RNA–Protein interactions for RNA: ENST00000471342.1

SF3A1-207, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 459 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-207ENST00000471342 Q6ZTC4 211 aa6.93□□□□□ -1.3
SF3A1-207ENST00000471342 NDUFAF3Q9BU61 184 aa6.93□□□□□ -1.3
SF3A1-207ENST00000471342 DNAH6Q9C0G6 4158 aa6.92□□□□□ -1.3
SF3A1-207ENST00000471342 TRGV1A0A0A0MS02 117 aa6.92□□□□□ -1.3
SF3A1-207ENST00000471342 A0A1B0GUT8 65 aa6.92□□□□□ -1.3
SF3A1-207ENST00000471342 RAB4AP20338 218 aa6.92□□□□□ -1.3
SF3A1-207ENST00000471342 URGCP-MRPS24S4R325 110 aa6.92□□□□□ -1.3
SF3A1-207ENST00000471342 U3KQK5 164 aa6.92□□□□□ -1.3
SF3A1-207ENST00000471342 KMT2CQ8NEZ4 4911 aaKnown RBP6.91□□□□□ -1.3
SF3A1-207ENST00000471342 TRAV9-1A0A075B6T8 112 aa6.91□□□□□ -1.3
SF3A1-207ENST00000471342 A0A087WWL8 130 aa6.91□□□□□ -1.3
SF3A1-207ENST00000471342 TRAV4A0A0B4J268 109 aa6.91□□□□□ -1.3
SF3A1-207ENST00000471342 M0R381 172 aa6.91□□□□□ -1.3
SF3A1-207ENST00000471342 SPART-AS1P0CW21 52 aa6.91□□□□□ -1.3
SF3A1-207ENST00000471342 GATA1P15976 413 aaPredicted RBP6.91□□□□□ -1.3
SF3A1-207ENST00000471342 S100A4P26447 101 aaKnown RBP6.91□□□□□ -1.3
SF3A1-207ENST00000471342 SSTP61278 116 aa6.91□□□□□ -1.3
SF3A1-207ENST00000471342 CACNG7P62955 275 aa6.91□□□□□ -1.3
SF3A1-207ENST00000471342 MRPL54Q6P161 138 aaKnown RBP6.91□□□□□ -1.3
SF3A1-207ENST00000471342 ZFP82Q8N141 532 aa6.91□□□□□ -1.3
SF3A1-207ENST00000471342 C14orf178Q8N769 122 aaPredicted RBP6.91□□□□□ -1.3
SF3A1-207ENST00000471342 TMEM191AQ9H0A3 160 aa6.91□□□□□ -1.3
SF3A1-207ENST00000471342 ZMAT4Q9H898 229 aa6.91□□□□□ -1.3
SF3A1-207ENST00000471342 XKRY2A2RUG3 117 aa6.9□□□□□ -1.3
SF3A1-207ENST00000471342 SNURFLB1AK76 121 aa6.9□□□□□ -1.3
SF3A1-207ENST00000471342 M0QY20 66 aa6.9□□□□□ -1.3
SF3A1-207ENST00000471342 P0DMU3 169 aa6.9□□□□□ -1.3
SF3A1-207ENST00000471342 FAM231AP0DMU4 169 aa6.9□□□□□ -1.3
SF3A1-207ENST00000471342 FAM231CP0DMU5 169 aa6.9□□□□□ -1.3
SF3A1-207ENST00000471342 DEFB130BP0DP73 79 aa6.9□□□□□ -1.3
SF3A1-207ENST00000471342 DEFB130AP0DP74 79 aa6.9□□□□□ -1.3
SF3A1-207ENST00000471342 RPS10P46783 165 aaKnown RBP6.9□□□□□ -1.3
SF3A1-207ENST00000471342 SLAQ13239 276 aa6.9□□□□□ -1.3
SF3A1-207ENST00000471342 FAM104BQ5XKR9 115 aa6.9□□□□□ -1.3
SF3A1-207ENST00000471342 ZFP2Q6ZN57 461 aa6.9□□□□□ -1.3
SF3A1-207ENST00000471342 ATP5L2Q7Z4Y8 100 aa6.9□□□□□ -1.3
SF3A1-207ENST00000471342 AMN1Q8IY45 258 aa6.9□□□□□ -1.3
SF3A1-207ENST00000471342 NRACQ8N912 160 aa6.9□□□□□ -1.3
SF3A1-207ENST00000471342 BTF3L4Q96K17 158 aa6.9□□□□□ -1.3
SF3A1-207ENST00000471342 TPPP3Q9BW30 176 aa6.9□□□□□ -1.3
SF3A1-207ENST00000471342 SMCO4Q9NRQ5 59 aa6.9□□□□□ -1.3
SF3A1-207ENST00000471342 PHLDA3Q9Y5J5 127 aa6.9□□□□□ -1.3
SF3A1-207ENST00000471342 IGHV3-73A0A0B4J1V6 119 aa6.89□□□□□ -1.31
SF3A1-207ENST00000471342 LOC100131303A0A0U1RQF7 123 aa6.89□□□□□ -1.31
SF3A1-207ENST00000471342 IGHV3-53P01767 116 aa6.89□□□□□ -1.31
SF3A1-207ENST00000471342 MRPL51Q4U2R6 128 aaKnown RBP6.89□□□□□ -1.31
SF3A1-207ENST00000471342 KMT2AQ03164 3969 aa6.89□□□□□ -1.31
SF3A1-207ENST00000471342 ALMS1Q8TCU4 4167 aa6.89□□□□□ -1.31
SF3A1-207ENST00000471342 TRAV26-2A0A0B4J265 109 aa6.88□□□□□ -1.31
SF3A1-207ENST00000471342 A8MWV9 139 aa6.88□□□□□ -1.31
SF3A1-207ENST00000471342 CAMPP49913 170 aa6.88□□□□□ -1.31
SF3A1-207ENST00000471342 CRYBA4P53673 196 aa6.88□□□□□ -1.31
SF3A1-207ENST00000471342 HBBP68871 147 aa6.88□□□□□ -1.31
SF3A1-207ENST00000471342 TWIST1Q15672 202 aa6.88□□□□□ -1.31
SF3A1-207ENST00000471342 SPANXN1Q5VSR9 72 aa6.88□□□□□ -1.31
SF3A1-207ENST00000471342 SUMO4Q6EEV6 95 aa6.88□□□□□ -1.31
SF3A1-207ENST00000471342 RASL11AQ6T310 242 aa6.88□□□□□ -1.31
SF3A1-207ENST00000471342 SLC25A29Q8N8R3 303 aa6.88□□□□□ -1.31
SF3A1-207ENST00000471342 C11orf45Q8TAV5 145 aa6.88□□□□□ -1.31
SF3A1-207ENST00000471342 IGLV2-18A0A075B6J9 118 aa6.87□□□□□ -1.31
SF3A1-207ENST00000471342 SMKR1H3BMG3 65 aa6.87□□□□□ -1.31
SF3A1-207ENST00000471342 RIGQ13278 110 aa6.87□□□□□ -1.31
SF3A1-207ENST00000471342 FAM210BQ96KR6 192 aa6.87□□□□□ -1.31
SF3A1-207ENST00000471342 GNB1LQ9BYB4 327 aa6.87□□□□□ -1.31
SF3A1-207ENST00000471342 DPH3P1Q9H4G8 78 aa6.87□□□□□ -1.31
SF3A1-207ENST00000471342 DAD1P61803 113 aa6.86□□□□□ -1.31
SF3A1-207ENST00000471342 NEXN-AS1Q8NBZ9 246 aa6.86□□□□□ -1.31
SF3A1-207ENST00000471342 OR4C5Q8NGB2 326 aa6.86□□□□□ -1.31
SF3A1-207ENST00000471342 URB1-AS1Q96HZ7 61 aa6.86□□□□□ -1.31
SF3A1-207ENST00000471342 RYR3Q15413 4870 aa6.86□□□□□ -1.31
SF3A1-207ENST00000471342 TRBV6-5A0A0K0K1A5 114 aa6.85□□□□□ -1.31
SF3A1-207ENST00000471342 TEX48A0A1B0GUV7 120 aa6.85□□□□□ -1.31
SF3A1-207ENST00000471342 A0A1B0GW15 77 aa6.85□□□□□ -1.31
SF3A1-207ENST00000471342 TRBV6-4A0A1B0GX49 114 aa6.85□□□□□ -1.31
SF3A1-207ENST00000471342 PRSS47A8MTI9 375 aa6.85□□□□□ -1.31
SF3A1-207ENST00000471342 POLR2KP53803 58 aaKnown RBP6.85□□□□□ -1.31
SF3A1-207ENST00000471342 LINC00310P59036 64 aa6.85□□□□□ -1.31
SF3A1-207ENST00000471342 RAB4BP61018 213 aa6.85□□□□□ -1.31
SF3A1-207ENST00000471342 KIAA1644Q3SXP7 199 aa6.85□□□□□ -1.31
SF3A1-207ENST00000471342 SYT8Q8NBV8 401 aa6.85□□□□□ -1.31
SF3A1-207ENST00000471342 RPL39LQ96EH5 51 aaKnown RBP6.85□□□□□ -1.31
SF3A1-207ENST00000471342 AP1S3Q96PC3 154 aa6.85□□□□□ -1.31
SF3A1-207ENST00000471342 DNAH2Q9P225 4427 aa6.85□□□□□ -1.31
SF3A1-207ENST00000471342 TRGV2A0A075B6R0 118 aa6.84□□□□□ -1.31
SF3A1-207ENST00000471342 A0A096LPF7 62 aa6.84□□□□□ -1.31
SF3A1-207ENST00000471342 CIDEAO60543 219 aa6.84□□□□□ -1.31
SF3A1-207ENST00000471342 ATP5G1P05496 136 aa6.84□□□□□ -1.31
SF3A1-207ENST00000471342 TRGC1P0CF51 173 aa6.84□□□□□ -1.31
SF3A1-207ENST00000471342 RAB5AP20339 215 aa6.84□□□□□ -1.31
SF3A1-207ENST00000471342 KCNIP4Q6PIL6 250 aa6.84□□□□□ -1.31
SF3A1-207ENST00000471342 NTM-AS1Q6ZSK4 140 aa6.84□□□□□ -1.31
SF3A1-207ENST00000471342 PHLDA1Q8WV24 401 aaPredicted RBP6.84□□□□□ -1.31
SF3A1-207ENST00000471342 ALKBH7Q9BT30 221 aaPredicted RBP6.84□□□□□ -1.31
SF3A1-207ENST00000471342 APLNQ9ULZ1 77 aa6.84□□□□□ -1.31
SF3A1-207ENST00000471342 HHLA3Q9XRX5 114 aa6.84□□□□□ -1.31
SF3A1-207ENST00000471342 DEFB131BA0A096LNP1 70 aa6.83□□□□□ -1.32
SF3A1-207ENST00000471342 H3BNG1 76 aa6.83□□□□□ -1.32
SF3A1-207ENST00000471342 NCR2O95944 276 aa6.83□□□□□ -1.32
SF3A1-207ENST00000471342 NPYP01303 97 aa6.83□□□□□ -1.32
SF3A1-207ENST00000471342 FAM74A4Q5TZK3 123 aa6.83□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms