RNA–Protein interactions for RNA: ENST00000485943.1

USP40-216, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 568 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-216ENST00000485943 MUC4Q99102 2169 aa5.64□□□□□ -1.51
USP40-216ENST00000485943 TENM2Q9NT68 2774 aa5.63□□□□□ -1.51
USP40-216ENST00000485943 IGKV3D-20A0A0C4DH25 116 aa5.63□□□□□ -1.51
USP40-216ENST00000485943 PGPEP1LA6NFU8 196 aa5.63□□□□□ -1.51
USP40-216ENST00000485943 K7EQD1 137 aa5.63□□□□□ -1.51
USP40-216ENST00000485943 GATCO43716 136 aaKnown RBP5.63□□□□□ -1.51
USP40-216ENST00000485943 TRGC1P0CF51 173 aa5.63□□□□□ -1.51
USP40-216ENST00000485943 CRYBA4P53673 196 aa5.63□□□□□ -1.51
USP40-216ENST00000485943 CACNG7P62955 275 aa5.63□□□□□ -1.51
USP40-216ENST00000485943 RPL19P84098 196 aaKnown RBP5.63□□□□□ -1.51
USP40-216ENST00000485943 OR10J3Q5JRS4 329 aa5.63□□□□□ -1.51
USP40-216ENST00000485943 C9orf85Q96MD7 179 aa5.63□□□□□ -1.51
USP40-216ENST00000485943 FAM210AQ96ND0 272 aa5.63□□□□□ -1.51
USP40-216ENST00000485943 URGCP-MRPS24S4R325 110 aa5.63□□□□□ -1.51
USP40-216ENST00000485943 A0A1W2PPQ1 181 aa5.62□□□□□ -1.51
USP40-216ENST00000485943 F2Z2F3 143 aa5.62□□□□□ -1.51
USP40-216ENST00000485943 RS1O15537 224 aa5.62□□□□□ -1.51
USP40-216ENST00000485943 RNASE3P12724 160 aaKnown RBP5.62□□□□□ -1.51
USP40-216ENST00000485943 EVI2AP22794 236 aa5.62□□□□□ -1.51
USP40-216ENST00000485943 RPL36AP83881 106 aaKnown RBP5.62□□□□□ -1.51
USP40-216ENST00000485943 FHL2Q14192 279 aa5.62□□□□□ -1.51
USP40-216ENST00000485943 PIK3CD-AS1Q5SR53 167 aa5.62□□□□□ -1.51
USP40-216ENST00000485943 CFAP126Q5VTH2 177 aa5.62□□□□□ -1.51
USP40-216ENST00000485943 Q6ZSN1 163 aa5.62□□□□□ -1.51
USP40-216ENST00000485943 RPL36ALQ969Q0 106 aaKnown RBP5.62□□□□□ -1.51
USP40-216ENST00000485943 RPP21Q9H633 154 aaKnown RBP5.62□□□□□ -1.51
USP40-216ENST00000485943 Q9H8V8 135 aa5.62□□□□□ -1.51
USP40-216ENST00000485943 C11orf21Q9P2W6 132 aa5.62□□□□□ -1.51
USP40-216ENST00000485943 DNAH7Q8WXX0 4024 aa5.62□□□□□ -1.51
USP40-216ENST00000485943 MUC21A0A0G2JKD1 596 aa5.61□□□□□ -1.51
USP40-216ENST00000485943 MUC21A0A140T8X8 626 aa5.61□□□□□ -1.51
USP40-216ENST00000485943 TRBV6-4A0A1B0GX49 114 aa5.61□□□□□ -1.51
USP40-216ENST00000485943 GAGE12JA6NER3 117 aa5.61□□□□□ -1.51
USP40-216ENST00000485943 A8MWL6 223 aa5.61□□□□□ -1.51
USP40-216ENST00000485943 H7C1H1 209 aa5.61□□□□□ -1.51
USP40-216ENST00000485943 SIVA1O15304 175 aa5.61□□□□□ -1.51
USP40-216ENST00000485943 CXCL1P09341 107 aa5.61□□□□□ -1.51
USP40-216ENST00000485943 CRIP1P50238 77 aa5.61□□□□□ -1.51
USP40-216ENST00000485943 GAGE1Q13065 139 aa5.61□□□□□ -1.51
USP40-216ENST00000485943 GAGE4Q13068 117 aa5.61□□□□□ -1.51
USP40-216ENST00000485943 GAGE5Q13069 117 aa5.61□□□□□ -1.51
USP40-216ENST00000485943 TWIST1Q15672 202 aa5.61□□□□□ -1.51
USP40-216ENST00000485943 ADIRFQ15847 76 aa5.61□□□□□ -1.51
USP40-216ENST00000485943 FAM74A3Q4VXF1 159 aa5.61□□□□□ -1.51
USP40-216ENST00000485943 C1orf134Q5TEV5 83 aa5.61□□□□□ -1.51
USP40-216ENST00000485943 ZFP2Q6ZN57 461 aa5.61□□□□□ -1.51
USP40-216ENST00000485943 COX8CQ7Z4L0 72 aa5.61□□□□□ -1.51
USP40-216ENST00000485943 ATP6V0E2Q8NHE4 81 aa5.61□□□□□ -1.51
USP40-216ENST00000485943 PTH2Q96A98 100 aa5.61□□□□□ -1.51
USP40-216ENST00000485943 LY96Q9Y6Y9 160 aa5.61□□□□□ -1.51
USP40-216ENST00000485943 STARD9Q9P2P6 4700 aa5.6□□□□□ -1.51
USP40-216ENST00000485943 NXPH4O95158 308 aa5.6□□□□□ -1.51
USP40-216ENST00000485943 GATA1P15976 413 aaPredicted RBP5.6□□□□□ -1.51
USP40-216ENST00000485943 TMEM241Q24JQ0 296 aa5.6□□□□□ -1.51
USP40-216ENST00000485943 DNLZQ5SXM8 178 aa5.6□□□□□ -1.51
USP40-216ENST00000485943 SLC25A29Q8N8R3 303 aa5.6□□□□□ -1.51
USP40-216ENST00000485943 OR10AG1Q8NH19 301 aa5.6□□□□□ -1.51
USP40-216ENST00000485943 VSIG2Q96IQ7 327 aa5.6□□□□□ -1.51
USP40-216ENST00000485943 MLST8Q9BVC4 326 aa5.6□□□□□ -1.51
USP40-216ENST00000485943 SMDT1Q9H4I9 107 aa5.6□□□□□ -1.51
USP40-216ENST00000485943 MRPS16Q9Y3D3 137 aaKnown RBP5.6□□□□□ -1.51
USP40-216ENST00000485943 LINC00588Q9Y4M8 146 aa5.6□□□□□ -1.51
USP40-216ENST00000485943 TNFRSF18Q9Y5U5 241 aa5.6□□□□□ -1.51
USP40-216ENST00000485943 PSCAO43653 123 aa5.59□□□□□ -1.51
USP40-216ENST00000485943 OR5AL1P0C617 328 aa5.59□□□□□ -1.51
USP40-216ENST00000485943 GZMBP10144 247 aa5.59□□□□□ -1.51
USP40-216ENST00000485943 ESRGQ1W209 222 aa5.59□□□□□ -1.51
USP40-216ENST00000485943 LINC00336Q6ZUF6 198 aa5.59□□□□□ -1.51
USP40-216ENST00000485943 C10orf126Q8N4M7 172 aa5.59□□□□□ -1.51
USP40-216ENST00000485943 C14orf178Q8N769 122 aaPredicted RBP5.59□□□□□ -1.51
USP40-216ENST00000485943 ZNRF2Q8NHG8 242 aa5.59□□□□□ -1.51
USP40-216ENST00000485943 OCC1Q8TAD7 63 aa5.59□□□□□ -1.51
USP40-216ENST00000485943 SFRP2Q96HF1 295 aa5.59□□□□□ -1.51
USP40-216ENST00000485943 RNASE7Q9H1E1 156 aaKnown RBP5.59□□□□□ -1.51
USP40-216ENST00000485943 A0A087WWC5 75 aa5.58□□□□□ -1.52
USP40-216ENST00000485943 NBDYA0A0U1RRE5 68 aa5.58□□□□□ -1.52
USP40-216ENST00000485943 TMEM262E9PQX1 116 aa5.58□□□□□ -1.52
USP40-216ENST00000485943 RAB4BP61018 213 aa5.58□□□□□ -1.52
USP40-216ENST00000485943 LYPD5Q6UWN5 251 aa5.58□□□□□ -1.52
USP40-216ENST00000485943 LYZL1Q6UWQ5 148 aa5.58□□□□□ -1.52
USP40-216ENST00000485943 GTSF1LQ9H1H1 148 aa5.58□□□□□ -1.52
USP40-216ENST00000485943 JPT2Q9H910 190 aa5.58□□□□□ -1.52
USP40-216ENST00000485943 NAT8Q9UHE5 227 aa5.58□□□□□ -1.52
USP40-216ENST00000485943 A0A087WX48 190 aa5.57□□□□□ -1.52
USP40-216ENST00000485943 TRBV10-1A0A0K0K1A3 114 aa5.57□□□□□ -1.52
USP40-216ENST00000485943 LOC100131303A0A0U1RQF7 123 aa5.57□□□□□ -1.52
USP40-216ENST00000485943 SNAI2O43623 268 aa5.57□□□□□ -1.52
USP40-216ENST00000485943 NDUFS6O75380 124 aaKnown RBP5.57□□□□□ -1.52
USP40-216ENST00000485943 SRP19P09132 144 aaKnown RBP5.57□□□□□ -1.52
USP40-216ENST00000485943 TMEM97Q5BJF2 176 aa5.57□□□□□ -1.52
USP40-216ENST00000485943 NFE4Q86UQ8 179 aa5.57□□□□□ -1.52
USP40-216ENST00000485943 C6orf223Q8N319 242 aa5.57□□□□□ -1.52
USP40-216ENST00000485943 OR10G8Q8NGN5 311 aa5.57□□□□□ -1.52
USP40-216ENST00000485943 LYPD6BQ8NI32 183 aa5.57□□□□□ -1.52
USP40-216ENST00000485943 PGLYRP4Q96LB8 373 aa5.57□□□□□ -1.52
USP40-216ENST00000485943 KRTAP9-2Q9BYQ4 174 aa5.57□□□□□ -1.52
USP40-216ENST00000485943 DPH3P1Q9H4G8 78 aa5.57□□□□□ -1.52
USP40-216ENST00000485943 CSMD3Q7Z407 3707 aa5.56□□□□□ -1.52
USP40-216ENST00000485943 TRBV7-3A0A075B6L6 115 aa5.56□□□□□ -1.52
USP40-216ENST00000485943 IGHV3-38A0A0C4DH36 116 aa5.56□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 48.6 ms