RNA–Protein interactions for RNA: ENST00000489028.1

RFC4-213, Transcript of replication factor C subunit 4, humanhuman

TSL 3

Gene RFC4, Length 533 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFC4-213ENST00000489028 SNCGO76070 127 aa0.68□□□□□ -2.3
RFC4-213ENST00000489028 NDUFB6O95139 128 aa0.68□□□□□ -2.3
RFC4-213ENST00000489028 IFNA17P01571 189 aa0.68□□□□□ -2.3
RFC4-213ENST00000489028 C9orf116Q5BN46 136 aaPredicted RBP0.68□□□□□ -2.3
RFC4-213ENST00000489028 C6orf52Q5T4I8 152 aa0.68□□□□□ -2.3
RFC4-213ENST00000489028 DPH3Q96FX2 82 aa0.68□□□□□ -2.3
RFC4-213ENST00000489028 RPRMQ9NS64 109 aa0.68□□□□□ -2.3
RFC4-213ENST00000489028 CASZ1Q86V15 1759 aa0.68□□□□□ -2.3
RFC4-213ENST00000489028 PTPRMP28827 1452 aa0.67□□□□□ -2.3
RFC4-213ENST00000489028 ABCA4P78363 2273 aa0.67□□□□□ -2.3
RFC4-213ENST00000489028 BICRAQ9NZM4 1560 aa0.67□□□□□ -2.3
RFC4-213ENST00000489028 DAPK1P53355 1430 aa0.67□□□□□ -2.3
RFC4-213ENST00000489028 MYOM3Q5VTT5 1437 aa0.67□□□□□ -2.3
RFC4-213ENST00000489028 LY6G6CO95867 125 aa0.67□□□□□ -2.3
RFC4-213ENST00000489028 RPL37P61927 97 aaKnown RBP0.67□□□□□ -2.3
RFC4-213ENST00000489028 SSBP1Q04837 148 aaKnown RBP0.67□□□□□ -2.3
RFC4-213ENST00000489028 FAM74A4Q5TZK3 123 aa0.67□□□□□ -2.3
RFC4-213ENST00000489028 PDCD10Q9BUL8 212 aa0.67□□□□□ -2.3
RFC4-213ENST00000489028 DLEC1Q9Y238 1755 aa0.67□□□□□ -2.3
RFC4-213ENST00000489028 MYH13Q9UKX3 1938 aa0.66□□□□□ -2.3
RFC4-213ENST00000489028 RREB1Q92766 1687 aa0.66□□□□□ -2.3
RFC4-213ENST00000489028 A0A096LNT2 108 aa0.66□□□□□ -2.3
RFC4-213ENST00000489028 PIGBOS1A0A0B4J2F0 54 aa0.66□□□□□ -2.3
RFC4-213ENST00000489028 GNG7O60262 68 aa0.66□□□□□ -2.3
RFC4-213ENST00000489028 CCL3L1P16619 93 aa0.66□□□□□ -2.3
RFC4-213ENST00000489028 CBLN1P23435 193 aa0.66□□□□□ -2.3
RFC4-213ENST00000489028 SNRNP25Q9BV90 132 aaKnown RBP0.66□□□□□ -2.3
RFC4-213ENST00000489028 IBTKQ9P2D0 1353 aaPredicted RBP0.66□□□□□ -2.3
RFC4-213ENST00000489028 KIAA0100Q14667 2235 aaKnown RBP0.65□□□□□ -2.3
RFC4-213ENST00000489028 NAIPQ13075 1403 aa0.65□□□□□ -2.3
RFC4-213ENST00000489028 A0A0D9SG42 100 aa0.65□□□□□ -2.31
RFC4-213ENST00000489028 ELOF1P60002 83 aaKnown RBP0.65□□□□□ -2.31
RFC4-213ENST00000489028 NPC2P61916 151 aa0.65□□□□□ -2.31
RFC4-213ENST00000489028 UBE2G1P62253 170 aa0.65□□□□□ -2.31
RFC4-213ENST00000489028 RPL13AP3Q6NVV1 102 aa0.65□□□□□ -2.31
RFC4-213ENST00000489028 C4orf33Q8N1A6 199 aa0.65□□□□□ -2.31
RFC4-213ENST00000489028 C20orf197Q8N268 126 aa0.65□□□□□ -2.31
RFC4-213ENST00000489028 FBN2P35556 2912 aa0.65□□□□□ -2.31
RFC4-213ENST00000489028 PLXNA2O75051 1894 aa0.65□□□□□ -2.31
RFC4-213ENST00000489028 AFDNP55196 1824 aaKnown RBP0.64□□□□□ -2.31
RFC4-213ENST00000489028 ESPL1Q14674 2120 aa0.64□□□□□ -2.31
RFC4-213ENST00000489028 F2Z2F3 143 aa0.64□□□□□ -2.31
RFC4-213ENST00000489028 APODP05090 189 aa0.64□□□□□ -2.31
RFC4-213ENST00000489028 HIST1H1DP16402 221 aaKnown RBP0.64□□□□□ -2.31
RFC4-213ENST00000489028 SPATA8Q6RVD6 105 aa0.64□□□□□ -2.31
RFC4-213ENST00000489028 COX7B2Q8TF08 81 aa0.64□□□□□ -2.31
RFC4-213ENST00000489028 SEC11CQ9BY50 192 aa0.64□□□□□ -2.31
RFC4-213ENST00000489028 AGPAT4-IT1Q9H0P7 198 aa0.64□□□□□ -2.31
RFC4-213ENST00000489028 RERGLQ9H628 205 aa0.64□□□□□ -2.31
RFC4-213ENST00000489028 NAA60Q9H7X0 242 aa0.64□□□□□ -2.31
RFC4-213ENST00000489028 V9GYV3 84 aa0.64□□□□□ -2.31
RFC4-213ENST00000489028 MYH6P13533 1939 aa0.64□□□□□ -2.31
RFC4-213ENST00000489028 ZNF518AQ6AHZ1 1483 aa0.63□□□□□ -2.31
RFC4-213ENST00000489028 FGF7P21781 194 aa0.63□□□□□ -2.31
RFC4-213ENST00000489028 BTG2P78543 158 aa0.63□□□□□ -2.31
RFC4-213ENST00000489028 MEIG1Q5JSS6 88 aa0.63□□□□□ -2.31
RFC4-213ENST00000489028 C12orf73Q69YU5 71 aa0.63□□□□□ -2.31
RFC4-213ENST00000489028 C10orf82Q8WW14 230 aa0.63□□□□□ -2.31
RFC4-213ENST00000489028 C10orf95Q9H7T3 257 aa0.63□□□□□ -2.31
RFC4-213ENST00000489028 ZNF142P52746 1687 aaPredicted RBP0.62□□□□□ -2.31
RFC4-213ENST00000489028 KIF13AQ9H1H9 1805 aa0.62□□□□□ -2.31
RFC4-213ENST00000489028 BCORL1Q5H9F3 1711 aa0.62□□□□□ -2.31
RFC4-213ENST00000489028 TRBV10-3A0A0K0K1G6 114 aa0.62□□□□□ -2.31
RFC4-213ENST00000489028 S100A7L2Q5SY68 101 aa0.62□□□□□ -2.31
RFC4-213ENST00000489028 ZNF818PQ6ZRF7 136 aa0.62□□□□□ -2.31
RFC4-213ENST00000489028 ZNF436-AS1Q8NC38 126 aaPredicted RBP0.62□□□□□ -2.31
RFC4-213ENST00000489028 SPTSSBQ8NFR3 76 aa0.62□□□□□ -2.31
RFC4-213ENST00000489028 SERP1Q9Y6X1 66 aa0.62□□□□□ -2.31
RFC4-213ENST00000489028 CFTRP13569 1480 aa0.61□□□□□ -2.31
RFC4-213ENST00000489028 ZNF469Q96JG9 3925 aaPredicted RBP0.61□□□□□ -2.31
RFC4-213ENST00000489028 TRBV7-1A0A0A6YYK4 115 aa0.61□□□□□ -2.31
RFC4-213ENST00000489028 UBE2D1P51668 147 aa0.61□□□□□ -2.31
RFC4-213ENST00000489028 SPINK7P58062 85 aa0.61□□□□□ -2.31
RFC4-213ENST00000489028 CCL8P80075 99 aa0.61□□□□□ -2.31
RFC4-213ENST00000489028 BPESC1Q9GZL8 116 aa0.61□□□□□ -2.31
RFC4-213ENST00000489028 SCP2D1Q9UJQ7 156 aa0.61□□□□□ -2.31
RFC4-213ENST00000489028 AHNAKQ09666 5890 aaKnown RBP0.61□□□□□ -2.31
RFC4-213ENST00000489028 AKAP11Q9UKA4 1901 aa0.61□□□□□ -2.31
RFC4-213ENST00000489028 ABCA1O95477 2261 aa0.61□□□□□ -2.31
RFC4-213ENST00000489028 IFT140Q96RY7 1462 aa0.61□□□□□ -2.31
RFC4-213ENST00000489028 KDM6BO15054 1643 aa0.6□□□□□ -2.31
RFC4-213ENST00000489028 ZNF462Q96JM2 2506 aa0.6□□□□□ -2.31
RFC4-213ENST00000489028 A0A087WTM6 91 aa0.6□□□□□ -2.31
RFC4-213ENST00000489028 APOC4-APOC2K7ER74 178 aa0.6□□□□□ -2.31
RFC4-213ENST00000489028 EDDM3BP56851 147 aa0.6□□□□□ -2.31
RFC4-213ENST00000489028 Q56UQ5 140 aa0.6□□□□□ -2.31
RFC4-213ENST00000489028 Q6AWC8 147 aa0.6□□□□□ -2.31
RFC4-213ENST00000489028 PRR15LQ9BU68 103 aa0.6□□□□□ -2.31
RFC4-213ENST00000489028 ROCK2O75116 1388 aaKnown RBP0.59□□□□□ -2.31
RFC4-213ENST00000489028 ASH1LQ9NR48 2969 aaKnown RBP0.59□□□□□ -2.31
RFC4-213ENST00000489028 AKAIN1P0CW23 69 aa0.59□□□□□ -2.31
RFC4-213ENST00000489028 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa0.59□□□□□ -2.31
RFC4-213ENST00000489028 SMIM11BQ8TCY0 68 aa0.59□□□□□ -2.31
RFC4-213ENST00000489028 FAM103A1Q9BTL3 118 aaKnown RBP0.59□□□□□ -2.31
RFC4-213ENST00000489028 LAMB1P07942 1786 aa0.59□□□□□ -2.32
RFC4-213ENST00000489028 MUC5BQ9HC84 5762 aaPredicted RBP0.59□□□□□ -2.32
RFC4-213ENST00000489028 CDK13Q14004 1512 aaKnown RBP0.59□□□□□ -2.32
RFC4-213ENST00000489028 LOC285556D6RIA3 1793 aa0.58□□□□□ -2.32
RFC4-213ENST00000489028 TRAV13-2A0A0B4J235 113 aa0.58□□□□□ -2.32
RFC4-213ENST00000489028 DLEU1O43261 78 aa0.58□□□□□ -2.32
Retrieved 100 of 20,778 RNA–protein pairs in 79 ms