RNA–Protein interactions for RNA: ENST00000473191.1

USP40-212, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 590 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-212ENST00000473191 RPL19P84098 196 aaKnown RBP11.1□□□□□ -0.63
USP40-212ENST00000473191 PIK3CD-AS1Q5SR53 167 aa11.1□□□□□ -0.63
USP40-212ENST00000473191 FAM162BQ5T6X4 162 aa11.1□□□□□ -0.63
USP40-212ENST00000473191 DAZ4Q86SG3 579 aaKnown RBP11.1□□□□□ -0.63
USP40-212ENST00000473191 DAZ3Q9NR90 486 aaKnown RBP11.1□□□□□ -0.63
USP40-212ENST00000473191 SCO2A0A1W2PP80 73 aa11.09□□□□□ -0.63
USP40-212ENST00000473191 EPM2AB3EWF7 344 aa11.09□□□□□ -0.63
USP40-212ENST00000473191 M0R381 172 aa11.09□□□□□ -0.63
USP40-212ENST00000473191 LINC01559Q495D7 138 aa11.09□□□□□ -0.63
USP40-212ENST00000473191 Q8N814 137 aa11.09□□□□□ -0.63
USP40-212ENST00000473191 FAM213BQ8TBF2 198 aa11.09□□□□□ -0.63
USP40-212ENST00000473191 IGLV5-52A0A0A0MRZ9 124 aa11.08□□□□□ -0.64
USP40-212ENST00000473191 TRBV6-1A0A0K0K1D8 114 aa11.08□□□□□ -0.64
USP40-212ENST00000473191 AKR1C3P42330 323 aa11.08□□□□□ -0.64
USP40-212ENST00000473191 ZNF345Q14585 488 aa11.08□□□□□ -0.64
USP40-212ENST00000473191 SFT2D1Q8WV19 159 aa11.08□□□□□ -0.64
USP40-212ENST00000473191 SFRP2Q96HF1 295 aa11.08□□□□□ -0.64
USP40-212ENST00000473191 MBD3L1Q8WWY6 194 aa11.07□□□□□ -0.64
USP40-212ENST00000473191 FAM30AQ9NZY2 134 aa11.07□□□□□ -0.64
USP40-212ENST00000473191 PHLDA3Q9Y5J5 127 aa11.07□□□□□ -0.64
USP40-212ENST00000473191 VPS13BQ7Z7G8 4022 aa11.06□□□□□ -0.64
USP40-212ENST00000473191 LECT2O14960 151 aa11.06□□□□□ -0.64
USP40-212ENST00000473191 SEC11BP0C7V7 166 aa11.06□□□□□ -0.64
USP40-212ENST00000473191 Q5VSD8 79 aa11.06□□□□□ -0.64
USP40-212ENST00000473191 SYT8Q8NBV8 401 aa11.06□□□□□ -0.64
USP40-212ENST00000473191 STOML3Q8TAV4 291 aa11.06□□□□□ -0.64
USP40-212ENST00000473191 ZNF471Q9BX82 626 aaPredicted RBP11.06□□□□□ -0.64
USP40-212ENST00000473191 MUC21A0A0G2JKD1 596 aa11.05□□□□□ -0.64
USP40-212ENST00000473191 MUC21A0A140T8X8 626 aa11.05□□□□□ -0.64
USP40-212ENST00000473191 HMSDA8MTL9 139 aa11.05□□□□□ -0.64
USP40-212ENST00000473191 BCL2L11O43521 198 aa11.05□□□□□ -0.64
USP40-212ENST00000473191 TPT1P13693 172 aaKnown RBP11.05□□□□□ -0.64
USP40-212ENST00000473191 NKX2-5P52952 324 aaPredicted RBP11.05□□□□□ -0.64
USP40-212ENST00000473191 MLST8Q9BVC4 326 aa11.05□□□□□ -0.64
USP40-212ENST00000473191 CCL20P78556 96 aa11.04□□□□□ -0.64
USP40-212ENST00000473191 OR10AG1Q8NH19 301 aa11.04□□□□□ -0.64
USP40-212ENST00000473191 RHODO00212 210 aa11.03□□□□□ -0.64
USP40-212ENST00000473191 LAGE3Q14657 143 aa11.03□□□□□ -0.64
USP40-212ENST00000473191 TCEAL7Q9BRU2 100 aa11.03□□□□□ -0.64
USP40-212ENST00000473191 SSTP61278 116 aa11.02□□□□□ -0.65
USP40-212ENST00000473191 NIT1Q86X76 327 aa11.02□□□□□ -0.65
USP40-212ENST00000473191 BAGE2Q86Y30 109 aa11.02□□□□□ -0.65
USP40-212ENST00000473191 ZFP82Q8N141 532 aa11.02□□□□□ -0.65
USP40-212ENST00000473191 DERL1Q9BUN8 251 aa11.02□□□□□ -0.65
USP40-212ENST00000473191 A0A0D9SG52 128 aa11.01□□□□□ -0.65
USP40-212ENST00000473191 KANTRA0A1W2PQU2 76 aa11.01□□□□□ -0.65
USP40-212ENST00000473191 UMAD1C9J7I0 102 aa11.01□□□□□ -0.65
USP40-212ENST00000473191 H2AFB1P0C5Y9 115 aa11.01□□□□□ -0.65
USP40-212ENST00000473191 INAFM2P0DMQ5 153 aa11.01□□□□□ -0.65
USP40-212ENST00000473191 LINC01620Q4KN68 170 aa11.01□□□□□ -0.65
USP40-212ENST00000473191 PRR27Q6MZM9 219 aa11.01□□□□□ -0.65
USP40-212ENST00000473191 TMUB2Q71RG4 321 aa11.01□□□□□ -0.65
USP40-212ENST00000473191 NTN5Q8WTR8 489 aaPredicted RBP11.01□□□□□ -0.65
USP40-212ENST00000473191 BAALCQ8WXS3 180 aa11.01□□□□□ -0.65
USP40-212ENST00000473191 HERC1Q15751 4861 aa11.01□□□□□ -0.65
USP40-212ENST00000473191 IGLV2-33A0A075B6J2 118 aaPredicted RBP11□□□□□ -0.65
USP40-212ENST00000473191 UBE2D3P61077 147 aa11□□□□□ -0.65
USP40-212ENST00000473191 UBE2D2P62837 147 aa11□□□□□ -0.65
USP40-212ENST00000473191 C9orf62Q8N4C0 152 aa11□□□□□ -0.65
USP40-212ENST00000473191 KLK12Q9UKR0 248 aa11□□□□□ -0.65
USP40-212ENST00000473191 A0A087WWC5 75 aa10.99□□□□□ -0.65
USP40-212ENST00000473191 SNAI2O43623 268 aa10.99□□□□□ -0.65
USP40-212ENST00000473191 NEXN-AS1Q8NBZ9 246 aa10.99□□□□□ -0.65
USP40-212ENST00000473191 FRZBQ92765 325 aa10.99□□□□□ -0.65
USP40-212ENST00000473191 TM2D2Q9BX73 214 aa10.99□□□□□ -0.65
USP40-212ENST00000473191 BOLA1Q9Y3E2 137 aa10.99□□□□□ -0.65
USP40-212ENST00000473191 TRBV7-3A0A075B6L6 115 aa10.98□□□□□ -0.65
USP40-212ENST00000473191 TRAV8-3A0A0A6YYJ7 113 aa10.98□□□□□ -0.65
USP40-212ENST00000473191 RPL35P42766 123 aaKnown RBP10.98□□□□□ -0.65
USP40-212ENST00000473191 TMEM70Q9BUB7 260 aa10.98□□□□□ -0.65
USP40-212ENST00000473191 SSBP4Q9BWG4 385 aaPredicted RBP10.98□□□□□ -0.65
USP40-212ENST00000473191 GNG13Q9P2W3 67 aa10.98□□□□□ -0.65
USP40-212ENST00000473191 TRBV10-1A0A0K0K1A3 114 aa10.97□□□□□ -0.65
USP40-212ENST00000473191 S100A9P06702 114 aaKnown RBP10.97□□□□□ -0.65
USP40-212ENST00000473191 GZMBP10144 247 aa10.97□□□□□ -0.65
USP40-212ENST00000473191 RPL36AP83881 106 aaKnown RBP10.97□□□□□ -0.65
USP40-212ENST00000473191 ZNF56Q15929 161 aa10.97□□□□□ -0.65
USP40-212ENST00000473191 RPL36ALQ969Q0 106 aaKnown RBP10.97□□□□□ -0.65
USP40-212ENST00000473191 IGKV2D-24A0A075B6R9 120 aa10.96□□□□□ -0.65
USP40-212ENST00000473191 RBFOX3A6NFN3 312 aa10.96□□□□□ -0.65
USP40-212ENST00000473191 IGLV2-8P01709 118 aa10.96□□□□□ -0.65
USP40-212ENST00000473191 RAB4BP61018 213 aa10.96□□□□□ -0.65
USP40-212ENST00000473191 OR10G8Q8NGN5 311 aa10.96□□□□□ -0.65
USP40-212ENST00000473191 UBE2WQ96B02 151 aa10.96□□□□□ -0.65
USP40-212ENST00000473191 KIF25-AS1Q9Y6Z4 181 aa10.96□□□□□ -0.65
USP40-212ENST00000473191 MYCBP2O75592 4640 aa10.96□□□□□ -0.66
USP40-212ENST00000473191 RAB19A4D1S5 217 aa10.95□□□□□ -0.66
USP40-212ENST00000473191 CXCL1P09341 107 aa10.95□□□□□ -0.66
USP40-212ENST00000473191 URGCP-MRPS24S4R325 110 aa10.95□□□□□ -0.66
USP40-212ENST00000473191 OR5AL1P0C617 328 aa10.94□□□□□ -0.66
USP40-212ENST00000473191 MPV17L2Q567V2 206 aa10.94□□□□□ -0.66
USP40-212ENST00000473191 CENPWQ5EE01 88 aa10.94□□□□□ -0.66
USP40-212ENST00000473191 SPANXN1Q5VSR9 72 aa10.94□□□□□ -0.66
USP40-212ENST00000473191 ENHOQ6UWT2 76 aa10.94□□□□□ -0.66
USP40-212ENST00000473191 NTM-AS1Q6ZSK4 140 aa10.94□□□□□ -0.66
USP40-212ENST00000473191 C11orf52Q96A22 123 aa10.94□□□□□ -0.66
USP40-212ENST00000473191 A0A087WX48 190 aa10.93□□□□□ -0.66
USP40-212ENST00000473191 TRBV6-8A0A0A6YYG3 113 aa10.93□□□□□ -0.66
USP40-212ENST00000473191 EIF5AP63241 154 aaKnown RBP10.93□□□□□ -0.66
USP40-212ENST00000473191 TOR2AQ5JU69 321 aa10.93□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 76 ms