RNA–Protein interactions for RNA: ENST00000493341.1

VPS13A-212, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2

Gene VPS13A, Length 2,001 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-212ENST00000493341 NDUFA2O43678 99 aa2.1□□□□□ -2.07
VPS13A-212ENST00000493341 APODP05090 189 aa2.1□□□□□ -2.07
VPS13A-212ENST00000493341 EVI2AP22794 236 aa2.1□□□□□ -2.07
VPS13A-212ENST00000493341 C10orf55Q5SWW7 151 aa2.1□□□□□ -2.07
VPS13A-212ENST00000493341 ARPINQ7Z6K5 226 aa2.1□□□□□ -2.07
VPS13A-212ENST00000493341 CCL4L1Q8NHW4 92 aa2.1□□□□□ -2.07
VPS13A-212ENST00000493341 ZNF625Q96I27 306 aaPredicted RBP2.1□□□□□ -2.07
VPS13A-212ENST00000493341 CHCHD2Q9Y6H1 151 aaPredicted RBP2.1□□□□□ -2.07
VPS13A-212ENST00000493341 CACNA1EQ15878 2313 aa2.1□□□□□ -2.07
VPS13A-212ENST00000493341 ANKRD36A6QL64 1941 aa2.1□□□□□ -2.07
VPS13A-212ENST00000493341 CXorf51AA0A1B0GTR3 108 aa2.1□□□□□ -2.07
VPS13A-212ENST00000493341 HBDP02042 147 aa2.1□□□□□ -2.07
VPS13A-212ENST00000493341 LSM3P62310 102 aaKnown RBP2.1□□□□□ -2.07
VPS13A-212ENST00000493341 PP632Q6XCG6 107 aa2.1□□□□□ -2.07
VPS13A-212ENST00000493341 OR4S1Q8NGB4 309 aa2.1□□□□□ -2.07
VPS13A-212ENST00000493341 OR5AK2Q8NH90 309 aa2.1□□□□□ -2.07
VPS13A-212ENST00000493341 USP34Q70CQ2 3546 aa2.1□□□□□ -2.07
VPS13A-212ENST00000493341 DMXL1Q9Y485 3027 aa2.09□□□□□ -2.07
VPS13A-212ENST00000493341 SPTBN4Q9H254 2564 aa2.09□□□□□ -2.07
VPS13A-212ENST00000493341 TRGV2A0A075B6R0 118 aa2.09□□□□□ -2.07
VPS13A-212ENST00000493341 LOC107986453A0A1B0GWG9 222 aa2.09□□□□□ -2.07
VPS13A-212ENST00000493341 SMIM24O75264 130 aa2.09□□□□□ -2.07
VPS13A-212ENST00000493341 HAGHLQ6PII5 290 aaPredicted RBP2.09□□□□□ -2.07
VPS13A-212ENST00000493341 GKN2Q86XP6 184 aa2.09□□□□□ -2.07
VPS13A-212ENST00000493341 RIF1Q5UIP0 2472 aaKnown RBP2.09□□□□□ -2.08
VPS13A-212ENST00000493341 KMT2BQ9UMN6 2715 aaPredicted RBP2.09□□□□□ -2.08
VPS13A-212ENST00000493341 TRACP01848 142 aa2.08□□□□□ -2.08
VPS13A-212ENST00000493341 SAA1P0DJI8 122 aaPredicted RBP2.08□□□□□ -2.08
VPS13A-212ENST00000493341 SLC25A4P12235 298 aa2.08□□□□□ -2.08
VPS13A-212ENST00000493341 DIAPH2-AS1Q14236 149 aa2.08□□□□□ -2.08
VPS13A-212ENST00000493341 Q8TAT8 98 aa2.08□□□□□ -2.08
VPS13A-212ENST00000493341 MAGOHBQ96A72 148 aaKnown RBP2.08□□□□□ -2.08
VPS13A-212ENST00000493341 CST11Q9H112 138 aa2.08□□□□□ -2.08
VPS13A-212ENST00000493341 TNFSF18Q9UNG2 199 aa2.08□□□□□ -2.08
VPS13A-212ENST00000493341 VPS13AQ96RL7 3174 aa2.08□□□□□ -2.08
VPS13A-212ENST00000493341 FRYLO94915 3013 aa2.08□□□□□ -2.08
VPS13A-212ENST00000493341 CEP250Q9BV73 2442 aa2.08□□□□□ -2.08
VPS13A-212ENST00000493341 ASCC3Q8N3C0 2202 aaKnown RBP2.08□□□□□ -2.08
VPS13A-212ENST00000493341 SCN3AQ9NY46 2000 aa2.08□□□□□ -2.08
VPS13A-212ENST00000493341 TANC2Q9HCD6 1990 aa2.08□□□□□ -2.08
VPS13A-212ENST00000493341 MYLKQ15746 1914 aa2.08□□□□□ -2.08
VPS13A-212ENST00000493341 WDR87Q6ZQQ6 2873 aa2.08□□□□□ -2.08
VPS13A-212ENST00000493341 J3QR89 54 aa2.08□□□□□ -2.08
VPS13A-212ENST00000493341 HYPMO75409 117 aa2.08□□□□□ -2.08
VPS13A-212ENST00000493341 RNASE3P12724 160 aaKnown RBP2.08□□□□□ -2.08
VPS13A-212ENST00000493341 BLCAPP62952 87 aa2.08□□□□□ -2.08
VPS13A-212ENST00000493341 KRTAP5-2Q701N4 177 aa2.08□□□□□ -2.08
VPS13A-212ENST00000493341 ZCCHC13Q8WW36 166 aaKnown RBP2.08□□□□□ -2.08
VPS13A-212ENST00000493341 TPT1P8Q9HAU6 139 aa2.08□□□□□ -2.08
VPS13A-212ENST00000493341 DMDP11532 3685 aa2.07□□□□□ -2.08
VPS13A-212ENST00000493341 CFAP54Q96N23 3096 aa2.07□□□□□ -2.08
VPS13A-212ENST00000493341 EP300Q09472 2414 aaPredicted RBP2.07□□□□□ -2.08
VPS13A-212ENST00000493341 SNRPD3P62318 126 aaKnown RBP2.07□□□□□ -2.08
VPS13A-212ENST00000493341 KRTAP13-4Q3LI77 160 aa2.07□□□□□ -2.08
VPS13A-212ENST00000493341 ZNF833PQ6ZTB9 187 aa2.07□□□□□ -2.08
VPS13A-212ENST00000493341 C15orf53Q8NAA6 179 aa2.07□□□□□ -2.08
VPS13A-212ENST00000493341 OR4C6Q8NH72 309 aa2.07□□□□□ -2.08
VPS13A-212ENST00000493341 NABP2Q9BQ15 211 aa2.07□□□□□ -2.08
VPS13A-212ENST00000493341 PAIP2BQ9ULR5 123 aaKnown RBP2.07□□□□□ -2.08
VPS13A-212ENST00000493341 SOX21Q9Y651 276 aaPredicted RBP2.07□□□□□ -2.08
VPS13A-212ENST00000493341 PTPRZ1P23471 2315 aaPredicted RBP2.07□□□□□ -2.08
VPS13A-212ENST00000493341 HEATR1Q9H583 2144 aaKnown RBP2.07□□□□□ -2.08
VPS13A-212ENST00000493341 DCHS1Q96JQ0 3298 aa2.07□□□□□ -2.08
VPS13A-212ENST00000493341 MYO15AQ9UKN7 3530 aa2.07□□□□□ -2.08
VPS13A-212ENST00000493341 A0A087WSZ3 146 aa2.07□□□□□ -2.08
VPS13A-212ENST00000493341 LOC107984156A0A0G2JMH3 177 aa2.07□□□□□ -2.08
VPS13A-212ENST00000493341 C3orf85A0A1B0GTC6 90 aa2.07□□□□□ -2.08
VPS13A-212ENST00000493341 ZNF727A8MUV8 499 aa2.07□□□□□ -2.08
VPS13A-212ENST00000493341 K7ERU9 68 aa2.07□□□□□ -2.08
VPS13A-212ENST00000493341 HIST1H1BP16401 226 aaKnown RBP2.07□□□□□ -2.08
VPS13A-212ENST00000493341 AKR1D1P51857 326 aa2.07□□□□□ -2.08
VPS13A-212ENST00000493341 ARL17AQ8IVW1 177 aa2.07□□□□□ -2.08
VPS13A-212ENST00000493341 DEFB106AQ8N104 65 aa2.07□□□□□ -2.08
VPS13A-212ENST00000493341 OR5AS1Q8N127 324 aa2.07□□□□□ -2.08
VPS13A-212ENST00000493341 LPAR5Q9H1C0 372 aa2.07□□□□□ -2.08
VPS13A-212ENST00000493341 KLK9Q9UKQ9 250 aa2.07□□□□□ -2.08
VPS13A-212ENST00000493341 ZNF736B4DX44 427 aaPredicted RBP2.06□□□□□ -2.08
VPS13A-212ENST00000493341 IGLC6P0CF74 106 aa2.06□□□□□ -2.08
VPS13A-212ENST00000493341 KDELR1P24390 212 aa2.06□□□□□ -2.08
VPS13A-212ENST00000493341 PCBD1P61457 104 aa2.06□□□□□ -2.08
VPS13A-212ENST00000493341 CNBPP62633 177 aaKnown RBP2.06□□□□□ -2.08
VPS13A-212ENST00000493341 FAM74A1Q5RGS3 127 aa2.06□□□□□ -2.08
VPS13A-212ENST00000493341 GLYATL3Q5SZD4 288 aa2.06□□□□□ -2.08
VPS13A-212ENST00000493341 Q8N2B8 174 aa2.06□□□□□ -2.08
VPS13A-212ENST00000493341 MMGT1Q8N4V1 131 aa2.06□□□□□ -2.08
VPS13A-212ENST00000493341 C4orf3Q8WVX3 66 aa2.06□□□□□ -2.08
VPS13A-212ENST00000493341 ALPK2Q86TB3 2170 aa2.06□□□□□ -2.08
VPS13A-212ENST00000493341 A0A096LPI6 279 aa2.05□□□□□ -2.08
VPS13A-212ENST00000493341 F8W1H4 67 aa2.05□□□□□ -2.08
VPS13A-212ENST00000493341 QRFPP83859 136 aa2.05□□□□□ -2.08
VPS13A-212ENST00000493341 GLIPR1L1Q6UWM5 242 aa2.05□□□□□ -2.08
VPS13A-212ENST00000493341 TMEM91Q6ZNR0 172 aa2.05□□□□□ -2.08
VPS13A-212ENST00000493341 CTAGE3PQ8IX95 158 aa2.05□□□□□ -2.08
VPS13A-212ENST00000493341 ZNF431Q8TF32 576 aaPredicted RBP2.05□□□□□ -2.08
VPS13A-212ENST00000493341 PSMF1Q92530 271 aa2.05□□□□□ -2.08
VPS13A-212ENST00000493341 COMMD3Q9UBI1 195 aa2.05□□□□□ -2.08
VPS13A-212ENST00000493341 LAMA1P25391 3075 aa2.05□□□□□ -2.08
VPS13A-212ENST00000493341 LINC00694P0DN24 101 aa2.05□□□□□ -2.08
VPS13A-212ENST00000493341 CKS2P33552 79 aa2.05□□□□□ -2.08
VPS13A-212ENST00000493341 NCS1P62166 190 aa2.05□□□□□ -2.08
Retrieved 100 of 20,778 RNA–protein pairs in 126.4 ms