□□□ -1.57
NUP54-204ENST00000506098 HNRNPA3P51991 378 aaKnown RBP5.23□□□□□ -1.57
NUP54-204ENST00000506098 TCTAP57738 103 aa5.23□□□□□ -1.57
NUP54-204ENST00000506098 CT83Q5H943 113 aa5.23□□□□□ -1.57
NUP54-204ENST00000506098 OR5A1Q8NGJ0 315 aa5.23□□□□□ -1.57
NUP54-204ENST00000506098 KCNS1Q96KK3 526 aa5.23□□□□□ -1.57
NUP54-204ENST00000506098 TMEM126AQ9H061 195 aa5.23□□□□□ -1.57
NUP54-204ENST00000506098 RNASE7Q9H1E1 156 aaKnown RBP5.23□□□□□ -1.57
NUP54-204ENST00000506098 NBEAL2Q6ZNJ1 2754 aa5.22□□□□□ -1.57
NUP54-204ENST00000506098 IGHV1OR15-1A0A075B7D0 117 aa5.22□□□□□ -1.57
NUP54-204ENST00000506098 SMIM9A6NGZ8 99 aa5.22□□□□□ -1.57
NUP54-204ENST00000506098 NUDT3O95989 172 aa5.22□□□□□ -1.57
NUP54-204ENST00000506098 P01737 135 aa5.22□□□□□ -1.57
NUP54-204ENST00000506098 FAM3BP58499 235 aaPredicted RBP5.22□□□□□ -1.57
NUP54-204ENST00000506098 HSD52Q0P140 79 aa5.22□□□□□ -1.57
NUP54-204ENST00000506098 ANXA2RQ3ZCQ2 193 aa5.22□□□□□ -1.57
NUP54-204ENST00000506098 PDZD11Q5EBL8 140 aa5.22□□□□□ -1.57
NUP54-204ENST00000506098 FAM159AQ6UWV7 190 aa5.22□□□□□ -1.57
NUP54-204ENST00000506098 OR10G8Q8NGN5 311 aa5.22□□□□□ -1.57
NUP54-204ENST00000506098 RNF183Q96D59 192 aa5.22□□□□□ -1.57
NUP54-204ENST00000506098 TP53TG3Q9ULZ0 132 aa5.22□□□□□ -1.57
NUP54-204ENST00000506098 TP53TG1Q9Y2A0 90 aa5.22□□□□□ -1.57
NUP54-204ENST00000506098 V9GYV3 84 aa5.22□□□□□ -1.57
NUP54-204ENST00000506098 DNAH9Q9NYC9 4486 aa5.22□□□□□ -1.57
NUP54-204ENST00000506098 HUWE1Q7Z6Z7 4374 aaKnown RBP5.21□□□□□ -1.57
NUP54-204ENST00000506098 PRKDCP78527 4128 aaKnown RBP5.21□□□□□ -1.58
NUP54-204ENST00000506098 FAM231BA6NCW3 169 aa5.21□□□□□ -1.58
NUP54-204ENST00000506098 J3QL48 77 aa5.21□□□□□ -1.58
NUP54-204ENST00000506098 ORM1P02763 201 aa5.21□□□□□ -1.58
NUP54-204ENST00000506098 CTRLP40313 264 aa5.21□□□□□ -1.58
NUP54-204ENST00000506098 FOXA3P55318 350 aaPredicted RBP5.21□□□□□ -1.58
NUP54-204ENST00000506098 DEFB121Q5J5C9 76 aa5.21□□□□□ -1.58
NUP54-204ENST00000506098 SBSPONQ8IVN8 264 aa5.21□□□□□ -1.58
NUP54-204ENST00000506098 LINC01587Q99440 93 aa5.21□□□□□ -1.58
NUP54-204ENST00000506098 GFRA4Q9GZZ7 299 aa5.21□□□□□ -1.58
NUP54-204ENST00000506098 RPP21Q9H633 154 aaKnown RBP5.21□□□□□ -1.58
NUP54-204ENST00000506098 HSPB8Q9UJY1 196 aa5.21□□□□□ -1.58
NUP54-204ENST00000506098 COL7A1Q02388 2944 aa5.2□□□□□ -1.58
NUP54-204ENST00000506098 TENM3Q9P273 2699 aa5.2□□□□□ -1.58
NUP54-204ENST00000506098 GAGE12HA6NDE8 117 aa5.2□□□□□ -1.58
NUP54-204ENST00000506098 A8MWL6 223 aa5.2□□□□□ -1.58
NUP54-204ENST00000506098 M0QXV9 152 aa5.2□□□□□ -1.58
NUP54-204ENST00000506098 GNRH2O43555 120 aa5.2□□□□□ -1.58
NUP54-204ENST00000506098 SPRY2O43597 315 aa5.2□□□□□ -1.58
NUP54-204ENST00000506098 IGLC6P0CF74 106 aa5.2□□□□□ -1.58
NUP54-204ENST00000506098 IGLC3P0DOY3 106 aa5.2□□□□□ -1.58
NUP54-204ENST00000506098 MED14OSP0DP75 135 aa5.2□□□□□ -1.58
NUP54-204ENST00000506098 BATFQ16520 125 aa5.2□□□□□ -1.58
NUP54-204ENST00000506098 DEFB135Q30KP9 77 aa5.2□□□□□ -1.58
NUP54-204ENST00000506098 MUC21Q5SSG8 566 aa5.2□□□□□ -1.58
NUP54-204ENST00000506098 UFSP1Q6NVU6 142 aa5.2□□□□□ -1.58
NUP54-204ENST00000506098 ZNF493Q6ZR52 646 aa5.2□□□□□ -1.58
NUP54-204ENST00000506098 TSKUQ8WUA8 353 aa5.2□□□□□ -1.58
NUP54-204ENST00000506098 RCHY1Q96PM5 261 aa5.2□□□□□ -1.58
NUP54-204ENST00000506098 B9D2Q9BPU9 175 aa5.2□□□□□ -1.58
NUP54-204ENST00000506098 TM2D3Q9BRN9 247 aa5.2□□□□□ -1.58
NUP54-204ENST00000506098 OVOL2Q9BRP0 275 aa5.2□□□□□ -1.58
NUP54-204ENST00000506098 IL36BQ9NZH7 164 aa5.2□□□□□ -1.58
NUP54-204ENST00000506098 X6R8D5 127 aa5.2□□□□□ -1.58
NUP54-204ENST00000506098 TRGV11A0A075B6L2 103 aa5.19□□□□□ -1.58
NUP54-204ENST00000506098 IGHV3-16A0A0C4DH30 117 aa5.19□□□□□ -1.58
NUP54-204ENST00000506098 SMIM27A0A1W2PRY6 76 aa5.19□□□□□ -1.58
NUP54-204ENST00000506098 PLAC8L1A1L4L8 177 aa5.19□□□□□ -1.58
NUP54-204ENST00000506098 OR5AL1P0C617 328 aa5.19□□□□□ -1.58
NUP54-204ENST00000506098 RNASE3P12724 160 aaKnown RBP5.19□□□□□ -1.58
NUP54-204ENST00000506098 MIFP14174 115 aa5.19□□□□□ -1.58
NUP54-204ENST00000506098 SMIM20Q8N5G0 67 aa5.19□□□□□ -1.58
NUP54-204ENST00000506098 C11orf72Q8NBR9 251 aa5.19□□□□□ -1.58
NUP54-204ENST00000506098 IL17DQ8TAD2 202 aa5.19□□□□□ -1.58
NUP54-204ENST00000506098 TMEM263Q8WUH6 116 aaKnown RBP5.19□□□□□ -1.58
NUP54-204ENST00000506098 C16orf74Q96GX8 76 aa5.19□□□□□ -1.58
NUP54-204ENST00000506098 C9orf85Q96MD7 179 aa5.19□□□□□ -1.58
NUP54-204ENST00000506098 SCRT2Q9NQ03 307 aa5.19□□□□□ -1.58
NUP54-204ENST00000506098 NAT8BQ9UHF3 227 aa5.19□□□□□ -1.58
NUP54-204ENST00000506098 CSDC2Q9Y534 153 aaKnown RBP5.19□□□□□ -1.58
NUP54-204ENST00000506098 IGHV3OR16-12A0A075B7B8 117 aa5.18□□□□□ -1.58
NUP54-204ENST00000506098 A6NDN8 102 aa5.18□□□□□ -1.58
NUP54-204ENST00000506098 F2Z2F3 143 aa5.18□□□□□ -1.58
NUP54-204ENST00000506098 PRM2P04554 102 aa5.18□□□□□ -1.58
NUP54-204ENST00000506098 ASIPP42127 132 aa5.18□□□□□ -1.58
NUP54-204ENST00000506098 TCL1AP56279 114 aa5.18□□□□□ -1.58
NUP54-204ENST00000506098 ZNF415Q09FC8 603 aa5.18□□□□□ -1.58
NUP54-204ENST00000506098 SMAGPQ0VAQ4 97 aa5.18□□□□□ -1.58
NUP54-204ENST00000506098 PMCHL1Q16048 86 aa5.18□□□□□ -1.58
NUP54-204ENST00000506098 RRN3P1Q2M238 152 aa5.18□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 80.3 ms