RNA–Protein interactions for RNA: ENST00000487938.5

VIM-206, Transcript of vimentin, humanhuman

TSL 5

Gene VIM, Length 2,272 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-206ENST00000487938 SYNJ2BPP57105 145 aa13.36□□□□□ -0.27
VIM-206ENST00000487938 E9PLD3 99 aa13.36□□□□□ -0.27
VIM-206ENST00000487938 G3V4G9 280 aa13.36□□□□□ -0.27
VIM-206ENST00000487938 RIPPLY3P57055 190 aa13.36□□□□□ -0.27
VIM-206ENST00000487938 KLHL30-AS1Q8NEE0 82 aa13.36□□□□□ -0.27
VIM-206ENST00000487938 SORL1Q92673 2214 aa13.35□□□□□ -0.27
VIM-206ENST00000487938 A0A0J9YX75 114 aa13.35□□□□□ -0.27
VIM-206ENST00000487938 SDHAF1A6NFY7 115 aa13.35□□□□□ -0.27
VIM-206ENST00000487938 VCYO14598 125 aa13.35□□□□□ -0.27
VIM-206ENST00000487938 SCGB2A2Q13296 93 aa13.35□□□□□ -0.27
VIM-206ENST00000487938 SPINK13Q1W4C9 94 aa13.35□□□□□ -0.27
VIM-206ENST00000487938 ZNF580Q9UK33 172 aa13.35□□□□□ -0.27
VIM-206ENST00000487938 IGHV3-16A0A0C4DH30 117 aa13.34□□□□□ -0.27
VIM-206ENST00000487938 Q8N1Y9 231 aa13.34□□□□□ -0.27
VIM-206ENST00000487938 ZNF479Q96JC4 524 aa13.34□□□□□ -0.27
VIM-206ENST00000487938 IGIPA6NJ69 53 aa13.34□□□□□ -0.27
VIM-206ENST00000487938 C11orf86A6NJI1 115 aa13.34□□□□□ -0.27
VIM-206ENST00000487938 ZNF815PA8K554 130 aa13.34□□□□□ -0.27
VIM-206ENST00000487938 TGFAP01135 160 aa13.34□□□□□ -0.27
VIM-206ENST00000487938 DSCR9P59020 149 aa13.34□□□□□ -0.27
VIM-206ENST00000487938 SNRPD3P62318 126 aaKnown RBP13.34□□□□□ -0.27
VIM-206ENST00000487938 LINC01356Q8N9X3 169 aa13.34□□□□□ -0.27
VIM-206ENST00000487938 PLEKHB2Q96CS7 222 aa13.34□□□□□ -0.27
VIM-206ENST00000487938 KIR2DL4Q99706 377 aa13.34□□□□□ -0.27
VIM-206ENST00000487938 ZNF256Q9Y2P7 627 aaPredicted RBP13.34□□□□□ -0.27
VIM-206ENST00000487938 GATA3P23771 443 aa13.33□□□□□ -0.28
VIM-206ENST00000487938 SAMD13Q5VXD3 122 aa13.33□□□□□ -0.28
VIM-206ENST00000487938 IGLV4-69A0A075B6H9 119 aa13.33□□□□□ -0.28
VIM-206ENST00000487938 K7EQG2 157 aa13.33□□□□□ -0.28
VIM-206ENST00000487938 PRB1P04280 392 aa13.33□□□□□ -0.28
VIM-206ENST00000487938 RPL24P83731 157 aaKnown RBP13.33□□□□□ -0.28
VIM-206ENST00000487938 C9orf85Q96MD7 179 aa13.33□□□□□ -0.28
VIM-206ENST00000487938 ZNF56Q15929 161 aa13.32□□□□□ -0.28
VIM-206ENST00000487938 FOXI2Q6ZQN5 318 aa13.32□□□□□ -0.28
VIM-206ENST00000487938 ZANQ9Y493 2812 aa13.32□□□□□ -0.28
VIM-206ENST00000487938 RPL32P62910 135 aaKnown RBP13.32□□□□□ -0.28
VIM-206ENST00000487938 SCGB1D4Q6XE38 83 aa13.32□□□□□ -0.28
VIM-206ENST00000487938 LGALS9O00182 355 aa13.31□□□□□ -0.28
VIM-206ENST00000487938 PMVKQ15126 192 aa13.31□□□□□ -0.28
VIM-206ENST00000487938 AMTNQ6UX39 209 aa13.31□□□□□ -0.28
VIM-206ENST00000487938 MORN3Q6PF18 240 aaPredicted RBP13.3□□□□□ -0.28
VIM-206ENST00000487938 IGHV1OR15-1A0A075B7D0 117 aa13.3□□□□□ -0.28
VIM-206ENST00000487938 H3BMG7 143 aa13.3□□□□□ -0.28
VIM-206ENST00000487938 COX6B1P14854 86 aa13.3□□□□□ -0.28
VIM-206ENST00000487938 LINC01619G3V211 115 aa13.29□□□□□ -0.28
VIM-206ENST00000487938 OPRPNQ99935 248 aaPredicted RBP13.29□□□□□ -0.28
VIM-206ENST00000487938 TRBV27A0A0K0K1C4 114 aa13.29□□□□□ -0.28
VIM-206ENST00000487938 M0QY20 66 aa13.29□□□□□ -0.28
VIM-206ENST00000487938 HOXA3O43365 443 aaPredicted RBP13.29□□□□□ -0.28
VIM-206ENST00000487938 SRSF9Q13242 221 aaKnown RBP eCLIP13.29□□□□□ -0.28
VIM-206ENST00000487938 WFDC2Q14508 124 aa13.29□□□□□ -0.28
VIM-206ENST00000487938 SYT8Q8NBV8 401 aa13.29□□□□□ -0.28
VIM-206ENST00000487938 ODF3Q96PU9 254 aa13.29□□□□□ -0.28
VIM-206ENST00000487938 USP9YO00507 2555 aaPredicted RBP13.29□□□□□ -0.28
VIM-206ENST00000487938 TEX48A0A1B0GUV7 120 aa13.28□□□□□ -0.28
VIM-206ENST00000487938 HOXD3P31249 432 aaPredicted RBP13.28□□□□□ -0.28
VIM-206ENST00000487938 RRN3P1Q2M238 152 aa13.28□□□□□ -0.28
VIM-206ENST00000487938 TMEM141Q96I45 108 aa13.28□□□□□ -0.28
VIM-206ENST00000487938 MYO18BQ8IUG5 2567 aa13.28□□□□□ -0.28
VIM-206ENST00000487938 HTN1P15515 57 aa13.28□□□□□ -0.28
VIM-206ENST00000487938 TMEM170BQ5T4T1 132 aa13.28□□□□□ -0.28
VIM-206ENST00000487938 MTURNQ8N3F0 131 aa13.28□□□□□ -0.28
VIM-206ENST00000487938 A0A096LNT2 108 aa13.27□□□□□ -0.28
VIM-206ENST00000487938 TMEM89A2RUT3 159 aa13.27□□□□□ -0.28
VIM-206ENST00000487938 ZNF876PQ49A33 203 aa13.27□□□□□ -0.28
VIM-206ENST00000487938 ZNRF2Q8NHG8 242 aa13.27□□□□□ -0.28
VIM-206ENST00000487938 POLQO75417 2590 aa13.27□□□□□ -0.29
VIM-206ENST00000487938 TRBV6-5A0A0K0K1A5 114 aa13.27□□□□□ -0.29
VIM-206ENST00000487938 A0A1B0GWB2 263 aa13.27□□□□□ -0.29
VIM-206ENST00000487938 COTL1Q14019 142 aa13.27□□□□□ -0.29
VIM-206ENST00000487938 BBC3Q96PG8 261 aaPredicted RBP13.27□□□□□ -0.29
VIM-206ENST00000487938 TIMM17AQ99595 171 aa13.27□□□□□ -0.29
VIM-206ENST00000487938 BEX4Q9NWD9 120 aaPredicted RBP13.27□□□□□ -0.29
VIM-206ENST00000487938 FBN2P35556 2912 aa13.26□□□□□ -0.29
VIM-206ENST00000487938 HERVK_113P61574 105 aa13.25□□□□□ -0.29
VIM-206ENST00000487938 C18orf65Q6ZTR6 163 aa13.25□□□□□ -0.29
VIM-206ENST00000487938 VPREB3Q9UKI3 123 aa13.25□□□□□ -0.29
VIM-206ENST00000487938 KNCNA6PVL3 124 aa13.25□□□□□ -0.29
VIM-206ENST00000487938 TSPEAR-AS2P59090 65 aa13.25□□□□□ -0.29
VIM-206ENST00000487938 DEFB136Q30KP8 78 aa13.25□□□□□ -0.29
VIM-206ENST00000487938 PAPPA-AS1Q5QFB9 102 aa13.25□□□□□ -0.29
VIM-206ENST00000487938 ZNF702PQ9H963 129 aa13.25□□□□□ -0.29
VIM-206ENST00000487938 ANKRD17O75179 2603 aaKnown RBP13.25□□□□□ -0.29
VIM-206ENST00000487938 LINC01549A6NIU2 74 aa13.24□□□□□ -0.29
VIM-206ENST00000487938 PRM2P04554 102 aa13.24□□□□□ -0.29
VIM-206ENST00000487938 TCTEX1D4Q5JR98 221 aa13.24□□□□□ -0.29
VIM-206ENST00000487938 PGPEP1Q9NXJ5 209 aa13.24□□□□□ -0.29
VIM-206ENST00000487938 USP24Q9UPU5 2620 aa13.24□□□□□ -0.29
VIM-206ENST00000487938 MXRA5Q9NR99 2828 aa13.24□□□□□ -0.29
VIM-206ENST00000487938 F8W1H4 67 aa13.24□□□□□ -0.29
VIM-206ENST00000487938 RBMY1A1P0DJD3 496 aaKnown RBP13.24□□□□□ -0.29
VIM-206ENST00000487938 RBMY1CP0DJD4 496 aa13.24□□□□□ -0.29
VIM-206ENST00000487938 P0DMU3 169 aa13.24□□□□□ -0.29
VIM-206ENST00000487938 FAM231AP0DMU4 169 aa13.24□□□□□ -0.29
VIM-206ENST00000487938 FAM231CP0DMU5 169 aa13.24□□□□□ -0.29
VIM-206ENST00000487938 RBMY1FQ15415 496 aaKnown RBP13.24□□□□□ -0.29
VIM-206ENST00000487938 SFTA2Q6UW10 78 aa13.24□□□□□ -0.29
VIM-206ENST00000487938 IGHV3-73A0A0B4J1V6 119 aa13.23□□□□□ -0.29
VIM-206ENST00000487938 SLURP1P55000 103 aa13.23□□□□□ -0.29
VIM-206ENST00000487938 SH2D6Q7Z4S9 175 aa13.23□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 88.6 ms