RNA–Protein interactions for RNA: ENST00000470268.1

SF3B1-208, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2

Gene SF3B1, Length 2,003 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-208ENST00000470268 F2Z2F3 143 aa3.43□□□□□ -1.86
SF3B1-208ENST00000470268 K7EQM0 130 aa3.43□□□□□ -1.86
SF3B1-208ENST00000470268 M0R143 59 aa3.43□□□□□ -1.86
SF3B1-208ENST00000470268 DUSP14O95147 198 aaKnown RBP3.43□□□□□ -1.86
SF3B1-208ENST00000470268 LINC00614P0C842 121 aa3.43□□□□□ -1.86
SF3B1-208ENST00000470268 CRISP2P16562 243 aa3.43□□□□□ -1.86
SF3B1-208ENST00000470268 GAGE1Q13065 139 aa3.43□□□□□ -1.86
SF3B1-208ENST00000470268 IBA57Q5T440 356 aaKnown RBP3.43□□□□□ -1.86
SF3B1-208ENST00000470268 SMIM15Q7Z3B0 74 aa3.43□□□□□ -1.86
SF3B1-208ENST00000470268 TMEM183AQ8IXX5 376 aa3.43□□□□□ -1.86
SF3B1-208ENST00000470268 ZC2HC1AQ96GY0 325 aa3.43□□□□□ -1.86
SF3B1-208ENST00000470268 HIST1H2BLQ99880 126 aa3.43□□□□□ -1.86
SF3B1-208ENST00000470268 IL36BQ9NZH7 164 aa3.43□□□□□ -1.86
SF3B1-208ENST00000470268 XCL2Q9UBD3 114 aa3.43□□□□□ -1.86
SF3B1-208ENST00000470268 NBEAL1Q6ZS30 2694 aa3.43□□□□□ -1.86
SF3B1-208ENST00000470268 NOTCH1P46531 2555 aa3.43□□□□□ -1.86
SF3B1-208ENST00000470268 A8MZ25 164 aa3.43□□□□□ -1.86
SF3B1-208ENST00000470268 NUPR1O60356 82 aa3.43□□□□□ -1.86
SF3B1-208ENST00000470268 ZNF324O75467 553 aaPredicted RBP3.43□□□□□ -1.86
SF3B1-208ENST00000470268 PRM2P04554 102 aa3.43□□□□□ -1.86
SF3B1-208ENST00000470268 KIAA1644Q3SXP7 199 aa3.43□□□□□ -1.86
SF3B1-208ENST00000470268 COX8CQ7Z4L0 72 aa3.43□□□□□ -1.86
SF3B1-208ENST00000470268 CSNK1G2-AS1Q8NCQ2 148 aa3.43□□□□□ -1.86
SF3B1-208ENST00000470268 GTSF1Q8WW33 167 aa3.43□□□□□ -1.86
SF3B1-208ENST00000470268 TMEM18Q96B42 140 aa3.43□□□□□ -1.86
SF3B1-208ENST00000470268 ODF3Q96PU9 254 aa3.43□□□□□ -1.86
SF3B1-208ENST00000470268 ZFP30Q9Y2G7 519 aa3.43□□□□□ -1.86
SF3B1-208ENST00000470268 LENEPQ9Y5L5 61 aa3.43□□□□□ -1.86
SF3B1-208ENST00000470268 LOC102724200A0A096LPH7 203 aaPredicted RBP3.42□□□□□ -1.86
SF3B1-208ENST00000470268 TRAV12-3A0A0B4J271 114 aa3.42□□□□□ -1.86
SF3B1-208ENST00000470268 MUC21A0A0G2JKD1 596 aa3.42□□□□□ -1.86
SF3B1-208ENST00000470268 TRBV7-9A0A0J9YWB2 115 aa3.42□□□□□ -1.86
SF3B1-208ENST00000470268 MUC21A0A140T8X8 626 aa3.42□□□□□ -1.86
SF3B1-208ENST00000470268 FBLL1A6NHQ2 334 aaKnown RBP3.42□□□□□ -1.86
SF3B1-208ENST00000470268 KRTAP29-1A8MX34 341 aaPredicted RBP3.42□□□□□ -1.86
SF3B1-208ENST00000470268 GPX1P07203 203 aa3.42□□□□□ -1.86
SF3B1-208ENST00000470268 RNASE4P34096 147 aaKnown RBP3.42□□□□□ -1.86
SF3B1-208ENST00000470268 MUC21Q5SSG8 566 aa3.42□□□□□ -1.86
SF3B1-208ENST00000470268 KCNIP4Q6PIL6 250 aa3.42□□□□□ -1.86
SF3B1-208ENST00000470268 C1orf158Q8N1D5 194 aa3.42□□□□□ -1.86
SF3B1-208ENST00000470268 CSTL1Q9H114 145 aa3.42□□□□□ -1.86
SF3B1-208ENST00000470268 TRAPPC1Q9Y5R8 145 aa3.42□□□□□ -1.86
SF3B1-208ENST00000470268 LY96Q9Y6Y9 160 aa3.42□□□□□ -1.86
SF3B1-208ENST00000470268 TMSB15BA0A087X1C1 80 aa3.41□□□□□ -1.86
SF3B1-208ENST00000470268 IGKV3D-20A0A0C4DH25 116 aa3.41□□□□□ -1.86
SF3B1-208ENST00000470268 SMIM27A0A1W2PRY6 76 aa3.41□□□□□ -1.86
SF3B1-208ENST00000470268 C19orf71A6NCJ1 209 aa3.41□□□□□ -1.86
SF3B1-208ENST00000470268 SH2D1AO60880 128 aa3.41□□□□□ -1.86
SF3B1-208ENST00000470268 TYMSP04818 313 aa3.41□□□□□ -1.86
SF3B1-208ENST00000470268 Q6AWC8 147 aa3.41□□□□□ -1.86
SF3B1-208ENST00000470268 TMEM256Q8N2U0 113 aa3.41□□□□□ -1.86
SF3B1-208ENST00000470268 NUP35Q8NFH5 326 aa3.41□□□□□ -1.86
SF3B1-208ENST00000470268 NDFIP1Q9BT67 221 aa3.41□□□□□ -1.86
SF3B1-208ENST00000470268 OSTCQ9NRP0 149 aa3.41□□□□□ -1.86
SF3B1-208ENST00000470268 TP53TG3Q9ULZ0 132 aa3.41□□□□□ -1.86
SF3B1-208ENST00000470268 KIR2DL5BA0A0G2JN68 375 aa3.41□□□□□ -1.86
SF3B1-208ENST00000470268 KIR2DL5BA0A0G2JPC4 375 aa3.41□□□□□ -1.86
SF3B1-208ENST00000470268 C7orf71A4D174 169 aa3.41□□□□□ -1.86
SF3B1-208ENST00000470268 HIGD1CA8MV81 97 aa3.41□□□□□ -1.86
SF3B1-208ENST00000470268 SNURFLB1AK76 121 aa3.41□□□□□ -1.86
SF3B1-208ENST00000470268 AMBPP02760 352 aa3.41□□□□□ -1.86
SF3B1-208ENST00000470268 LEPP41159 167 aa3.41□□□□□ -1.86
SF3B1-208ENST00000470268 CAMPP49913 170 aa3.41□□□□□ -1.86
SF3B1-208ENST00000470268 DEFB135Q30KP9 77 aa3.41□□□□□ -1.86
SF3B1-208ENST00000470268 DEFB121Q5J5C9 76 aa3.41□□□□□ -1.86
SF3B1-208ENST00000470268 MORN3Q6PF18 240 aaPredicted RBP3.41□□□□□ -1.86
SF3B1-208ENST00000470268 TMEM136Q6ZRR5 245 aa3.41□□□□□ -1.86
SF3B1-208ENST00000470268 SBSPONQ8IVN8 264 aa3.41□□□□□ -1.86
SF3B1-208ENST00000470268 KIR2DL5AQ8N109 375 aa3.41□□□□□ -1.86
SF3B1-208ENST00000470268 KIR2DL5BQ8NHK3 375 aa3.41□□□□□ -1.86
SF3B1-208ENST00000470268 RNASE8Q8TDE3 154 aaKnown RBP3.41□□□□□ -1.86
SF3B1-208ENST00000470268 SMIM12Q96EX1 92 aa3.41□□□□□ -1.86
SF3B1-208ENST00000470268 PGLYRP4Q96LB8 373 aa3.41□□□□□ -1.86
SF3B1-208ENST00000470268 MEGF8Q7Z7M0 2845 aa3.4□□□□□ -1.86
SF3B1-208ENST00000470268 IGHV3OR16-12A0A075B7B8 117 aa3.4□□□□□ -1.87
SF3B1-208ENST00000470268 FABP5P3A8MUU1 101 aa3.4□□□□□ -1.87
SF3B1-208ENST00000470268 AZU1P20160 251 aa3.4□□□□□ -1.87
SF3B1-208ENST00000470268 TSPOP30536 169 aa3.4□□□□□ -1.87
SF3B1-208ENST00000470268 FOXA3P55318 350 aaPredicted RBP3.4□□□□□ -1.87
SF3B1-208ENST00000470268 FAM162BQ5T6X4 162 aa3.4□□□□□ -1.87
SF3B1-208ENST00000470268 ZNF705AQ6ZN79 300 aaPredicted RBP3.4□□□□□ -1.87
SF3B1-208ENST00000470268 MRAPQ8TCY5 172 aa3.4□□□□□ -1.87
SF3B1-208ENST00000470268 BTF3L4Q96K17 158 aa3.4□□□□□ -1.87
SF3B1-208ENST00000470268 ALKBH7Q9BT30 221 aaPredicted RBP3.4□□□□□ -1.87
SF3B1-208ENST00000470268 RPP21Q9H633 154 aaKnown RBP3.4□□□□□ -1.87
SF3B1-208ENST00000470268 RETNQ9HD89 108 aa3.4□□□□□ -1.87
SF3B1-208ENST00000470268 TRAV21A0A0B4J279 112 aa3.39□□□□□ -1.87
SF3B1-208ENST00000470268 GNRH2O43555 120 aa3.39□□□□□ -1.87
SF3B1-208ENST00000470268 INSP01308 110 aa3.39□□□□□ -1.87
SF3B1-208ENST00000470268 P01737 135 aa3.39□□□□□ -1.87
SF3B1-208ENST00000470268 HTN1P15515 57 aa3.39□□□□□ -1.87
SF3B1-208ENST00000470268 APOC4P55056 127 aa3.39□□□□□ -1.87
SF3B1-208ENST00000470268 RBX1P62877 108 aa3.39□□□□□ -1.87
SF3B1-208ENST00000470268 TWIST1Q15672 202 aa3.39□□□□□ -1.87
SF3B1-208ENST00000470268 IQCJQ1A5X6 159 aa3.39□□□□□ -1.87
SF3B1-208ENST00000470268 TDRG1Q3Y452 100 aa3.39□□□□□ -1.87
SF3B1-208ENST00000470268 FAM231DQ6ZW35 169 aa3.39□□□□□ -1.87
SF3B1-208ENST00000470268 MRPL52Q86TS9 123 aaKnown RBP3.39□□□□□ -1.87
SF3B1-208ENST00000470268 OR2D3Q8NGH3 330 aa3.39□□□□□ -1.87
SF3B1-208ENST00000470268 TSKUQ8WUA8 353 aa3.39□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 60.1 ms