RNA–Protein interactions for RNA: ENST00000492506.1

HDAC3-213, Transcript of histone deacetylase 3, humanhuman

TSL 2

Gene HDAC3, Length 830 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-213ENST00000492506 IGHV3-23P01764 117 aa9.66□□□□□ -0.86
HDAC3-213ENST00000492506 APOC4P55056 127 aa9.66□□□□□ -0.86
HDAC3-213ENST00000492506 KLK9Q2XQG4 91 aa9.66□□□□□ -0.86
HDAC3-213ENST00000492506 CLEC19AQ6UXS0 136 aa9.66□□□□□ -0.86
HDAC3-213ENST00000492506 LINC00173Q6ZV60 143 aa9.66□□□□□ -0.86
HDAC3-213ENST00000492506 ZNF414Q96IQ9 312 aa9.66□□□□□ -0.86
HDAC3-213ENST00000492506 FANCD2OSQ96PS1 177 aa9.66□□□□□ -0.86
HDAC3-213ENST00000492506 SPANXCQ9NY87 97 aa9.66□□□□□ -0.86
HDAC3-213ENST00000492506 KLK9Q9UKQ9 250 aa9.66□□□□□ -0.86
HDAC3-213ENST00000492506 DNAH11Q96DT5 4516 aa9.66□□□□□ -0.86
HDAC3-213ENST00000492506 TRAV25A0A0B4J276 109 aa9.65□□□□□ -0.86
HDAC3-213ENST00000492506 C15orf61A6NNL5 157 aa9.65□□□□□ -0.86
HDAC3-213ENST00000492506 IGLL5B9A064 214 aa9.65□□□□□ -0.86
HDAC3-213ENST00000492506 E7EUB6 86 aa9.65□□□□□ -0.86
HDAC3-213ENST00000492506 NPIPB6E9PJ23 425 aa9.65□□□□□ -0.86
HDAC3-213ENST00000492506 SAA1P0DJI8 122 aaPredicted RBP9.65□□□□□ -0.86
HDAC3-213ENST00000492506 HSPE1P61604 102 aaKnown RBP9.65□□□□□ -0.86
HDAC3-213ENST00000492506 Q6Q795 121 aa9.65□□□□□ -0.86
HDAC3-213ENST00000492506 UNQ9165/PRO28630Q6UXU0 137 aa9.65□□□□□ -0.86
HDAC3-213ENST00000492506 PRSS3P2Q8NHM4 247 aa9.65□□□□□ -0.86
HDAC3-213ENST00000492506 OSR1Q8TAX0 266 aaPredicted RBP9.65□□□□□ -0.86
HDAC3-213ENST00000492506 PPDPFLQ8WWR9 84 aa9.65□□□□□ -0.86
HDAC3-213ENST00000492506 TNFRSF18Q9Y5U5 241 aa9.65□□□□□ -0.86
HDAC3-213ENST00000492506 S4R3C0 116 aa9.65□□□□□ -0.86
HDAC3-213ENST00000492506 C19orf71A6NCJ1 209 aa9.64□□□□□ -0.87
HDAC3-213ENST00000492506 HBDP02042 147 aa9.64□□□□□ -0.87
HDAC3-213ENST00000492506 APOHP02749 345 aaPredicted RBP9.64□□□□□ -0.87
HDAC3-213ENST00000492506 GCSHP23434 173 aa9.64□□□□□ -0.87
HDAC3-213ENST00000492506 FOXI1Q12951 378 aa9.64□□□□□ -0.87
HDAC3-213ENST00000492506 FAM106AQ4KMX7 169 aa9.64□□□□□ -0.87
HDAC3-213ENST00000492506 Q6ZUT4 128 aa9.64□□□□□ -0.87
HDAC3-213ENST00000492506 CEND1Q8N111 149 aa9.64□□□□□ -0.87
HDAC3-213ENST00000492506 KIR2DL5BQ8NHK3 375 aa9.64□□□□□ -0.87
HDAC3-213ENST00000492506 SPXQ9BT56 116 aa9.64□□□□□ -0.87
HDAC3-213ENST00000492506 CHAC1Q9BUX1 264 aa9.64□□□□□ -0.87
HDAC3-213ENST00000492506 PRNDQ9UKY0 176 aa9.64□□□□□ -0.87
HDAC3-213ENST00000492506 A0A1B0GVY2 172 aa9.63□□□□□ -0.87
HDAC3-213ENST00000492506 NPIPB5A8MRT5 1133 aa9.63□□□□□ -0.87
HDAC3-213ENST00000492506 M0QXV9 152 aa9.63□□□□□ -0.87
HDAC3-213ENST00000492506 ASIPP42127 132 aa9.63□□□□□ -0.87
HDAC3-213ENST00000492506 RRN3P1Q2M238 152 aa9.63□□□□□ -0.87
HDAC3-213ENST00000492506 ODF3L2Q3SX64 289 aa9.63□□□□□ -0.87
HDAC3-213ENST00000492506 OR1L8Q8NGR8 309 aa9.63□□□□□ -0.87
HDAC3-213ENST00000492506 ZNF503Q96F45 646 aa9.63□□□□□ -0.87
HDAC3-213ENST00000492506 PAXXQ9BUH6 204 aa9.63□□□□□ -0.87
HDAC3-213ENST00000492506 TP73-AS1Q9UF72 201 aa9.63□□□□□ -0.87
HDAC3-213ENST00000492506 A0A1B0GUT8 65 aa9.62□□□□□ -0.87
HDAC3-213ENST00000492506 A0A1B0GWB2 263 aa9.62□□□□□ -0.87
HDAC3-213ENST00000492506 ACTL6BO94805 426 aa9.62□□□□□ -0.87
HDAC3-213ENST00000492506 NANOS2P60321 138 aaKnown RBP9.62□□□□□ -0.87
HDAC3-213ENST00000492506 WFDC2Q14508 124 aa9.62□□□□□ -0.87
HDAC3-213ENST00000492506 POU2AF1Q16633 256 aa9.62□□□□□ -0.87
HDAC3-213ENST00000492506 C2orf83Q53S99 150 aa9.62□□□□□ -0.87
HDAC3-213ENST00000492506 MLST8Q9BVC4 326 aa9.62□□□□□ -0.87
HDAC3-213ENST00000492506 MAP6D1Q9H9H5 199 aa9.62□□□□□ -0.87
HDAC3-213ENST00000492506 PRO0461Q9UI25 63 aa9.62□□□□□ -0.87
HDAC3-213ENST00000492506 ATP5LO75964 103 aa9.61□□□□□ -0.87
HDAC3-213ENST00000492506 BRWD1-AS2P59051 145 aa9.61□□□□□ -0.87
HDAC3-213ENST00000492506 ETDBQ3ZM63 59 aa9.61□□□□□ -0.87
HDAC3-213ENST00000492506 SYT8Q8NBV8 401 aa9.61□□□□□ -0.87
HDAC3-213ENST00000492506 EEF1AKMT3Q96AZ1 226 aa9.61□□□□□ -0.87
HDAC3-213ENST00000492506 IFI27L1Q96BM0 104 aa9.61□□□□□ -0.87
HDAC3-213ENST00000492506 FAM167A-AS1Q96KT0 104 aa9.61□□□□□ -0.87
HDAC3-213ENST00000492506 TMEM126AQ9H061 195 aa9.61□□□□□ -0.87
HDAC3-213ENST00000492506 CDIP1Q9H305 208 aa9.61□□□□□ -0.87
HDAC3-213ENST00000492506 TMEM140Q9NV12 185 aa9.61□□□□□ -0.87
HDAC3-213ENST00000492506 SS18L2Q9UHA2 77 aa9.61□□□□□ -0.87
HDAC3-213ENST00000492506 EPDR1Q9UM22 224 aa9.61□□□□□ -0.87
HDAC3-213ENST00000492506 GAGE12JA6NER3 117 aa9.6□□□□□ -0.87
HDAC3-213ENST00000492506 GAGE7O76087 117 aa9.6□□□□□ -0.87
HDAC3-213ENST00000492506 LTAP01374 205 aa9.6□□□□□ -0.87
HDAC3-213ENST00000492506 GAGE12FP0CL80 117 aa9.6□□□□□ -0.87
HDAC3-213ENST00000492506 GAGE12GP0CL81 117 aa9.6□□□□□ -0.87
HDAC3-213ENST00000492506 GAGE12IP0CL82 117 aa9.6□□□□□ -0.87
HDAC3-213ENST00000492506 MED14OSP0DP75 135 aa9.6□□□□□ -0.87
HDAC3-213ENST00000492506 RPL35AP18077 110 aaKnown RBP9.6□□□□□ -0.87
HDAC3-213ENST00000492506 EVI2AP22794 236 aa9.6□□□□□ -0.87
HDAC3-213ENST00000492506 SUB1P53999 127 aaKnown RBP eCLIP9.6□□□□□ -0.87
HDAC3-213ENST00000492506 GAGE4Q13068 117 aa9.6□□□□□ -0.87
HDAC3-213ENST00000492506 ZNF493Q6ZR52 646 aa9.6□□□□□ -0.87
HDAC3-213ENST00000492506 VKORC1L1Q8N0U8 176 aa9.6□□□□□ -0.87
HDAC3-213ENST00000492506 TMEM14BQ9NUH8 114 aa9.6□□□□□ -0.87
HDAC3-213ENST00000492506 IGLV11-55A0A075B6I3 123 aa9.59□□□□□ -0.87
HDAC3-213ENST00000492506 TRBV7-1A0A0A6YYK4 115 aa9.59□□□□□ -0.87
HDAC3-213ENST00000492506 CGB1A6NKQ9 187 aa9.59□□□□□ -0.87
HDAC3-213ENST00000492506 INS-IGF2F8WCM5 200 aa9.59□□□□□ -0.87
HDAC3-213ENST00000492506 COX7A2P2O60397 106 aa9.59□□□□□ -0.87
HDAC3-213ENST00000492506 FCGR3BO75015 233 aa9.59□□□□□ -0.87
HDAC3-213ENST00000492506 RPL27AP46776 148 aaKnown RBP9.59□□□□□ -0.87
HDAC3-213ENST00000492506 NMUP48645 174 aa9.59□□□□□ -0.87
HDAC3-213ENST00000492506 FXYD2P54710 66 aa9.59□□□□□ -0.87
HDAC3-213ENST00000492506 CACNG7P62955 275 aa9.59□□□□□ -0.87
HDAC3-213ENST00000492506 HERV-K104P63124 156 aa9.59□□□□□ -0.87
HDAC3-213ENST00000492506 SPINK9Q5DT21 86 aa9.59□□□□□ -0.87
HDAC3-213ENST00000492506 OR8A1Q8NGG7 326 aa9.59□□□□□ -0.87
HDAC3-213ENST00000492506 C11orf45Q8TAV5 145 aa9.59□□□□□ -0.87
HDAC3-213ENST00000492506 TMEM167AQ8TBQ9 72 aa9.59□□□□□ -0.87
HDAC3-213ENST00000492506 PGLYRP4Q96LB8 373 aa9.59□□□□□ -0.87
HDAC3-213ENST00000492506 NAA38Q9BRA0 125 aaKnown RBP9.59□□□□□ -0.87
HDAC3-213ENST00000492506 APLNQ9ULZ1 77 aa9.59□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 42.8 ms