RNA–Protein interactions for RNA: ENST00000472880.1

COL9A3-210, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 959 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-210ENST00000472880 RHODO00212 210 aa13.14□□□□□ -0.31
COL9A3-210ENST00000472880 TOR2AQ5JU69 321 aa13.14□□□□□ -0.31
COL9A3-210ENST00000472880 AKAP14Q86UN6 197 aa13.14□□□□□ -0.31
COL9A3-210ENST00000472880 TCEAL7Q9BRU2 100 aa13.14□□□□□ -0.31
COL9A3-210ENST00000472880 JPT2Q9H910 190 aa13.14□□□□□ -0.31
COL9A3-210ENST00000472880 A0A1B0GV50 99 aa13.13□□□□□ -0.31
COL9A3-210ENST00000472880 M0R036 132 aa13.13□□□□□ -0.31
COL9A3-210ENST00000472880 PAGE4O60829 102 aa13.13□□□□□ -0.31
COL9A3-210ENST00000472880 H2AFB1P0C5Y9 115 aa13.13□□□□□ -0.31
COL9A3-210ENST00000472880 CST9LP1Q5W188 147 aa13.13□□□□□ -0.31
COL9A3-210ENST00000472880 C14orf178Q8N769 122 aaPredicted RBP13.13□□□□□ -0.31
COL9A3-210ENST00000472880 SAMD10Q9BYL1 202 aa13.13□□□□□ -0.31
COL9A3-210ENST00000472880 HERC1Q15751 4861 aa13.12□□□□□ -0.31
COL9A3-210ENST00000472880 UBE2G1P62253 170 aa13.12□□□□□ -0.31
COL9A3-210ENST00000472880 FAM74A4Q5TZK3 123 aa13.12□□□□□ -0.31
COL9A3-210ENST00000472880 DMRTA1Q5VZB9 504 aa13.12□□□□□ -0.31
COL9A3-210ENST00000472880 UFSP1Q6NVU6 142 aa13.12□□□□□ -0.31
COL9A3-210ENST00000472880 DAZ4Q86SG3 579 aaKnown RBP13.12□□□□□ -0.31
COL9A3-210ENST00000472880 ZC2HC1AQ96GY0 325 aa13.12□□□□□ -0.31
COL9A3-210ENST00000472880 DAZ3Q9NR90 486 aaKnown RBP13.12□□□□□ -0.31
COL9A3-210ENST00000472880 DMBT1Q9UGM3 2413 aaPredicted RBP13.11□□□□□ -0.31
COL9A3-210ENST00000472880 KRBOX1C9JBD0 128 aa13.11□□□□□ -0.31
COL9A3-210ENST00000472880 SH2D1AO60880 128 aa13.11□□□□□ -0.31
COL9A3-210ENST00000472880 ARMS2P0C7Q2 107 aa13.11□□□□□ -0.31
COL9A3-210ENST00000472880 WFDC2Q14508 124 aa13.11□□□□□ -0.31
COL9A3-210ENST00000472880 EIF5AL1Q6IS14 154 aaKnown RBP13.11□□□□□ -0.31
COL9A3-210ENST00000472880 FMC1Q96HJ9 113 aa13.11□□□□□ -0.31
COL9A3-210ENST00000472880 Q9UF83 564 aa13.11□□□□□ -0.31
COL9A3-210ENST00000472880 ZFP30Q9Y2G7 519 aa13.11□□□□□ -0.31
COL9A3-210ENST00000472880 URGCP-MRPS24S4R325 110 aa13.11□□□□□ -0.31
COL9A3-210ENST00000472880 GRIFINA4D1Z8 144 aa13.1□□□□□ -0.31
COL9A3-210ENST00000472880 LECT2O14960 151 aa13.1□□□□□ -0.31
COL9A3-210ENST00000472880 CRIP1P50238 77 aa13.1□□□□□ -0.31
COL9A3-210ENST00000472880 DNLZQ5SXM8 178 aa13.1□□□□□ -0.31
COL9A3-210ENST00000472880 FAM162BQ5T6X4 162 aa13.1□□□□□ -0.31
COL9A3-210ENST00000472880 FAM30AQ9NZY2 134 aa13.1□□□□□ -0.31
COL9A3-210ENST00000472880 PHLDA3Q9Y5J5 127 aa13.1□□□□□ -0.31
COL9A3-210ENST00000472880 VPS13BQ7Z7G8 4022 aa13.1□□□□□ -0.31
COL9A3-210ENST00000472880 RAB5CP51148 216 aa13.09□□□□□ -0.31
COL9A3-210ENST00000472880 SLC51BQ86UW2 128 aa13.09□□□□□ -0.31
COL9A3-210ENST00000472880 COX11Q9Y6N1 276 aa13.09□□□□□ -0.31
COL9A3-210ENST00000472880 A0A087WWL8 130 aa13.08□□□□□ -0.32
COL9A3-210ENST00000472880 TRBV6-1A0A0K0K1D8 114 aa13.08□□□□□ -0.32
COL9A3-210ENST00000472880 AKR1C3P42330 323 aa13.08□□□□□ -0.32
COL9A3-210ENST00000472880 SULT1A2P50226 295 aa13.08□□□□□ -0.32
COL9A3-210ENST00000472880 COX8CQ7Z4L0 72 aa13.08□□□□□ -0.32
COL9A3-210ENST00000472880 RMI2Q96E14 147 aa13.08□□□□□ -0.32
COL9A3-210ENST00000472880 IGLV2-33A0A075B6J2 118 aaPredicted RBP13.07□□□□□ -0.32
COL9A3-210ENST00000472880 TMSB15BA0A087X1C1 80 aa13.07□□□□□ -0.32
COL9A3-210ENST00000472880 M0R381 172 aa13.07□□□□□ -0.32
COL9A3-210ENST00000472880 C9orf62Q8N4C0 152 aa13.07□□□□□ -0.32
COL9A3-210ENST00000472880 SFRP2Q96HF1 295 aa13.07□□□□□ -0.32
COL9A3-210ENST00000472880 TRAV1-1A0A0B4J248 108 aa13.06□□□□□ -0.32
COL9A3-210ENST00000472880 SCO2A0A1W2PP80 73 aa13.06□□□□□ -0.32
COL9A3-210ENST00000472880 LTAP01374 205 aa13.06□□□□□ -0.32
COL9A3-210ENST00000472880 CCL20P78556 96 aa13.06□□□□□ -0.32
COL9A3-210ENST00000472880 LINC01559Q495D7 138 aa13.06□□□□□ -0.32
COL9A3-210ENST00000472880 ZFP82Q8N141 532 aa13.06□□□□□ -0.32
COL9A3-210ENST00000472880 ZNF674Q2M3X9 581 aa13.05□□□□□ -0.32
COL9A3-210ENST00000472880 NIT1Q86X76 327 aa13.05□□□□□ -0.32
COL9A3-210ENST00000472880 BAALCQ8WXS3 180 aa13.05□□□□□ -0.32
COL9A3-210ENST00000472880 MANBALQ9NQG1 85 aa13.05□□□□□ -0.32
COL9A3-210ENST00000472880 SRRM2Q9UQ35 2752 aaKnown RBP13.04□□□□□ -0.32
COL9A3-210ENST00000472880 IGKV2D-24A0A075B6R9 120 aa13.04□□□□□ -0.32
COL9A3-210ENST00000472880 A0A087WX48 190 aa13.04□□□□□ -0.32
COL9A3-210ENST00000472880 RPL36AP83881 106 aaKnown RBP13.04□□□□□ -0.32
COL9A3-210ENST00000472880 KCNIP4Q6PIL6 250 aa13.04□□□□□ -0.32
COL9A3-210ENST00000472880 Q6ZSA8 131 aa13.04□□□□□ -0.32
COL9A3-210ENST00000472880 RPL36ALQ969Q0 106 aaKnown RBP13.04□□□□□ -0.32
COL9A3-210ENST00000472880 GNG13Q9P2W3 67 aa13.04□□□□□ -0.32
COL9A3-210ENST00000472880 MYCBP2O75592 4640 aa13.03□□□□□ -0.32
COL9A3-210ENST00000472880 TRBV10-1A0A0K0K1A3 114 aa13.03□□□□□ -0.32
COL9A3-210ENST00000472880 A0A1B0GVG6 124 aa13.03□□□□□ -0.32
COL9A3-210ENST00000472880 TEX46H3BTG2 121 aa13.03□□□□□ -0.32
COL9A3-210ENST00000472880 S100A9P06702 114 aaKnown RBP13.03□□□□□ -0.32
COL9A3-210ENST00000472880 CHCHD7Q9BUK0 85 aa13.03□□□□□ -0.32
COL9A3-210ENST00000472880 KLK12Q9UKR0 248 aa13.03□□□□□ -0.32
COL9A3-210ENST00000472880 FLG2Q5D862 2391 aaPredicted RBP13.02□□□□□ -0.32
COL9A3-210ENST00000472880 PLA2G1BP04054 148 aaKnown RBP13.02□□□□□ -0.33
COL9A3-210ENST00000472880 ELOBQ15370 118 aa13.02□□□□□ -0.33
COL9A3-210ENST00000472880 LINC00528Q8N1L1 170 aa13.01□□□□□ -0.33
COL9A3-210ENST00000472880 Q8N976 141 aa13.01□□□□□ -0.33
COL9A3-210ENST00000472880 UBE2WQ96B02 151 aa13.01□□□□□ -0.33
COL9A3-210ENST00000472880 DNAH8Q96JB1 4490 aa13.01□□□□□ -0.33
COL9A3-210ENST00000472880 TRBV7-3A0A075B6L6 115 aa13□□□□□ -0.33
COL9A3-210ENST00000472880 RBFOX3A6NFN3 312 aa13□□□□□ -0.33
COL9A3-210ENST00000472880 UBE2D3P61077 147 aa13□□□□□ -0.33
COL9A3-210ENST00000472880 UBE2D2P62837 147 aa13□□□□□ -0.33
COL9A3-210ENST00000472880 DNAJC30Q96LL9 226 aa13□□□□□ -0.33
COL9A3-210ENST00000472880 J3QL48 77 aa12.99□□□□□ -0.33
COL9A3-210ENST00000472880 LINC01620Q4KN68 170 aa12.99□□□□□ -0.33
COL9A3-210ENST00000472880 BAGE2Q86Y30 109 aa12.99□□□□□ -0.33
COL9A3-210ENST00000472880 C11orf52Q96A22 123 aa12.99□□□□□ -0.33
COL9A3-210ENST00000472880 MLST8Q9BVC4 326 aa12.99□□□□□ -0.33
COL9A3-210ENST00000472880 ZNF56Q15929 161 aa12.98□□□□□ -0.33
COL9A3-210ENST00000472880 IFNA1P01562 189 aa12.97□□□□□ -0.33
COL9A3-210ENST00000472880 RPL35P42766 123 aaKnown RBP12.97□□□□□ -0.33
COL9A3-210ENST00000472880 RAB4BP61018 213 aa12.97□□□□□ -0.33
COL9A3-210ENST00000472880 Q0VG73 95 aa12.97□□□□□ -0.33
COL9A3-210ENST00000472880 OR10G8Q8NGN5 311 aa12.97□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 81.3 ms