RNA–Protein interactions for RNA: ENST00000473405.1

CCDC88B-206, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best)

Gene CCDC88B, Length 783 nt, Biotype processed transcript, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-206ENST00000473405 LTAP01374 205 aa12.49□□□□□ -0.41
CCDC88B-206ENST00000473405 WFDC2Q14508 124 aa12.49□□□□□ -0.41
CCDC88B-206ENST00000473405 AKAP14Q86UN6 197 aa12.49□□□□□ -0.41
CCDC88B-206ENST00000473405 TCEAL7Q9BRU2 100 aa12.49□□□□□ -0.41
CCDC88B-206ENST00000473405 TMEM70Q9BUB7 260 aa12.49□□□□□ -0.41
CCDC88B-206ENST00000473405 RHODO00212 210 aa12.48□□□□□ -0.41
CCDC88B-206ENST00000473405 UBE2G1P62253 170 aa12.48□□□□□ -0.41
CCDC88B-206ENST00000473405 LINC01559Q495D7 138 aa12.48□□□□□ -0.41
CCDC88B-206ENST00000473405 DAZ4Q86SG3 579 aaKnown RBP12.48□□□□□ -0.41
CCDC88B-206ENST00000473405 SYT8Q8NBV8 401 aa12.48□□□□□ -0.41
CCDC88B-206ENST00000473405 OR11H4Q8NGC9 324 aa12.48□□□□□ -0.41
CCDC88B-206ENST00000473405 FRZBQ92765 325 aa12.48□□□□□ -0.41
CCDC88B-206ENST00000473405 DAZ3Q9NR90 486 aaKnown RBP12.48□□□□□ -0.41
CCDC88B-206ENST00000473405 SMR3BP02814 79 aaPredicted RBP12.47□□□□□ -0.41
CCDC88B-206ENST00000473405 INAFM2P0DMQ5 153 aa12.47□□□□□ -0.41
CCDC88B-206ENST00000473405 FAM74A4Q5TZK3 123 aa12.47□□□□□ -0.41
CCDC88B-206ENST00000473405 CST9LP1Q5W188 147 aa12.47□□□□□ -0.41
CCDC88B-206ENST00000473405 SFRP2Q96HF1 295 aa12.47□□□□□ -0.41
CCDC88B-206ENST00000473405 A0A087WWC5 75 aa12.46□□□□□ -0.41
CCDC88B-206ENST00000473405 A0A087WWL8 130 aa12.46□□□□□ -0.41
CCDC88B-206ENST00000473405 TMSB15BA0A087X1C1 80 aa12.46□□□□□ -0.41
CCDC88B-206ENST00000473405 TM2D2Q9BX73 214 aa12.46□□□□□ -0.41
CCDC88B-206ENST00000473405 PHLDA3Q9Y5J5 127 aa12.46□□□□□ -0.41
CCDC88B-206ENST00000473405 M0R381 172 aa12.45□□□□□ -0.42
CCDC88B-206ENST00000473405 ZNF345Q14585 488 aa12.45□□□□□ -0.42
CCDC88B-206ENST00000473405 KCNRGQ8N5I3 272 aa12.45□□□□□ -0.42
CCDC88B-206ENST00000473405 STOML3Q8TAV4 291 aa12.45□□□□□ -0.42
CCDC88B-206ENST00000473405 TRAV8-3A0A0A6YYJ7 113 aa12.44□□□□□ -0.42
CCDC88B-206ENST00000473405 PAGE4O60829 102 aa12.44□□□□□ -0.42
CCDC88B-206ENST00000473405 TPT1P13693 172 aaKnown RBP12.44□□□□□ -0.42
CCDC88B-206ENST00000473405 AKR1C3P42330 323 aa12.44□□□□□ -0.42
CCDC88B-206ENST00000473405 FAM30AQ9NZY2 134 aa12.44□□□□□ -0.42
CCDC88B-206ENST00000473405 C1QBP02746 253 aa12.43□□□□□ -0.42
CCDC88B-206ENST00000473405 NIT1Q86X76 327 aa12.43□□□□□ -0.42
CCDC88B-206ENST00000473405 ZFP82Q8N141 532 aa12.43□□□□□ -0.42
CCDC88B-206ENST00000473405 HMSDA8MTL9 139 aa12.42□□□□□ -0.42
CCDC88B-206ENST00000473405 LECT2O14960 151 aa12.42□□□□□ -0.42
CCDC88B-206ENST00000473405 SEC11BP0C7V7 166 aa12.42□□□□□ -0.42
CCDC88B-206ENST00000473405 FAM213BQ8TBF2 198 aa12.42□□□□□ -0.42
CCDC88B-206ENST00000473405 SFT2D1Q8WV19 159 aa12.42□□□□□ -0.42
CCDC88B-206ENST00000473405 MBD3L1Q8WWY6 194 aa12.42□□□□□ -0.42
CCDC88B-206ENST00000473405 DNAJC30Q96LL9 226 aa12.42□□□□□ -0.42
CCDC88B-206ENST00000473405 SCO2A0A1W2PP80 73 aa12.41□□□□□ -0.42
CCDC88B-206ENST00000473405 RPL19P84098 196 aaKnown RBP12.41□□□□□ -0.42
CCDC88B-206ENST00000473405 TOR2AQ5JU69 321 aa12.41□□□□□ -0.42
CCDC88B-206ENST00000473405 TRBV10-1A0A0K0K1A3 114 aa12.4□□□□□ -0.42
CCDC88B-206ENST00000473405 A0A1B0GV50 99 aa12.4□□□□□ -0.42
CCDC88B-206ENST00000473405 UMAD1C9J7I0 102 aa12.4□□□□□ -0.42
CCDC88B-206ENST00000473405 UBE2D3P61077 147 aa12.4□□□□□ -0.42
CCDC88B-206ENST00000473405 UBE2D2P62837 147 aa12.4□□□□□ -0.42
CCDC88B-206ENST00000473405 Q6ZSA8 131 aa12.4□□□□□ -0.42
CCDC88B-206ENST00000473405 MLST8Q9BVC4 326 aa12.4□□□□□ -0.42
CCDC88B-206ENST00000473405 OR10AG1Q8NH19 301 aa12.39□□□□□ -0.43
CCDC88B-206ENST00000473405 URGCP-MRPS24S4R325 110 aa12.39□□□□□ -0.43
CCDC88B-206ENST00000473405 FAM229AH3BQW9 127 aa12.38□□□□□ -0.43
CCDC88B-206ENST00000473405 BCL2L11O43521 198 aa12.38□□□□□ -0.43
CCDC88B-206ENST00000473405 S100A9P06702 114 aaKnown RBP12.38□□□□□ -0.43
CCDC88B-206ENST00000473405 CXCL1P09341 107 aa12.38□□□□□ -0.43
CCDC88B-206ENST00000473405 BAALCQ8WXS3 180 aa12.38□□□□□ -0.43
CCDC88B-206ENST00000473405 KLK12Q9UKR0 248 aa12.38□□□□□ -0.43
CCDC88B-206ENST00000473405 IGLV2-33A0A075B6J2 118 aaPredicted RBP12.37□□□□□ -0.43
CCDC88B-206ENST00000473405 TRBV7-3A0A075B6L6 115 aa12.37□□□□□ -0.43
CCDC88B-206ENST00000473405 RPL36AP83881 106 aaKnown RBP12.37□□□□□ -0.43
CCDC88B-206ENST00000473405 OR10G8Q8NGN5 311 aa12.37□□□□□ -0.43
CCDC88B-206ENST00000473405 RPL36ALQ969Q0 106 aaKnown RBP12.37□□□□□ -0.43
CCDC88B-206ENST00000473405 ZNF471Q9BX82 626 aaPredicted RBP12.37□□□□□ -0.43
CCDC88B-206ENST00000473405 COX11Q9Y6N1 276 aa12.37□□□□□ -0.43
CCDC88B-206ENST00000473405 SNAI2O43623 268 aa12.36□□□□□ -0.43
CCDC88B-206ENST00000473405 PFDN1O60925 122 aa12.36□□□□□ -0.43
CCDC88B-206ENST00000473405 PRR27Q6MZM9 219 aa12.36□□□□□ -0.43
CCDC88B-206ENST00000473405 C9orf62Q8N4C0 152 aa12.36□□□□□ -0.43
CCDC88B-206ENST00000473405 CHCHD7Q9BUK0 85 aa12.36□□□□□ -0.43
CCDC88B-206ENST00000473405 A0A0D9SG52 128 aa12.35□□□□□ -0.43
CCDC88B-206ENST00000473405 KANTRA0A1W2PQU2 76 aa12.35□□□□□ -0.43
CCDC88B-206ENST00000473405 RAB4BP61018 213 aa12.35□□□□□ -0.43
CCDC88B-206ENST00000473405 BAGE2Q86Y30 109 aa12.35□□□□□ -0.43
CCDC88B-206ENST00000473405 NEXN-AS1Q8NBZ9 246 aa12.35□□□□□ -0.43
CCDC88B-206ENST00000473405 RMI2Q96E14 147 aa12.35□□□□□ -0.43
CCDC88B-206ENST00000473405 SSBP4Q9BWG4 385 aaPredicted RBP12.35□□□□□ -0.43
CCDC88B-206ENST00000473405 IGKV2D-24A0A075B6R9 120 aa12.34□□□□□ -0.43
CCDC88B-206ENST00000473405 A0A087WX48 190 aa12.34□□□□□ -0.43
CCDC88B-206ENST00000473405 H2AFB1P0C5Y9 115 aa12.34□□□□□ -0.43
CCDC88B-206ENST00000473405 ZNF56Q15929 161 aa12.34□□□□□ -0.43
CCDC88B-206ENST00000473405 LINC01620Q4KN68 170 aa12.34□□□□□ -0.43
CCDC88B-206ENST00000473405 ATRAIDQ6UW56 229 aa12.34□□□□□ -0.43
CCDC88B-206ENST00000473405 MUC21A0A0G2JKD1 596 aa12.33□□□□□ -0.44
CCDC88B-206ENST00000473405 MUC21A0A140T8X8 626 aa12.33□□□□□ -0.44
CCDC88B-206ENST00000473405 OR5AL1P0C617 328 aa12.33□□□□□ -0.44
CCDC88B-206ENST00000473405 NKX2-5P52952 324 aaPredicted RBP12.33□□□□□ -0.44
CCDC88B-206ENST00000473405 UBE2WQ96B02 151 aa12.33□□□□□ -0.44
CCDC88B-206ENST00000473405 TRBV6-8A0A0A6YYG3 113 aa12.32□□□□□ -0.44
CCDC88B-206ENST00000473405 RPL35P42766 123 aaKnown RBP12.32□□□□□ -0.44
CCDC88B-206ENST00000473405 TMUB2Q71RG4 321 aa12.32□□□□□ -0.44
CCDC88B-206ENST00000473405 DERL1Q9BUN8 251 aa12.32□□□□□ -0.44
CCDC88B-206ENST00000473405 CCL20P78556 96 aa12.31□□□□□ -0.44
CCDC88B-206ENST00000473405 ELOBQ15370 118 aa12.31□□□□□ -0.44
CCDC88B-206ENST00000473405 Q8N976 141 aa12.31□□□□□ -0.44
CCDC88B-206ENST00000473405 C11orf52Q96A22 123 aa12.31□□□□□ -0.44
CCDC88B-206ENST00000473405 MPV17L2Q567V2 206 aa12.3□□□□□ -0.44
CCDC88B-206ENST00000473405 SPANXN1Q5VSR9 72 aa12.3□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms