RNA–Protein interactions for RNA: ENST00000487017.5

COL7A1-210, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 5,807 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-210ENST00000487017 Q8N7P7 452 aa12.69□□□□□ -0.38
COL7A1-210ENST00000487017 ORMDL1Q9P0S3 153 aa12.69□□□□□ -0.38
COL7A1-210ENST00000487017 Q6ZPA2 131 aa12.68□□□□□ -0.38
COL7A1-210ENST00000487017 IGLV10-54A0A075B6I4 117 aa12.68□□□□□ -0.38
COL7A1-210ENST00000487017 CCL24O00175 119 aa12.68□□□□□ -0.38
COL7A1-210ENST00000487017 A0A1W2PNU3 283 aaPredicted RBP12.68□□□□□ -0.38
COL7A1-210ENST00000487017 J3QKU1 62 aa12.68□□□□□ -0.38
COL7A1-210ENST00000487017 ICOSQ9Y6W8 199 aa12.68□□□□□ -0.38
COL7A1-210ENST00000487017 RPL39P62891 51 aaKnown RBP12.67□□□□□ -0.38
COL7A1-210ENST00000487017 TRAV4A0A0B4J268 109 aa12.67□□□□□ -0.38
COL7A1-210ENST00000487017 K7EQD1 137 aa12.67□□□□□ -0.38
COL7A1-210ENST00000487017 IGKV1D-37A0A075B6S9 117 aa12.67□□□□□ -0.38
COL7A1-210ENST00000487017 E9PLD3 99 aa12.67□□□□□ -0.38
COL7A1-210ENST00000487017 ODF1Q14990 250 aa12.66□□□□□ -0.38
COL7A1-210ENST00000487017 CRIP3Q6Q6R5 217 aa12.66□□□□□ -0.38
COL7A1-210ENST00000487017 KIAA1549LQ6ZVL6 1849 aa12.66□□□□□ -0.38
COL7A1-210ENST00000487017 IGHV4-30-2A0A087WSY4 118 aa12.66□□□□□ -0.38
COL7A1-210ENST00000487017 Q8N1Y9 231 aa12.66□□□□□ -0.38
COL7A1-210ENST00000487017 TIMM17AQ99595 171 aa12.66□□□□□ -0.38
COL7A1-210ENST00000487017 ESM1Q9NQ30 184 aa12.66□□□□□ -0.38
COL7A1-210ENST00000487017 A0A1B0GXF2 115 aa12.66□□□□□ -0.38
COL7A1-210ENST00000487017 TNRC6AQ8NDV7 1962 aaKnown RBP12.66□□□□□ -0.38
COL7A1-210ENST00000487017 TEN1Q86WV5 123 aa12.65□□□□□ -0.38
COL7A1-210ENST00000487017 ZNF295-AS1Q8N0V1 137 aa12.65□□□□□ -0.38
COL7A1-210ENST00000487017 DAZ2Q13117 558 aaKnown RBP12.65□□□□□ -0.38
COL7A1-210ENST00000487017 DAZ4Q86SG3 579 aaKnown RBP12.65□□□□□ -0.38
COL7A1-210ENST00000487017 DAZ3Q9NR90 486 aaKnown RBP12.65□□□□□ -0.38
COL7A1-210ENST00000487017 C2orf70A6NJV1 201 aa12.65□□□□□ -0.38
COL7A1-210ENST00000487017 BRWD1-AS2P59051 145 aa12.65□□□□□ -0.38
COL7A1-210ENST00000487017 WFDC2Q14508 124 aa12.65□□□□□ -0.38
COL7A1-210ENST00000487017 C1orf43Q9BWL3 253 aa12.65□□□□□ -0.38
COL7A1-210ENST00000487017 K7EMT4 169 aa12.65□□□□□ -0.38
COL7A1-210ENST00000487017 IGLV2-8P01709 118 aa12.65□□□□□ -0.38
COL7A1-210ENST00000487017 IGHV3-30P01768 117 aa12.65□□□□□ -0.38
COL7A1-210ENST00000487017 IGHV3-33P01772 117 aa12.65□□□□□ -0.38
COL7A1-210ENST00000487017 IGHV3-30-3P0DP02 117 aa12.65□□□□□ -0.38
COL7A1-210ENST00000487017 IGHV3-30-5P0DP03 117 aa12.65□□□□□ -0.38
COL7A1-210ENST00000487017 C16orf74Q96GX8 76 aa12.65□□□□□ -0.38
COL7A1-210ENST00000487017 ETDCA0A1B0GVM5 59 aa12.64□□□□□ -0.39
COL7A1-210ENST00000487017 ZFP36P26651 326 aaKnown RBP12.64□□□□□ -0.39
COL7A1-210ENST00000487017 LINC01620Q4KN68 170 aa12.64□□□□□ -0.39
COL7A1-210ENST00000487017 ADORA2A-AS1P86434 159 aa12.63□□□□□ -0.39
COL7A1-210ENST00000487017 C11orf86A6NJI1 115 aa12.63□□□□□ -0.39
COL7A1-210ENST00000487017 FANCD2OSQ96PS1 177 aa12.63□□□□□ -0.39
COL7A1-210ENST00000487017 PROP1O75360 226 aa12.63□□□□□ -0.39
COL7A1-210ENST00000487017 PLA2G5P39877 138 aa12.63□□□□□ -0.39
COL7A1-210ENST00000487017 C10orf105Q8TEF2 133 aa12.63□□□□□ -0.39
COL7A1-210ENST00000487017 SND1-IT1Q9HBX3 110 aa12.63□□□□□ -0.39
COL7A1-210ENST00000487017 C2orf16Q68DN1 1984 aa12.62□□□□□ -0.39
COL7A1-210ENST00000487017 CAMK2N2Q96S95 79 aa12.62□□□□□ -0.39
COL7A1-210ENST00000487017 GYPEP15421 78 aa12.62□□□□□ -0.39
COL7A1-210ENST00000487017 ZGRF1Q86YA3 2104 aa12.62□□□□□ -0.39
COL7A1-210ENST00000487017 PIFOQ8TCI5 191 aa12.62□□□□□ -0.39
COL7A1-210ENST00000487017 DENND4AQ7Z401 1863 aa12.62□□□□□ -0.39
COL7A1-210ENST00000487017 IGHV4OR15-8A0A075B7B6 117 aa12.62□□□□□ -0.39
COL7A1-210ENST00000487017 A0A087WW49 117 aa12.62□□□□□ -0.39
COL7A1-210ENST00000487017 H0YGX0 51 aa12.62□□□□□ -0.39
COL7A1-210ENST00000487017 SPATA12Q7Z6I5 190 aa12.62□□□□□ -0.39
COL7A1-210ENST00000487017 LINC00574Q9H8X3 128 aa12.62□□□□□ -0.39
COL7A1-210ENST00000487017 CREBBPQ92793 2442 aa12.62□□□□□ -0.39
COL7A1-210ENST00000487017 SPANXCQ9NY87 97 aa12.61□□□□□ -0.39
COL7A1-210ENST00000487017 WISP2O76076 250 aa12.61□□□□□ -0.39
COL7A1-210ENST00000487017 GPHB5Q86YW7 130 aa12.61□□□□□ -0.39
COL7A1-210ENST00000487017 COX7B2Q8TF08 81 aa12.61□□□□□ -0.39
COL7A1-210ENST00000487017 TMEM131Q92545 1883 aa12.6□□□□□ -0.39
COL7A1-210ENST00000487017 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP12.6□□□□□ -0.393e-7■□□□□ 9.2
COL7A1-210ENST00000487017 SIRPDQ9H106 197 aa12.6□□□□□ -0.39
COL7A1-210ENST00000487017 TIRAPP58753 221 aa12.6□□□□□ -0.39
COL7A1-210ENST00000487017 LINC00322Q6ZN03 302 aaPredicted RBP12.6□□□□□ -0.39
COL7A1-210ENST00000487017 FOXI1Q12951 378 aa12.6□□□□□ -0.39
COL7A1-210ENST00000487017 CHKB-CPT1BH3BT56 60 aa12.6□□□□□ -0.39
COL7A1-210ENST00000487017 TMEM258P61165 79 aa12.6□□□□□ -0.39
COL7A1-210ENST00000487017 ATP6V0E2Q8NHE4 81 aa12.59□□□□□ -0.39
COL7A1-210ENST00000487017 GDF5OSQ5U4N7 250 aa12.59□□□□□ -0.39
COL7A1-210ENST00000487017 HIST2H2BCQ6DN03 193 aa12.59□□□□□ -0.39
COL7A1-210ENST00000487017 DEFB1P60022 68 aa12.59□□□□□ -0.39
COL7A1-210ENST00000487017 LOXL1Q08397 574 aaPredicted RBP12.59□□□□□ -0.39
COL7A1-210ENST00000487017 EIF4EBP1Q13541 118 aaPredicted RBP12.59□□□□□ -0.39
COL7A1-210ENST00000487017 IGHG2P01859 326 aa12.59□□□□□ -0.39
COL7A1-210ENST00000487017 FUSP35637 526 aaKnown RBP eCLIP12.58□□□□□ -0.4
COL7A1-210ENST00000487017 TRBV7-3A0A075B6L6 115 aa12.58□□□□□ -0.4
COL7A1-210ENST00000487017 DEFB113Q30KQ7 82 aa12.58□□□□□ -0.4
COL7A1-210ENST00000487017 DAND5Q8N907 189 aa12.58□□□□□ -0.4
COL7A1-210ENST00000487017 LTBP2Q14767 1821 aa12.58□□□□□ -0.4
COL7A1-210ENST00000487017 CHD3Q12873 2000 aaKnown RBP12.58□□□□□ -0.4
COL7A1-210ENST00000487017 A0A0B4J2C4 111 aa12.57□□□□□ -0.4
COL7A1-210ENST00000487017 IGKV3D-7A0A0C4DH55 119 aa12.57□□□□□ -0.4
COL7A1-210ENST00000487017 G3V4G9 280 aa12.57□□□□□ -0.4
COL7A1-210ENST00000487017 ZNF80P51504 273 aaPredicted RBP12.57□□□□□ -0.4
COL7A1-210ENST00000487017 TMEM89A2RUT3 159 aa12.57□□□□□ -0.4
COL7A1-210ENST00000487017 UNQ9165/PRO28630Q6UXU0 137 aa12.57□□□□□ -0.4
COL7A1-210ENST00000487017 WFDC9Q8NEX5 89 aa12.56□□□□□ -0.4
COL7A1-210ENST00000487017 MLST8Q9BVC4 326 aa12.56□□□□□ -0.4
COL7A1-210ENST00000487017 NCR3O14931 201 aa12.56□□□□□ -0.4
COL7A1-210ENST00000487017 VSIG2Q96IQ7 327 aa12.56□□□□□ -0.4
COL7A1-210ENST00000487017 YPEL4Q96NS1 127 aa12.56□□□□□ -0.4
COL7A1-210ENST00000487017 COX7A2LO14548 114 aa12.56□□□□□ -0.4
COL7A1-210ENST00000487017 C1orf229Q6ZS94 237 aaPredicted RBP12.56□□□□□ -0.4
COL7A1-210ENST00000487017 TRAV26-1A0A087WT03 109 aa12.56□□□□□ -0.4
COL7A1-210ENST00000487017 TRBV10-2A0A0K0K1G8 114 aa12.56□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 102.5 ms